Wall clock time and date at job start Tue Mar 31 2020 20:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.46843 * 2 1 4 4 N 1.29941 * 125.37859 * 90.00353 * 3 2 1 5 5 C 1.36061 * 108.47919 * 180.02562 * 4 3 2 6 6 C 1.47420 * 126.44804 * 179.97438 * 5 4 3 7 7 O 1.21611 * 119.99831 * 173.48932 * 6 5 4 8 8 N 1.34772 * 120.00248 * 353.48386 * 6 5 4 9 9 C 1.46505 * 119.99753 * 3.44291 * 8 6 5 10 10 C 1.46500 * 120.00165 * 183.44136 * 8 6 5 11 11 H 1.09001 * 109.46957 * 0.02562 * 10 8 6 12 12 C 1.53000 * 109.47036 * 120.00549 * 10 8 6 13 13 C 1.52999 * 109.46854 * 240.00164 * 10 8 6 14 14 N 1.46894 * 109.47294 * 55.00323 * 13 10 8 15 15 C 1.46908 * 111.00198 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47039 * 179.97438 * 15 14 13 17 17 O 1.21294 * 120.00528 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99731 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99933 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99750 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00313 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46851 * 90.00416 * 23 21 19 25 25 H 1.48498 * 109.47393 * 209.99919 * 23 21 19 26 26 H 1.48501 * 109.47154 * 330.00270 * 23 21 19 27 27 C 1.36088 * 107.10200 * 359.97438 * 5 4 3 28 28 O 1.34047 * 125.37976 * 270.04538 * 3 2 1 29 29 H 1.08997 * 109.47186 * 60.00227 * 1 2 3 30 30 H 1.09007 * 109.46526 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47189 * 299.99117 * 1 2 3 32 32 H 1.09003 * 109.46725 * 240.00344 * 2 1 3 33 33 H 1.08991 * 109.47081 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47205 * 84.08781 * 9 8 6 35 35 H 1.09000 * 109.47024 * 204.08945 * 9 8 6 36 36 H 1.09001 * 109.47049 * 324.09180 * 9 8 6 37 37 H 1.08991 * 109.47485 * 59.99391 * 12 10 8 38 38 H 1.09003 * 109.46898 * 180.02562 * 12 10 8 39 39 H 1.09006 * 109.46395 * 299.99590 * 12 10 8 40 40 H 1.09003 * 109.46963 * 175.00438 * 13 10 8 41 41 H 1.08999 * 109.47162 * 294.99665 * 13 10 8 42 42 H 1.00895 * 111.00631 * 56.04262 * 14 13 10 43 43 H 1.09004 * 109.46552 * 299.99626 * 15 14 13 44 44 H 1.08997 * 109.46910 * 59.99507 * 15 14 13 45 45 H 0.96994 * 119.99922 * 359.97438 * 18 16 15 46 46 H 0.96998 * 119.99991 * 179.97438 * 22 21 19 47 47 H 1.08003 * 126.52769 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1301 1.0595 5 6 2.7164 3.3577 0.6639 6 6 3.1100 4.4730 1.5440 7 8 3.5929 5.4823 1.0675 8 7 2.9345 4.3742 2.8766 9 6 2.4232 3.1304 3.4578 10 6 3.2551 5.5106 3.7439 11 1 3.6185 6.3398 3.1369 12 6 1.9982 5.9453 4.5003 13 6 4.3361 5.0987 4.7453 14 7 5.4987 4.5688 4.0205 15 6 6.5596 4.1628 4.9520 16 6 7.7328 3.6252 4.1738 17 8 7.6896 3.5847 2.9623 18 7 8.8304 3.1903 4.8239 19 6 9.8978 2.7017 4.1159 20 1 9.8594 2.6657 3.0372 21 6 11.0296 2.2539 4.7861 22 7 11.0766 2.2983 6.0986 23 14 12.4838 1.5875 3.8215 24 1 13.4165 2.6980 3.5018 25 1 13.1910 0.5659 4.6347 26 1 12.0001 0.9689 2.5611 27 6 2.7182 3.3622 -0.6969 28 8 2.2902 2.1529 -1.0929 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2474 2.4327 3.6056 35 1 1.9519 3.3445 4.4171 36 1 1.6898 2.6887 2.7831 37 1 1.6344 5.1163 5.1072 38 1 2.2367 6.7910 5.1453 39 1 1.2281 6.2387 3.7868 40 1 4.6380 5.9667 5.3314 41 1 3.9415 4.3306 5.4104 42 1 5.8436 5.2396 3.3503 43 1 6.8769 5.0247 5.5392 44 1 6.1808 3.3884 5.6189 45 1 8.8653 3.2238 5.7926 46 1 11.8665 1.9853 6.5665 47 1 3.0082 4.1826 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715333866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:08 Heat of formation + Delta-G solvation = -38.371995 kcal Electronic energy + Delta-G solvation = -29573.112842 eV Core-core repulsion = 25372.257784 eV Total energy + Delta-G solvation = -4200.855058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54612 -39.80161 -38.20722 -36.74232 -35.30101 -34.54493 -34.15234 -33.67388 -31.53093 -31.12185 -29.58183 -27.53956 -26.75865 -25.10696 -24.69058 -24.35859 -23.07686 -21.72101 -20.79163 -19.46606 -19.03323 -17.84097 -17.72487 -17.05778 -16.78035 -16.38827 -15.80420 -15.29813 -15.21952 -14.90444 -14.74858 -14.49851 -14.28847 -13.93340 -13.72063 -13.62912 -13.47973 -13.17652 -13.01670 -12.76066 -12.58587 -12.40357 -12.24775 -12.15050 -11.90455 -11.66452 -11.57799 -11.44765 -11.41706 -11.26228 -11.00303 -10.85545 -10.47806 -10.36356 -10.17727 -9.94425 -9.46408 -9.12738 -8.51017 -8.32839 -7.96280 -7.89826 -6.37553 -3.77951 1.05871 1.93684 2.43923 2.98204 3.20634 3.28624 3.35218 3.38117 3.69435 3.97122 4.12896 4.33961 4.56144 4.58450 4.75855 4.84462 4.88578 5.00554 5.08077 5.15108 5.25657 5.29691 5.31817 5.39018 5.42145 5.46410 5.50859 5.60435 5.62619 5.63372 5.64378 5.78630 5.84245 5.91522 6.03276 6.05011 6.07336 6.26843 6.32474 6.67934 7.29839 7.32876 7.51732 7.59309 7.74901 8.11374 8.24493 8.66856 9.22836 9.59589 10.12013 10.80469 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.002817 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.502532 B = 9937.400845 C =11545.365663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C 0.192 3.808 4 N -0.451 5.451 5 C -0.058 4.058 6 C 0.607 3.393 7 O -0.542 6.542 8 N -0.574 5.574 9 C 0.078 3.922 10 C 0.137 3.863 11 H 0.100 0.900 12 C -0.158 4.158 13 C 0.049 3.951 14 N -0.663 5.663 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.580 6.580 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.007 3.993 28 O -0.197 6.197 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.351 0.649 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.382 -0.126 -5.405 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 C -0.017 4.017 4 N -0.181 5.181 5 C -0.178 4.178 6 C 0.394 3.606 7 O -0.420 6.420 8 N -0.305 5.305 9 C -0.064 4.064 10 C 0.033 3.967 11 H 0.118 0.882 12 C -0.217 4.217 13 C -0.081 4.081 14 N -0.295 5.295 15 C -0.081 4.081 16 C 0.227 3.773 17 O -0.463 6.463 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.066 4.066 28 O -0.083 6.083 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.170 0.830 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -24.330 -0.549 -5.774 25.012 hybrid contribution 1.470 0.742 0.017 1.647 sum -22.860 0.193 -5.757 23.575 Atomic orbital electron populations 1.21785 0.93070 1.03016 1.02893 1.20113 0.96754 0.84117 1.05605 1.26475 0.99636 0.96970 0.78585 1.70959 1.15737 1.02617 1.28810 1.21742 1.08930 0.94228 0.92913 1.16659 0.77750 0.84507 0.81659 1.90792 1.45197 1.30879 1.75132 1.47280 1.63280 1.14840 1.05060 1.22111 1.00349 0.85292 0.98689 1.21143 0.94433 0.89386 0.91715 0.88178 1.22099 0.97357 1.01706 1.00507 1.22343 0.91866 0.98491 0.95428 1.60000 1.06605 1.46534 1.16380 1.21658 0.92056 0.99678 0.94659 1.19836 0.84281 0.84616 0.88524 1.90541 1.81884 1.59969 1.13926 1.41857 1.13635 1.55500 1.09318 1.19695 0.92482 1.37197 0.93272 0.88027 1.25246 0.99173 0.97868 0.95725 1.69615 1.30422 1.47859 1.06641 0.85865 0.80663 0.78532 0.79280 1.20449 1.20934 1.19432 1.25233 0.99043 0.86597 0.95752 1.84366 1.63425 1.22564 1.37983 0.92219 0.90853 0.91719 0.88735 0.87287 0.91987 0.92326 0.88597 0.91984 0.91236 0.92110 0.94460 0.90822 0.82991 0.94045 0.89805 0.77520 0.91947 0.75472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.03 -0.19 6.56 -27.88 -0.18 -0.37 16 3 C 0.19 2.09 7.56 -13.08 -0.10 1.99 16 4 N -0.45 -5.90 7.86 -7.66 -0.06 -5.96 16 5 C -0.06 -0.84 6.66 -83.03 -0.55 -1.39 16 6 C 0.61 9.76 7.67 -12.52 -0.10 9.67 16 7 O -0.54 -9.97 16.23 5.27 0.09 -9.88 16 8 N -0.57 -7.99 2.48 -175.20 -0.44 -8.42 16 9 C 0.08 0.95 8.73 59.85 0.52 1.47 16 10 C 0.14 1.70 2.87 -67.93 -0.20 1.51 16 11 H 0.10 1.41 6.90 -51.93 -0.36 1.05 16 12 C -0.16 -1.42 9.18 37.16 0.34 -1.08 16 13 C 0.05 0.64 4.98 -3.83 -0.02 0.62 16 14 N -0.66 -11.72 5.85 -115.06 -0.67 -12.39 16 15 C 0.05 0.98 6.17 -4.97 -0.03 0.95 16 16 C 0.44 11.00 7.82 -10.99 -0.09 10.91 16 17 O -0.58 -16.72 15.78 5.55 0.09 -16.63 16 18 N -0.57 -14.91 5.29 -10.96 -0.06 -14.96 16 19 C -0.30 -8.56 9.68 -14.94 -0.14 -8.71 16 20 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.16 13.05 55.50 0.72 -24.44 16 23 Si 0.93 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.01 0.09 11.95 29.96 0.36 0.45 16 28 O -0.20 -2.25 10.73 6.51 0.07 -2.18 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.57 6.44 -51.93 -0.33 0.24 16 36 H 0.10 1.14 5.30 -51.93 -0.28 0.87 16 37 H 0.06 0.50 6.67 -51.93 -0.35 0.16 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 42 H 0.35 6.85 8.43 -39.29 -0.33 6.51 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.23 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -35.87 395.94 -6.19 -42.06 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -6.96 Total: 14.14 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 0.09 Total: 16.09 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.50 Total: -66.18 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.24 Total: -28.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.87 -6.19 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715333866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.690 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds