Wall clock time and date at job start Tue Mar 31 2020 21:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 H 1.08994 * 109.47488 * 304.99578 * 3 2 1 5 5 C 1.53010 * 109.46616 * 184.99962 * 3 2 1 6 6 O 1.42898 * 109.47313 * 65.00032 * 3 2 1 7 7 C 1.42898 * 114.00310 * 209.99899 * 6 3 2 8 8 C 1.50696 * 109.47209 * 180.02562 * 7 6 3 9 9 O 1.21274 * 120.00295 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99803 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00090 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47293 * 180.02562 * 11 10 8 13 13 N 1.31792 * 119.09698 * 90.00387 * 12 11 10 14 14 C 1.32794 * 120.72023 * 180.02562 * 13 12 11 15 15 O 1.35512 * 120.51026 * 179.97438 * 14 13 12 16 16 C 1.39412 * 118.97571 * 359.97438 * 14 13 12 17 17 C 1.38195 * 118.35065 * 0.02562 * 16 14 13 18 18 C 1.50698 * 120.41146 * 180.02562 * 17 16 14 19 19 N 1.46503 * 109.46869 * 95.00132 * 18 17 16 20 20 C 1.36931 * 120.00066 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00342 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00040 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00316 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46892 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47015 * 119.99984 * 24 22 20 27 27 H 1.48500 * 109.46967 * 240.00065 * 24 22 20 28 28 N 1.31757 * 119.09304 * 270.00368 * 12 11 10 29 29 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47392 * 299.99825 * 1 2 3 31 31 H 1.08997 * 109.47094 * 60.00407 * 1 2 3 32 32 H 1.08994 * 109.46869 * 240.00135 * 2 1 3 33 33 H 1.09003 * 109.47084 * 120.00037 * 2 1 3 34 34 H 1.09000 * 109.46595 * 299.99682 * 5 3 2 35 35 H 1.08994 * 109.47103 * 59.99931 * 5 3 2 36 36 H 1.08998 * 109.46443 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47278 * 59.99586 * 7 6 3 38 38 H 1.09004 * 109.46500 * 300.00220 * 7 6 3 39 39 H 0.96998 * 119.99889 * 0.02562 * 10 8 7 40 40 H 1.09006 * 109.46737 * 60.00549 * 11 10 8 41 41 H 1.09002 * 109.47059 * 300.00673 * 11 10 8 42 42 H 0.96702 * 114.00413 * 90.00205 * 15 14 13 43 43 H 1.07995 * 120.82639 * 180.02562 * 16 14 13 44 44 H 1.08990 * 109.47330 * 214.99745 * 18 17 16 45 45 H 1.09003 * 109.47269 * 335.00470 * 18 17 16 46 46 H 0.97001 * 120.00120 * 359.97438 * 19 18 17 47 47 H 0.96994 * 120.00308 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2210 7 6 1.4557 3.4903 1.1003 8 6 1.0637 4.0573 2.4404 9 8 0.9695 3.3268 3.4038 10 7 0.8177 5.3762 2.5681 11 6 0.4360 5.9274 3.8707 12 6 0.2187 7.4131 3.7434 13 7 -0.9833 7.8616 3.4418 14 6 -1.2108 9.1643 3.3211 15 8 -2.4483 9.6207 3.0103 16 6 -0.1568 10.0551 3.5189 17 6 1.0868 9.5410 3.8336 18 6 2.2585 10.4617 4.0578 19 7 2.3986 10.7337 5.4905 20 6 3.4022 11.5511 5.9373 21 1 4.0903 11.9956 5.2335 22 6 3.5346 11.8092 7.2948 23 7 2.6952 11.2688 8.1524 24 14 4.9034 12.9249 7.9042 25 1 5.7045 13.4020 6.7485 26 1 4.3144 14.0891 8.6133 27 1 5.7798 12.1698 8.8353 28 7 1.2358 8.2282 3.9366 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9993 0.9053 0.7162 35 1 3.8532 0.9570 -1.0570 36 1 3.9281 2.4720 -0.1253 37 1 0.6617 3.6808 0.3783 38 1 2.3767 3.9644 0.7609 39 1 0.8926 5.9604 1.7974 40 1 1.2300 5.7365 4.5927 41 1 -0.4852 5.4535 4.2099 42 1 -3.0068 9.7981 3.7795 43 1 -0.3084 11.1206 3.4286 44 1 3.1680 9.9892 3.6871 45 1 2.0921 11.3979 3.5248 46 1 1.7803 10.3348 6.1226 47 1 2.7879 11.4489 9.1010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707181158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:42 Heat of formation + Delta-G solvation = -64.632124 kcal Electronic energy + Delta-G solvation = -28167.260054 eV Core-core repulsion = 23965.266271 eV Total energy + Delta-G solvation = -4201.993783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29377 -39.94372 -38.47937 -37.79461 -35.70954 -34.68009 -34.10654 -33.16180 -31.90935 -30.72971 -30.26774 -29.00990 -26.64518 -26.58030 -23.98827 -23.53038 -22.87423 -21.57068 -21.39764 -20.85970 -18.90884 -17.93761 -17.51242 -17.43404 -17.27973 -16.39154 -16.18448 -15.67661 -15.34686 -14.96916 -14.91353 -14.75908 -14.26690 -14.13964 -13.89264 -13.73243 -13.67012 -13.36116 -13.10209 -13.01360 -12.77352 -12.68916 -12.36487 -12.14729 -11.98204 -11.93375 -11.69167 -11.35232 -11.08719 -10.92137 -10.90178 -10.68607 -10.42822 -10.14433 -10.07019 -9.96045 -9.84651 -9.44882 -9.29911 -9.23745 -9.02213 -7.09214 -5.86809 -3.18528 0.71237 0.95893 2.44239 2.54040 3.14836 3.38441 3.43752 3.46462 3.53863 3.77908 3.87978 4.29642 4.35804 4.53921 4.54728 4.60767 4.73069 4.78275 4.86151 4.88428 4.97682 5.07561 5.19296 5.26152 5.27758 5.31335 5.33057 5.45402 5.56823 5.58792 5.64556 5.71121 5.78302 5.82862 5.92543 6.01421 6.08814 6.16093 6.31345 6.41837 6.76928 6.97675 7.23513 7.25403 7.59744 8.01249 8.05858 8.28697 9.41155 9.91575 10.26978 11.35519 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.002063 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.508598 B =13568.718678 C =15064.328109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.178 4.178 6 O -0.353 6.353 7 C 0.046 3.954 8 C 0.518 3.482 9 O -0.515 6.515 10 N -0.720 5.720 11 C 0.198 3.802 12 C 0.316 3.684 13 N -0.533 5.533 14 C 0.354 3.646 15 O -0.478 6.478 16 C -0.217 4.217 17 C 0.200 3.800 18 C 0.196 3.804 19 N -0.722 5.722 20 C -0.245 4.245 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 N -0.491 5.491 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.401 0.599 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.408 0.592 43 H 0.156 0.844 44 H 0.048 0.952 45 H 0.045 0.955 46 H 0.385 0.615 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -15.203 -19.616 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.034 4.034 8 C 0.303 3.697 9 O -0.389 6.389 10 N -0.375 5.375 11 C 0.073 3.927 12 C 0.047 3.953 13 N -0.259 5.259 14 C 0.167 3.833 15 O -0.285 6.285 16 C -0.241 4.241 17 C 0.055 3.945 18 C 0.069 3.931 19 N -0.367 5.367 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 N -0.207 5.207 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.235 0.765 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.267 0.733 43 H 0.174 0.826 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.571 -16.691 -19.212 26.284 hybrid contribution 0.097 2.060 0.371 2.096 sum -6.474 -14.630 -18.841 24.718 Atomic orbital electron populations 1.21748 0.95282 1.01742 1.02276 1.21626 0.96736 0.94583 1.02822 1.22248 0.94419 0.94217 0.86612 0.92035 1.22320 0.95944 1.02611 1.02638 1.88060 1.89396 1.17674 1.32049 1.22183 1.01638 0.84398 0.95188 1.20170 0.77429 0.81648 0.90460 1.90757 1.49838 1.58328 1.39946 1.45671 1.71469 1.08315 1.12020 1.19871 1.02973 0.83892 0.85954 1.22692 0.83353 0.96746 0.92554 1.67676 1.25487 1.16785 1.15909 1.19367 0.86521 0.87178 0.90269 1.84687 1.22900 1.84681 1.36251 1.22977 0.94170 1.03123 1.03806 1.22206 0.94862 0.90253 0.87187 1.19718 0.91144 0.92843 0.89435 1.42178 1.37024 1.58132 0.99407 1.19241 1.06305 1.20697 0.91334 0.90670 1.24793 0.99247 1.00748 0.95852 1.69677 1.38446 1.47776 1.01840 0.86052 0.81215 0.79869 0.78608 1.20393 1.21765 1.21703 1.68192 1.33607 1.04545 1.14387 0.92685 0.91688 0.93123 0.90690 0.90819 0.91459 0.91524 0.92343 0.90238 0.90174 0.76480 0.88029 0.88581 0.73257 0.82583 0.93430 0.93792 0.78086 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.81 37.16 0.36 -0.73 16 2 C -0.12 -0.84 5.64 -26.73 -0.15 -0.99 16 3 C 0.08 0.62 2.72 -26.73 -0.07 0.55 16 4 H 0.06 0.37 7.79 -51.93 -0.40 -0.04 16 5 C -0.18 -1.19 9.53 37.16 0.35 -0.84 16 6 O -0.35 -3.83 9.06 -55.14 -0.50 -4.33 16 7 C 0.05 0.41 6.23 36.00 0.22 0.63 16 8 C 0.52 6.37 7.91 -10.99 -0.09 6.28 16 9 O -0.51 -8.61 16.50 -14.35 -0.24 -8.85 16 10 N -0.72 -8.04 5.55 -61.48 -0.34 -8.38 16 11 C 0.20 2.62 6.10 -5.20 -0.03 2.59 16 12 C 0.32 4.69 7.01 -157.23 -1.10 3.59 16 13 N -0.53 -7.77 10.36 -10.78 -0.11 -7.88 16 14 C 0.35 4.86 7.83 -16.70 -0.13 4.73 16 15 O -0.48 -5.30 13.58 -18.23 -0.25 -5.55 16 16 C -0.22 -3.12 9.79 -39.16 -0.38 -3.51 16 17 C 0.20 3.38 6.18 -82.31 -0.51 2.87 16 18 C 0.20 3.76 6.61 -5.19 -0.03 3.72 16 19 N -0.72 -17.74 5.59 -61.09 -0.34 -18.08 16 20 C -0.25 -6.63 9.99 -15.06 -0.15 -6.78 16 21 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 N -0.49 -8.31 10.27 -7.06 -0.07 -8.38 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 37 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 39 H 0.40 3.65 8.46 -40.82 -0.35 3.31 16 40 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.41 2.58 9.06 45.56 0.41 3.00 16 43 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 46 H 0.39 10.22 7.66 -40.82 -0.31 9.91 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -35.28 405.84 -8.32 -43.60 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.49 Total: 10.07 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -1.81 Total: 11.76 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -0.14 Total: -69.67 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.98 Total: -18.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.28 -8.32 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707181158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.029 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds