Wall clock time and date at job start Tue Mar 31 2020 21:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 H 1.08994 * 109.47488 * 304.99578 * 3 2 1 5 5 C 1.53010 * 109.46616 * 184.99962 * 3 2 1 6 6 O 1.42898 * 109.47313 * 65.00032 * 3 2 1 7 7 C 1.42898 * 114.00310 * 209.99899 * 6 3 2 8 8 C 1.50696 * 109.47209 * 180.02562 * 7 6 3 9 9 O 1.21274 * 120.00295 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99803 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00090 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47293 * 180.02562 * 11 10 8 13 13 N 1.31792 * 119.09698 * 90.00387 * 12 11 10 14 14 C 1.32794 * 120.72023 * 180.02562 * 13 12 11 15 15 O 1.35512 * 120.51026 * 179.97438 * 14 13 12 16 16 C 1.39412 * 118.97571 * 359.97438 * 14 13 12 17 17 C 1.38195 * 118.35065 * 0.02562 * 16 14 13 18 18 C 1.50698 * 120.41146 * 180.02562 * 17 16 14 19 19 N 1.46503 * 109.46869 * 95.00132 * 18 17 16 20 20 C 1.36931 * 120.00066 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00342 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00040 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00316 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00000 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46892 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47015 * 119.99984 * 24 22 20 27 27 H 1.48500 * 109.46967 * 240.00065 * 24 22 20 28 28 N 1.31757 * 119.09304 * 270.00368 * 12 11 10 29 29 H 1.09003 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47392 * 299.99825 * 1 2 3 31 31 H 1.08997 * 109.47094 * 60.00407 * 1 2 3 32 32 H 1.08994 * 109.46869 * 240.00135 * 2 1 3 33 33 H 1.09003 * 109.47084 * 120.00037 * 2 1 3 34 34 H 1.09000 * 109.46595 * 299.99682 * 5 3 2 35 35 H 1.08994 * 109.47103 * 59.99931 * 5 3 2 36 36 H 1.08998 * 109.46443 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47278 * 59.99586 * 7 6 3 38 38 H 1.09004 * 109.46500 * 300.00220 * 7 6 3 39 39 H 0.96998 * 119.99889 * 0.02562 * 10 8 7 40 40 H 1.09006 * 109.46737 * 60.00549 * 11 10 8 41 41 H 1.09002 * 109.47059 * 300.00673 * 11 10 8 42 42 H 0.96702 * 114.00413 * 90.00205 * 15 14 13 43 43 H 1.07995 * 120.82639 * 180.02562 * 16 14 13 44 44 H 1.08990 * 109.47330 * 214.99745 * 18 17 16 45 45 H 1.09003 * 109.47269 * 335.00470 * 18 17 16 46 46 H 0.97001 * 120.00120 * 359.97438 * 19 18 17 47 47 H 0.96994 * 120.00308 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2210 7 6 1.4557 3.4903 1.1003 8 6 1.0637 4.0573 2.4404 9 8 0.9695 3.3268 3.4038 10 7 0.8177 5.3762 2.5681 11 6 0.4360 5.9274 3.8707 12 6 0.2187 7.4131 3.7434 13 7 -0.9833 7.8616 3.4418 14 6 -1.2108 9.1643 3.3211 15 8 -2.4483 9.6207 3.0103 16 6 -0.1568 10.0551 3.5189 17 6 1.0868 9.5410 3.8336 18 6 2.2585 10.4617 4.0578 19 7 2.3986 10.7337 5.4905 20 6 3.4022 11.5511 5.9373 21 1 4.0903 11.9956 5.2335 22 6 3.5346 11.8092 7.2948 23 7 2.6952 11.2688 8.1524 24 14 4.9034 12.9249 7.9042 25 1 5.7045 13.4020 6.7485 26 1 4.3144 14.0891 8.6133 27 1 5.7798 12.1698 8.8353 28 7 1.2358 8.2282 3.9366 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9993 0.9053 0.7162 35 1 3.8532 0.9570 -1.0570 36 1 3.9281 2.4720 -0.1253 37 1 0.6617 3.6808 0.3783 38 1 2.3767 3.9644 0.7609 39 1 0.8926 5.9604 1.7974 40 1 1.2300 5.7365 4.5927 41 1 -0.4852 5.4535 4.2099 42 1 -3.0068 9.7981 3.7795 43 1 -0.3084 11.1206 3.4286 44 1 3.1680 9.9892 3.6871 45 1 2.0921 11.3979 3.5248 46 1 1.7803 10.3348 6.1226 47 1 2.7879 11.4489 9.1010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707181158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:41 Heat of formation + Delta-G solvation = -93.923640 kcal Electronic energy + Delta-G solvation = -28168.530229 eV Core-core repulsion = 23965.266271 eV Total energy + Delta-G solvation = -4203.263958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45905 -40.88454 -39.21321 -38.78960 -37.17264 -35.97323 -34.73374 -34.64612 -33.18128 -32.41702 -30.84124 -29.94505 -28.24966 -27.54444 -25.25279 -24.55906 -24.08064 -22.94543 -21.99880 -21.78677 -19.98022 -19.44658 -18.84614 -18.43527 -18.18886 -17.30335 -17.07072 -16.85702 -16.63950 -16.38967 -15.82316 -15.73494 -15.52910 -15.44154 -14.94605 -14.76296 -14.54560 -14.45984 -14.27718 -14.12839 -13.84949 -13.64711 -13.53747 -13.17455 -12.96588 -12.94744 -12.80654 -12.56023 -12.25201 -12.08102 -11.97459 -11.90533 -11.81258 -11.52853 -11.46532 -11.09443 -11.03377 -10.60807 -10.59046 -10.43378 -10.31246 -9.09068 -7.97800 -5.29125 -0.42669 -0.22711 1.49149 1.49283 1.50559 1.60422 1.66159 2.08554 2.48330 2.60660 2.66207 3.02552 3.11522 3.37670 3.62884 3.78376 3.88166 3.91909 4.06633 4.09128 4.12200 4.17934 4.21183 4.21969 4.30181 4.44123 4.45574 4.56100 4.68599 4.73969 4.79508 4.83112 4.88899 5.06976 5.08995 5.11794 5.12287 5.23230 5.31042 5.45050 5.48887 5.80496 6.13055 6.21206 6.40405 6.45313 6.87665 7.08346 7.28807 7.95940 8.20725 9.25734 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.002063 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.508598 B =13568.718678 C =15064.328109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.084 0.916 5 C -0.176 4.176 6 O -0.387 6.387 7 C 0.049 3.951 8 C 0.516 3.484 9 O -0.567 6.567 10 N -0.708 5.708 11 C 0.202 3.798 12 C 0.319 3.681 13 N -0.536 5.536 14 C 0.365 3.635 15 O -0.474 6.474 16 C -0.210 4.210 17 C 0.183 3.817 18 C 0.198 3.802 19 N -0.736 5.736 20 C -0.243 4.243 21 H 0.087 0.913 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.297 1.297 28 N -0.515 5.515 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.414 0.586 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.430 0.570 43 H 0.175 0.825 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.372 0.628 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 -14.528 -22.322 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.102 0.898 5 C -0.233 4.233 6 O -0.307 6.307 7 C -0.030 4.030 8 C 0.303 3.697 9 O -0.445 6.445 10 N -0.363 5.363 11 C 0.077 3.923 12 C 0.049 3.951 13 N -0.262 5.262 14 C 0.177 3.823 15 O -0.285 6.285 16 C -0.234 4.234 17 C 0.039 3.961 18 C 0.071 3.929 19 N -0.379 5.379 20 C -0.374 4.374 21 H 0.104 0.896 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.220 1.220 27 H -0.225 1.225 28 N -0.232 5.232 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.250 0.750 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.294 0.706 43 H 0.193 0.807 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.203 0.797 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.828 -15.979 -21.993 28.029 hybrid contribution 0.072 1.820 1.102 2.129 sum -6.756 -14.159 -20.891 26.125 Atomic orbital electron populations 1.21724 0.95523 1.01977 1.01626 1.21672 0.96520 0.94573 1.03080 1.22463 0.94969 0.94362 0.86164 0.89824 1.22317 0.95368 1.02711 1.02946 1.88033 1.89801 1.18637 1.34180 1.22291 1.03735 0.83813 0.93163 1.20903 0.76144 0.81333 0.91338 1.90731 1.52266 1.59521 1.41966 1.45564 1.70711 1.08346 1.11652 1.19720 1.02512 0.83299 0.86785 1.22775 0.83160 0.96896 0.92221 1.67759 1.25061 1.17363 1.16018 1.19426 0.87377 0.86731 0.88808 1.84654 1.21930 1.84320 1.37569 1.23080 0.93217 1.04176 1.02902 1.21905 0.95108 0.90106 0.88985 1.19777 0.92225 0.94311 0.86542 1.42342 1.36232 1.57758 1.01562 1.19691 1.06285 1.19834 0.91633 0.89554 1.25632 1.01856 1.02914 0.96320 1.69836 1.40601 1.49930 1.01706 0.85014 0.78456 0.77719 0.78169 1.18482 1.21960 1.22489 1.68113 1.34817 1.04965 1.15336 0.92083 0.94206 0.91778 0.88383 0.92563 0.93133 0.89530 0.92174 0.87127 0.87772 0.75007 0.89584 0.88462 0.70593 0.80717 0.93805 0.91533 0.79686 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.81 71.98 0.71 -1.32 16 2 C -0.12 -1.55 5.64 30.59 0.17 -1.38 16 3 C 0.08 1.04 2.72 30.60 0.08 1.13 16 4 H 0.08 0.74 7.79 -2.39 -0.02 0.73 16 5 C -0.18 -2.09 9.53 71.99 0.69 -1.41 16 6 O -0.39 -8.17 9.06 -129.94 -1.18 -9.34 16 7 C 0.05 0.80 6.23 71.23 0.44 1.24 16 8 C 0.52 12.58 7.91 87.66 0.69 13.28 16 9 O -0.57 -19.66 16.50 16.03 0.26 -19.39 16 10 N -0.71 -15.41 5.55 -466.80 -2.59 -18.00 16 11 C 0.20 5.41 6.10 85.63 0.52 5.94 16 12 C 0.32 9.31 7.01 138.76 0.97 10.29 16 13 N -0.54 -14.84 10.36 -300.71 -3.12 -17.95 16 14 C 0.36 9.21 7.83 84.83 0.66 9.88 16 15 O -0.47 -9.10 13.58 -88.15 -1.20 -10.29 16 16 C -0.21 -5.65 9.79 22.54 0.22 -5.43 16 17 C 0.18 6.03 6.18 42.44 0.26 6.29 16 18 C 0.20 7.41 6.61 85.63 0.57 7.98 16 19 N -0.74 -36.12 5.59 -347.18 -1.94 -38.06 16 20 C -0.24 -13.04 9.99 84.03 0.84 -12.20 16 21 H 0.09 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 24 Si 0.98 45.07 29.55 68.60 2.03 47.09 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 28 N -0.52 -17.32 10.27 -176.24 -1.81 -19.13 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.68 7.87 -2.39 -0.02 0.66 16 37 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 38 H 0.10 1.18 7.87 -2.38 -0.02 1.16 16 39 H 0.41 6.94 8.46 -92.71 -0.78 6.15 16 40 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.43 4.11 9.06 -74.06 -0.67 3.44 16 43 H 0.18 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.21 8.06 -2.39 -0.02 2.20 16 46 H 0.37 20.03 7.66 -92.71 -0.71 19.32 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -77.51 405.84 -3.11 -80.62 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -1.15 Total: 32.49 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: 7.30 Total: 30.53 kcal Atomic # 7 Polarization: -142.53 SS G_CDS: -9.17 Total: -151.71 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -2.11 Total: -39.03 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -77.51 -3.11 -80.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707181158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.304 kcal (2) G-P(sol) polarization free energy of solvation -77.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds