Wall clock time and date at job start Tue Mar 31 2020 20:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.47459 * 2 1 4 4 N 1.33679 * 126.27656 * 270.04447 * 3 2 1 5 5 C 1.30616 * 108.99866 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.15071 * 359.73284 * 5 4 3 7 7 C 1.35339 * 107.68528 * 0.43019 * 6 5 4 8 8 C 1.46718 * 126.64414 * 179.84009 * 7 6 5 9 9 O 1.21693 * 119.99971 * 179.68776 * 8 7 6 10 10 N 1.34773 * 120.00143 * 359.96114 * 8 7 6 11 11 C 1.46505 * 120.00095 * 179.72505 * 10 8 7 12 12 C 1.53005 * 109.46904 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47126 * 305.00057 * 12 11 10 14 14 C 1.53001 * 109.47233 * 65.00180 * 12 11 10 15 15 C 1.53001 * 109.46913 * 184.99955 * 12 11 10 16 16 N 1.46898 * 109.47205 * 175.00183 * 15 12 11 17 17 C 1.46897 * 111.00180 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47085 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00160 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00088 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99564 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00346 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99728 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00173 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47550 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47148 * 120.00580 * 25 23 21 28 28 H 1.48504 * 109.47390 * 240.00209 * 25 23 21 29 29 H 1.09004 * 109.47020 * 59.99843 * 1 2 3 30 30 H 1.08991 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46982 * 300.00254 * 1 2 3 32 32 H 1.08996 * 109.47185 * 240.00255 * 2 1 3 33 33 H 1.08999 * 109.47294 * 119.99779 * 2 1 3 34 34 H 1.08004 * 125.42841 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00112 * 359.72940 * 10 8 7 36 36 H 1.09003 * 109.47169 * 299.99748 * 11 10 8 37 37 H 1.08993 * 109.47199 * 60.00009 * 11 10 8 38 38 H 1.09002 * 109.46906 * 300.00156 * 14 12 11 39 39 H 1.09007 * 109.47102 * 59.99271 * 14 12 11 40 40 H 1.09001 * 109.47517 * 179.97438 * 14 12 11 41 41 H 1.09008 * 109.46959 * 295.00316 * 15 12 11 42 42 H 1.08999 * 109.47150 * 54.99747 * 15 12 11 43 43 H 1.00902 * 110.99942 * 303.95186 * 16 15 12 44 44 H 1.09006 * 109.47306 * 299.99956 * 17 16 15 45 45 H 1.09000 * 109.46899 * 59.99668 * 17 16 15 46 46 H 0.97002 * 119.99939 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00148 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2953 2.1668 -1.0777 5 6 2.7108 3.3428 -0.6897 6 8 2.7205 3.3857 0.6462 7 6 2.3015 2.1812 1.0993 8 6 2.1587 1.7745 2.5017 9 8 1.7637 0.6561 2.7737 10 7 2.4596 2.6415 3.4888 11 6 2.3112 2.2374 4.8891 12 6 2.7152 3.3982 5.8004 13 1 3.7235 3.7251 5.5469 14 6 1.7389 4.5605 5.6089 15 6 2.6799 2.9375 7.2590 16 7 3.1817 4.0132 8.1245 17 6 3.1618 3.6060 9.5357 18 6 3.6829 4.7321 10.3909 19 8 4.0357 5.7718 9.8755 20 7 3.7570 4.5838 11.7285 21 6 4.2305 5.6085 12.5066 22 1 4.5439 6.5346 12.0477 23 6 4.3064 5.4559 13.8856 24 7 3.9246 4.3292 14.4440 25 14 4.9523 6.8517 14.9456 26 1 5.3142 8.0035 14.0809 27 1 3.9023 7.2679 15.9097 28 1 6.1535 6.3938 15.6891 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9963 4.1532 -1.3441 35 1 2.7743 3.5330 3.2720 36 1 1.2723 1.9693 5.0818 37 1 2.9513 1.3782 5.0892 38 1 1.7640 4.8886 4.5698 39 1 0.7304 4.2335 5.8624 40 1 2.0264 5.3873 6.2584 41 1 1.6547 2.6946 7.5386 42 1 3.3074 2.0541 7.3763 43 1 4.1072 4.3010 7.8439 44 1 2.1398 3.3680 9.8309 45 1 3.7925 2.7270 9.6692 46 1 3.4745 3.7524 12.1407 47 1 3.9779 4.2225 15.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715247063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:40 Heat of formation + Delta-G solvation = -62.676271 kcal Electronic energy + Delta-G solvation = -27926.557686 eV Core-core repulsion = 23724.648715 eV Total energy + Delta-G solvation = -4201.908971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.92687 -40.01613 -38.40685 -37.34594 -36.19572 -34.94770 -33.88998 -33.38350 -32.46507 -31.21286 -30.17204 -27.45455 -27.03586 -25.22617 -24.49049 -23.97556 -23.06227 -21.67928 -21.07429 -20.55727 -19.26653 -18.57656 -17.87713 -17.35799 -16.97139 -16.62315 -15.99466 -15.86879 -15.37440 -15.33927 -14.88602 -14.72506 -14.43697 -14.34195 -14.14285 -13.80162 -13.69156 -13.48270 -13.25581 -13.10669 -12.67350 -12.43393 -11.98929 -11.93361 -11.71682 -11.58492 -11.53709 -11.46799 -11.32508 -11.20828 -11.13041 -11.02693 -10.94322 -10.49428 -10.35582 -10.23844 -9.66738 -9.53493 -9.30428 -8.48713 -8.08577 -7.97417 -6.43213 -3.84123 0.35140 1.95490 1.97650 2.65431 2.74807 3.15237 3.25943 3.33078 3.54084 3.89199 4.05400 4.20112 4.26358 4.28064 4.63766 4.71410 4.83966 4.90496 4.93545 5.01981 5.06219 5.13872 5.23992 5.26244 5.28465 5.39091 5.49039 5.59393 5.63135 5.65330 5.70290 5.78528 5.81997 5.84082 5.87026 5.95997 5.96401 6.12168 6.24843 6.34941 6.87235 7.13054 7.16347 7.53990 7.60891 7.61607 8.05013 8.59600 9.16456 9.52857 10.04043 10.74574 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001486 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.914749 B =18842.412959 C =19422.040294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.085 3.915 4 N -0.492 5.492 5 C 0.204 3.796 6 O -0.191 6.191 7 C -0.116 4.116 8 C 0.607 3.393 9 O -0.511 6.511 10 N -0.713 5.713 11 C 0.123 3.877 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.141 4.141 15 C 0.066 3.934 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.257 0.743 35 H 0.406 0.594 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.349 0.651 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -7.338 -28.217 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.039 4.039 4 N -0.221 5.221 5 C -0.022 4.022 6 O -0.077 6.077 7 C -0.171 4.171 8 C 0.392 3.608 9 O -0.389 6.389 10 N -0.364 5.364 11 C 0.000 4.000 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.199 4.199 15 C -0.064 4.064 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.273 0.727 35 H 0.242 0.758 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.168 0.832 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.323 -7.279 -28.667 30.052 hybrid contribution 1.196 0.369 1.326 1.824 sum -4.127 -6.911 -27.340 28.501 Atomic orbital electron populations 1.21635 0.93645 1.02447 1.02020 1.20190 0.96770 0.87652 1.04506 1.22102 0.97254 0.98244 0.86302 1.70360 1.16985 1.03321 1.31441 1.28389 0.96850 0.97580 0.79346 1.84497 1.64903 1.33765 1.24558 1.22933 1.12571 0.85249 0.96319 1.16287 0.78249 0.84885 0.81330 1.90883 1.46621 1.19519 1.81843 1.45911 1.67074 1.16989 1.06449 1.21524 1.02513 0.97544 0.78425 1.21353 1.00891 0.95262 0.94454 0.90395 1.21773 0.98677 0.98589 1.00816 1.21889 1.00955 0.92461 0.91094 1.60027 1.31905 1.36752 1.01160 1.21667 1.01578 0.96227 0.88713 1.19807 0.85123 0.89326 0.83128 1.90517 1.53763 1.29622 1.72908 1.41877 1.56693 1.16784 1.04699 1.19758 1.38853 0.96119 0.88180 0.87861 1.25267 0.97618 0.97865 0.97216 1.69621 1.47823 1.24881 1.11949 0.85796 0.78280 0.80718 0.79515 1.19224 1.20739 1.20775 0.92707 0.91531 0.92356 0.89980 0.88110 0.72696 0.75826 0.90604 0.90876 0.93754 0.92674 0.90264 0.90631 0.95180 0.83217 0.89552 0.93850 0.77451 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 37.15 0.37 -0.71 16 2 C -0.05 -0.45 5.93 -27.88 -0.17 -0.62 16 3 C 0.08 0.82 6.41 -82.47 -0.53 0.29 16 4 N -0.49 -4.37 11.26 -10.88 -0.12 -4.50 16 5 C 0.20 1.19 13.21 52.25 0.69 1.88 16 6 O -0.19 -1.45 10.57 4.44 0.05 -1.40 16 7 C -0.12 -1.10 7.18 -36.84 -0.26 -1.36 16 8 C 0.61 6.21 7.79 -12.84 -0.10 6.11 16 9 O -0.51 -6.34 14.79 5.20 0.08 -6.27 16 10 N -0.71 -5.99 5.28 -61.60 -0.33 -6.31 16 11 C 0.12 1.06 5.07 -4.04 -0.02 1.04 16 12 C -0.10 -0.91 2.57 -90.62 -0.23 -1.14 16 13 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.14 -1.36 8.95 37.16 0.33 -1.03 16 15 C 0.07 0.73 5.07 -3.82 -0.02 0.71 16 16 N -0.67 -9.99 5.58 -115.06 -0.64 -10.63 16 17 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 18 C 0.44 10.23 7.82 -10.98 -0.09 10.15 16 19 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 25 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.94 6.47 -51.93 -0.34 0.60 16 34 H 0.26 0.10 8.06 -52.48 -0.42 -0.32 16 35 H 0.41 2.83 7.45 -40.82 -0.30 2.52 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.36 7.18 -51.93 -0.37 -0.02 16 39 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 41 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.35 5.41 8.43 -39.29 -0.33 5.08 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -33.82 400.11 -6.58 -40.40 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.08 Total: 12.04 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.30 Total: 8.17 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.42 Total: -59.36 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.21 Total: -23.18 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.82 -6.58 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715247063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.272 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds