Wall clock time and date at job start Tue Mar 31 2020 20:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34257 * 126.52238 * 60.02690 * 4 2 1 6 6 C 1.34049 * 108.22518 * 180.02562 * 5 4 2 7 7 N 1.29939 * 109.24565 * 359.97438 * 6 5 4 8 8 C 1.36077 * 108.47339 * 359.73874 * 7 6 5 9 9 C 1.47413 * 126.44657 * 180.30089 * 8 7 6 10 10 O 1.21613 * 119.99646 * 180.14337 * 9 8 7 11 11 N 1.34779 * 120.00488 * 0.14149 * 9 8 7 12 12 C 1.46492 * 120.00059 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47107 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.47287 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00217 * 66.04489 * 14 13 12 16 16 C 1.46895 * 110.99743 * 189.99560 * 14 13 12 17 17 C 1.50707 * 109.47114 * 169.99962 * 16 14 13 18 18 O 1.21292 * 119.99645 * 359.97438 * 17 16 14 19 19 N 1.34772 * 119.99964 * 180.02562 * 17 16 14 20 20 C 1.37104 * 119.99590 * 179.97438 * 19 17 16 21 21 H 1.07993 * 119.99912 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99625 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99955 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99663 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47456 * 59.99803 * 24 22 20 26 26 H 1.48497 * 109.46918 * 180.02562 * 24 22 20 27 27 H 1.48510 * 109.46818 * 299.99529 * 24 22 20 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08001 * 125.38296 * 180.02562 * 6 5 4 36 36 H 0.97004 * 119.99669 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.47682 * 299.99812 * 12 11 9 38 38 H 1.09003 * 109.47386 * 60.00437 * 12 11 9 39 39 H 1.09007 * 109.46804 * 299.99676 * 13 12 11 40 40 H 1.09003 * 109.47544 * 59.99447 * 13 12 11 41 41 H 1.08998 * 109.47421 * 59.99226 * 15 14 13 42 42 H 1.08999 * 109.47291 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.46691 * 299.99955 * 15 14 13 44 44 H 1.09002 * 109.47455 * 289.99691 * 16 14 13 45 45 H 1.09005 * 109.47235 * 49.99969 * 16 14 13 46 46 H 0.96999 * 120.00389 * 359.97438 * 19 17 16 47 47 H 0.96996 * 119.99499 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3674 -2.5058 6 6 2.4124 -1.2483 -3.3021 7 7 3.0317 -2.1249 -2.5696 8 6 2.8225 -1.8180 -1.2605 9 6 3.3497 -2.5496 -0.0944 10 8 3.0855 -2.1715 1.0309 11 7 4.1245 -3.6375 -0.2752 12 6 4.6488 -4.3642 0.8837 13 6 5.4913 -5.5482 0.4048 14 7 6.0166 -6.2773 1.5669 15 6 4.9298 -6.9071 2.3286 16 6 7.0166 -7.2718 1.1562 17 6 7.7072 -7.8235 2.3769 18 8 7.3970 -7.4267 3.4804 19 7 8.6700 -8.7569 2.2424 20 6 9.2985 -9.2583 3.3529 21 1 9.0218 -8.9056 4.3354 22 6 10.2909 -10.2210 3.2143 23 7 10.6272 -10.6505 2.0187 24 14 11.1467 -10.9047 4.7274 25 1 10.1447 -11.5475 5.6149 26 1 12.1581 -11.9096 4.3123 27 1 11.8184 -9.7997 5.4578 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 2.4014 -1.2317 -4.3819 36 1 4.3355 -3.9389 -1.1728 37 1 5.2686 -3.6960 1.4816 38 1 3.8193 -4.7294 1.4893 39 1 4.8717 -6.2166 -0.1933 40 1 6.3207 -5.1827 -0.2007 41 1 4.3961 -7.6089 1.6876 42 1 5.3464 -7.4397 3.1835 43 1 4.2403 -6.1395 2.6800 44 1 6.5237 -8.0829 0.6201 45 1 7.7522 -6.7999 0.5048 46 1 8.9183 -9.0739 1.3600 47 1 11.3196 -11.3228 1.9220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713473811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:45 Heat of formation + Delta-G solvation = -47.726450 kcal Electronic energy + Delta-G solvation = -28330.297502 eV Core-core repulsion = 24129.036805 eV Total energy + Delta-G solvation = -4201.260698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.86943 -39.76534 -38.62481 -36.83941 -36.12560 -35.16429 -34.59583 -33.78098 -31.24005 -30.37306 -29.33994 -27.68569 -27.63833 -25.61776 -24.56762 -23.80184 -23.31523 -21.26418 -21.08302 -20.56147 -19.15013 -18.42463 -17.83530 -17.19617 -16.69085 -16.31191 -16.01414 -15.77514 -15.48711 -15.22826 -14.95634 -14.61756 -14.58226 -14.11483 -14.00478 -13.83592 -13.61805 -13.44722 -13.27172 -13.00495 -12.66909 -12.18847 -12.11210 -11.87772 -11.77582 -11.69682 -11.56002 -11.49477 -11.37798 -11.25319 -11.14062 -11.03260 -10.90881 -10.42754 -10.23851 -10.19573 -9.45725 -9.43314 -9.13742 -8.46367 -7.97406 -7.87363 -6.40284 -3.81001 0.72731 1.66200 2.13561 2.83043 3.03799 3.21446 3.27012 3.31585 3.61830 3.91760 4.04454 4.08170 4.27182 4.39364 4.58572 4.60374 4.78816 4.86582 5.00462 5.08920 5.14021 5.16317 5.26173 5.26845 5.34184 5.41480 5.42626 5.58652 5.65427 5.66462 5.71183 5.74945 5.81804 5.86414 5.93321 5.95052 6.02389 6.23743 6.29398 6.57122 6.96820 7.21310 7.31883 7.35751 7.56616 7.93768 8.07692 8.63377 9.19586 9.55818 10.07817 10.77402 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.001636 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.569967 B =17108.188500 C =17623.840391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C -0.147 4.147 4 C 0.056 3.944 5 O -0.197 6.197 6 C 0.173 3.827 7 N -0.463 5.463 8 C -0.078 4.078 9 C 0.603 3.397 10 O -0.532 6.532 11 N -0.710 5.710 12 C 0.121 3.879 13 C 0.044 3.956 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.255 0.745 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.015 0.985 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.089 0.911 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.027 19.956 -13.776 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 C -0.204 4.204 4 C -0.001 4.001 5 O -0.083 6.083 6 C -0.055 4.055 7 N -0.192 5.192 8 C -0.198 4.198 9 C 0.389 3.611 10 O -0.410 6.410 11 N -0.360 5.360 12 C -0.002 4.002 13 C -0.085 4.085 14 N -0.239 5.239 15 C -0.130 4.130 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.271 0.729 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.671 20.154 -12.185 30.055 hybrid contribution 0.077 -0.918 -1.081 1.420 sum -18.594 19.236 -13.266 29.863 Atomic orbital electron populations 1.21857 0.93041 1.02669 1.02802 1.20375 0.96838 0.96539 0.91247 1.21857 1.01740 0.93998 1.02790 1.23841 0.96745 0.95338 0.84140 1.84366 1.59003 1.48695 1.16202 1.28023 0.93298 0.85323 0.98882 1.70740 1.21268 1.25918 1.01292 1.21475 1.06586 0.99658 0.92034 1.16637 0.78311 0.79971 0.86218 1.90760 1.59529 1.67357 1.23320 1.45709 1.50790 1.28479 1.11067 1.21411 0.97975 0.93500 0.87302 1.22250 0.98291 0.94943 0.93003 1.61442 1.13810 1.27960 1.20665 1.22632 0.92769 0.98178 0.99420 1.21872 0.95226 0.94154 0.97191 1.19704 0.83951 0.83479 0.89949 1.90491 1.66583 1.62058 1.26909 1.41854 1.32881 1.35466 1.09884 1.19655 1.15677 1.19107 0.88410 0.87939 1.25259 0.97510 0.97151 0.98026 1.69604 1.31861 1.31018 1.21891 0.85915 0.78823 0.78555 0.80905 1.19936 1.21013 1.19893 0.92245 0.92130 0.90947 0.84625 0.92250 0.90942 0.92068 0.72921 0.75680 0.89901 0.90844 0.94444 0.90157 0.96609 0.88355 0.91842 0.93322 0.89287 0.77495 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.18 37.16 0.34 -0.61 16 2 C -0.03 -0.26 3.24 -91.77 -0.30 -0.56 16 3 C -0.15 -0.97 9.18 37.16 0.34 -0.63 16 4 C 0.06 0.53 5.95 -35.08 -0.21 0.32 16 5 O -0.20 -1.54 10.73 6.51 0.07 -1.47 16 6 C 0.17 1.11 13.19 51.96 0.69 1.79 16 7 N -0.46 -4.42 11.06 -11.48 -0.13 -4.54 16 8 C -0.08 -0.86 6.99 -83.02 -0.58 -1.44 16 9 C 0.60 7.62 7.81 -12.52 -0.10 7.52 16 10 O -0.53 -7.86 14.47 5.27 0.08 -7.78 16 11 N -0.71 -8.02 5.55 -61.39 -0.34 -8.36 16 12 C 0.12 1.51 5.60 -4.04 -0.02 1.49 16 13 C 0.04 0.55 5.07 -3.82 -0.02 0.53 16 14 N -0.51 -8.53 4.50 -244.36 -1.10 -9.63 16 15 C 0.02 0.29 8.96 60.06 0.54 0.83 16 16 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 17 C 0.44 10.45 7.47 -10.98 -0.08 10.37 16 18 O -0.58 -15.51 13.91 5.55 0.08 -15.43 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 1.37 5.52 -51.93 -0.29 1.09 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.26 0.27 8.06 -52.49 -0.42 -0.15 16 36 H 0.41 3.97 8.20 -40.82 -0.33 3.63 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 39 H 0.04 0.43 8.12 -51.92 -0.42 0.00 16 40 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 41 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 1.95 5.83 -51.93 -0.30 1.65 16 43 H 0.06 0.93 6.47 -51.93 -0.34 0.59 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 45 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 46 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -33.91 393.93 -6.34 -40.25 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.91 Total: 10.62 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 0.33 Total: 12.46 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.90 Total: -60.67 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.22 Total: -24.68 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.91 -6.34 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713473811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.479 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds