Wall clock time and date at job start Tue Mar 31 2020 20:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 109.47459 * 2 1 4 4 N 1.33679 * 126.27656 * 270.04447 * 3 2 1 5 5 C 1.30616 * 108.99866 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.15071 * 359.73284 * 5 4 3 7 7 C 1.35339 * 107.68528 * 0.43019 * 6 5 4 8 8 C 1.46718 * 126.64414 * 179.84009 * 7 6 5 9 9 O 1.21693 * 119.99971 * 179.68776 * 8 7 6 10 10 N 1.34773 * 120.00143 * 359.96114 * 8 7 6 11 11 C 1.46505 * 120.00095 * 179.72505 * 10 8 7 12 12 C 1.53005 * 109.46904 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47126 * 305.00057 * 12 11 10 14 14 C 1.53001 * 109.47233 * 65.00180 * 12 11 10 15 15 C 1.53001 * 109.46913 * 184.99955 * 12 11 10 16 16 N 1.46898 * 109.47205 * 175.00183 * 15 12 11 17 17 C 1.46897 * 111.00180 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47085 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00160 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00088 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99564 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00346 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99728 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00173 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47550 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47148 * 120.00580 * 25 23 21 28 28 H 1.48504 * 109.47390 * 240.00209 * 25 23 21 29 29 H 1.09004 * 109.47020 * 59.99843 * 1 2 3 30 30 H 1.08991 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46982 * 300.00254 * 1 2 3 32 32 H 1.08996 * 109.47185 * 240.00255 * 2 1 3 33 33 H 1.08999 * 109.47294 * 119.99779 * 2 1 3 34 34 H 1.08004 * 125.42841 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00112 * 359.72940 * 10 8 7 36 36 H 1.09003 * 109.47169 * 299.99748 * 11 10 8 37 37 H 1.08993 * 109.47199 * 60.00009 * 11 10 8 38 38 H 1.09002 * 109.46906 * 300.00156 * 14 12 11 39 39 H 1.09007 * 109.47102 * 59.99271 * 14 12 11 40 40 H 1.09001 * 109.47517 * 179.97438 * 14 12 11 41 41 H 1.09008 * 109.46959 * 295.00316 * 15 12 11 42 42 H 1.08999 * 109.47150 * 54.99747 * 15 12 11 43 43 H 1.00902 * 110.99942 * 303.95186 * 16 15 12 44 44 H 1.09006 * 109.47306 * 299.99956 * 17 16 15 45 45 H 1.09000 * 109.46899 * 59.99668 * 17 16 15 46 46 H 0.97002 * 119.99939 * 359.97438 * 20 18 17 47 47 H 0.96996 * 120.00148 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2953 2.1668 -1.0777 5 6 2.7108 3.3428 -0.6897 6 8 2.7205 3.3857 0.6462 7 6 2.3015 2.1812 1.0993 8 6 2.1587 1.7745 2.5017 9 8 1.7637 0.6561 2.7737 10 7 2.4596 2.6415 3.4888 11 6 2.3112 2.2374 4.8891 12 6 2.7152 3.3982 5.8004 13 1 3.7235 3.7251 5.5469 14 6 1.7389 4.5605 5.6089 15 6 2.6799 2.9375 7.2590 16 7 3.1817 4.0132 8.1245 17 6 3.1618 3.6060 9.5357 18 6 3.6829 4.7321 10.3909 19 8 4.0357 5.7718 9.8755 20 7 3.7570 4.5838 11.7285 21 6 4.2305 5.6085 12.5066 22 1 4.5439 6.5346 12.0477 23 6 4.3064 5.4559 13.8856 24 7 3.9246 4.3292 14.4440 25 14 4.9523 6.8517 14.9456 26 1 5.3142 8.0035 14.0809 27 1 3.9023 7.2679 15.9097 28 1 6.1535 6.3938 15.6891 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9963 4.1532 -1.3441 35 1 2.7743 3.5330 3.2720 36 1 1.2723 1.9693 5.0818 37 1 2.9513 1.3782 5.0892 38 1 1.7640 4.8886 4.5698 39 1 0.7304 4.2335 5.8624 40 1 2.0264 5.3873 6.2584 41 1 1.6547 2.6946 7.5386 42 1 3.3074 2.0541 7.3763 43 1 4.1072 4.3010 7.8439 44 1 2.1398 3.3680 9.8309 45 1 3.7925 2.7270 9.6692 46 1 3.4745 3.7524 12.1407 47 1 3.9779 4.2225 15.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715247063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:39 Heat of formation + Delta-G solvation = -90.971318 kcal Electronic energy + Delta-G solvation = -27927.784651 eV Core-core repulsion = 23724.648715 eV Total energy + Delta-G solvation = -4203.135936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.50584 -40.78217 -40.15110 -38.34139 -36.86621 -36.15035 -35.64053 -34.01601 -33.49649 -33.15984 -30.83069 -28.82971 -27.78662 -26.65331 -25.48021 -24.67542 -24.10417 -22.35786 -21.81320 -21.41133 -20.93432 -19.90689 -19.26526 -17.96921 -17.83258 -17.50016 -17.20073 -16.97782 -16.56521 -16.31312 -16.05105 -15.89239 -15.56743 -15.41717 -15.18663 -15.02073 -14.67968 -14.41237 -14.39341 -13.94591 -13.73969 -13.56743 -13.41556 -13.16710 -13.01901 -12.84660 -12.53926 -12.40355 -12.22468 -12.12637 -12.11392 -12.03833 -11.96777 -11.95448 -11.73164 -11.50834 -11.24426 -10.39496 -10.33820 -10.01001 -9.94507 -9.28657 -8.46586 -5.95324 -0.27106 1.36986 1.38021 1.38541 1.42395 1.56489 1.92894 2.06008 2.08541 2.29873 2.95076 3.09334 3.20973 3.52786 3.59672 3.65902 3.85307 3.96272 4.04867 4.26889 4.29903 4.33847 4.38016 4.45343 4.48403 4.49850 4.59285 4.62454 4.72760 4.77900 4.83153 4.94974 4.98183 5.05060 5.06467 5.16307 5.18835 5.30701 5.35585 5.41464 5.51658 5.89323 6.10950 6.21057 6.43025 6.53368 6.60443 6.90083 7.13052 7.56988 8.12070 8.71017 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001486 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.914749 B =18842.412959 C =19422.040294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C 0.076 3.924 4 N -0.524 5.524 5 C 0.228 3.772 6 O -0.192 6.192 7 C -0.136 4.136 8 C 0.606 3.394 9 O -0.540 6.540 10 N -0.704 5.704 11 C 0.131 3.869 12 C -0.088 4.088 13 H 0.083 0.917 14 C -0.137 4.137 15 C 0.067 3.933 16 N -0.678 5.678 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.308 0.692 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.344 0.656 44 H 0.103 0.897 45 H 0.066 0.934 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -7.267 -29.227 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.047 4.047 4 N -0.253 5.253 5 C 0.003 3.997 6 O -0.078 6.078 7 C -0.191 4.191 8 C 0.392 3.608 9 O -0.420 6.420 10 N -0.355 5.355 11 C 0.007 3.993 12 C -0.107 4.107 13 H 0.101 0.899 14 C -0.195 4.195 15 C -0.062 4.062 16 N -0.310 5.310 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.196 1.196 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.322 0.678 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.163 0.837 44 H 0.121 0.879 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.237 -7.226 -29.682 30.994 hybrid contribution 1.169 0.384 1.512 1.949 sum -4.068 -6.843 -28.170 29.273 Atomic orbital electron populations 1.21582 0.93159 1.03104 1.01272 1.20193 0.97167 0.87541 1.04300 1.22307 0.96968 0.98664 0.86778 1.70380 1.18792 1.04620 1.31490 1.29587 0.93465 0.97625 0.78984 1.84504 1.64982 1.32912 1.25429 1.22724 1.14319 0.86133 0.95950 1.16394 0.77864 0.84640 0.81895 1.90860 1.48065 1.20673 1.82409 1.45821 1.66481 1.17123 1.06094 1.21407 1.02373 0.97157 0.78343 1.21211 1.01032 0.95102 0.93384 0.89889 1.21715 0.98622 0.97877 1.01247 1.21965 1.01222 0.91759 0.91293 1.60020 1.31801 1.38682 1.00535 1.21524 1.02433 0.94001 0.88784 1.20907 0.83371 0.90276 0.82905 1.90486 1.55067 1.31809 1.73557 1.41952 1.57270 1.16477 1.05466 1.19715 1.40954 0.96398 0.89293 0.90291 1.26038 0.97270 1.00228 0.97755 1.69679 1.47857 1.26050 1.12569 0.84864 0.78133 0.77615 0.77675 1.19772 1.19679 1.19613 0.92554 0.90218 0.93823 0.89137 0.89251 0.67782 0.74890 0.90821 0.90845 0.92158 0.92804 0.92743 0.90102 0.93799 0.83711 0.87858 0.91576 0.76983 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.89 71.98 0.71 -1.33 16 2 C -0.05 -0.92 5.93 29.85 0.18 -0.75 16 3 C 0.08 1.43 6.41 41.84 0.27 1.70 16 4 N -0.52 -8.54 11.26 -303.12 -3.41 -11.95 16 5 C 0.23 2.06 13.21 130.42 1.72 3.79 16 6 O -0.19 -2.56 10.57 -7.04 -0.07 -2.63 16 7 C -0.14 -2.49 7.18 24.05 0.17 -2.31 16 8 C 0.61 12.14 7.79 86.46 0.67 12.82 16 9 O -0.54 -13.51 14.79 -4.33 -0.06 -13.57 16 10 N -0.70 -11.04 5.28 -467.03 -2.47 -13.50 16 11 C 0.13 2.06 5.07 86.38 0.44 2.50 16 12 C -0.09 -1.46 2.57 -10.79 -0.03 -1.49 16 13 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 14 C -0.14 -2.49 8.95 71.98 0.64 -1.85 16 15 C 0.07 1.35 5.07 86.30 0.44 1.79 16 16 N -0.68 -19.61 5.58 -517.93 -2.89 -22.50 16 17 C 0.07 2.13 6.17 85.56 0.53 2.66 16 18 C 0.44 20.48 7.82 87.65 0.69 21.16 16 19 O -0.62 -33.97 15.78 -3.05 -0.05 -34.02 16 20 N -0.57 -29.25 5.29 -306.98 -1.62 -30.87 16 21 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 25 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.72 6.47 -2.39 -0.02 1.70 16 34 H 0.31 -1.06 8.06 -2.91 -0.02 -1.09 16 35 H 0.41 5.12 7.45 -92.71 -0.69 4.43 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 0.88 7.18 -2.39 -0.02 0.86 16 39 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.05 1.28 7.75 -2.39 -0.02 1.27 16 41 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.34 10.46 8.43 -89.69 -0.76 9.70 16 44 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 47 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -74.54 400.11 -1.71 -76.26 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -1.16 Total: 36.88 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.71 Total: 20.34 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -10.11 Total: -128.03 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.19 Total: -50.22 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.54 -1.71 -76.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715247063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.716 kcal (2) G-P(sol) polarization free energy of solvation -74.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds