Wall clock time and date at job start Tue Mar 31 2020 20:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.46843 * 2 1 4 4 N 1.29941 * 125.37859 * 90.00353 * 3 2 1 5 5 C 1.36061 * 108.47919 * 180.02562 * 4 3 2 6 6 C 1.47420 * 126.44804 * 179.97438 * 5 4 3 7 7 O 1.21611 * 119.99831 * 173.48932 * 6 5 4 8 8 N 1.34772 * 120.00248 * 353.48386 * 6 5 4 9 9 C 1.46505 * 119.99753 * 3.44291 * 8 6 5 10 10 C 1.46500 * 120.00165 * 183.44136 * 8 6 5 11 11 H 1.09001 * 109.46957 * 0.02562 * 10 8 6 12 12 C 1.53000 * 109.47036 * 120.00549 * 10 8 6 13 13 C 1.52999 * 109.46854 * 240.00164 * 10 8 6 14 14 N 1.46894 * 109.47294 * 55.00323 * 13 10 8 15 15 C 1.46908 * 111.00198 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47039 * 179.97438 * 15 14 13 17 17 O 1.21294 * 120.00528 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99731 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99933 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00223 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99750 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00313 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46851 * 90.00416 * 23 21 19 25 25 H 1.48498 * 109.47393 * 209.99919 * 23 21 19 26 26 H 1.48501 * 109.47154 * 330.00270 * 23 21 19 27 27 C 1.36088 * 107.10200 * 359.97438 * 5 4 3 28 28 O 1.34047 * 125.37976 * 270.04538 * 3 2 1 29 29 H 1.08997 * 109.47186 * 60.00227 * 1 2 3 30 30 H 1.09007 * 109.46526 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47189 * 299.99117 * 1 2 3 32 32 H 1.09003 * 109.46725 * 240.00344 * 2 1 3 33 33 H 1.08991 * 109.47081 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47205 * 84.08781 * 9 8 6 35 35 H 1.09000 * 109.47024 * 204.08945 * 9 8 6 36 36 H 1.09001 * 109.47049 * 324.09180 * 9 8 6 37 37 H 1.08991 * 109.47485 * 59.99391 * 12 10 8 38 38 H 1.09003 * 109.46898 * 180.02562 * 12 10 8 39 39 H 1.09006 * 109.46395 * 299.99590 * 12 10 8 40 40 H 1.09003 * 109.46963 * 175.00438 * 13 10 8 41 41 H 1.08999 * 109.47162 * 294.99665 * 13 10 8 42 42 H 1.00895 * 111.00631 * 56.04262 * 14 13 10 43 43 H 1.09004 * 109.46552 * 299.99626 * 15 14 13 44 44 H 1.08997 * 109.46910 * 59.99507 * 15 14 13 45 45 H 0.96994 * 119.99922 * 359.97438 * 18 16 15 46 46 H 0.96998 * 119.99991 * 179.97438 * 22 21 19 47 47 H 1.08003 * 126.52769 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1301 1.0595 5 6 2.7164 3.3577 0.6639 6 6 3.1100 4.4730 1.5440 7 8 3.5929 5.4823 1.0675 8 7 2.9345 4.3742 2.8766 9 6 2.4232 3.1304 3.4578 10 6 3.2551 5.5106 3.7439 11 1 3.6185 6.3398 3.1369 12 6 1.9982 5.9453 4.5003 13 6 4.3361 5.0987 4.7453 14 7 5.4987 4.5688 4.0205 15 6 6.5596 4.1628 4.9520 16 6 7.7328 3.6252 4.1738 17 8 7.6896 3.5847 2.9623 18 7 8.8304 3.1903 4.8239 19 6 9.8978 2.7017 4.1159 20 1 9.8594 2.6657 3.0372 21 6 11.0296 2.2539 4.7861 22 7 11.0766 2.2983 6.0986 23 14 12.4838 1.5875 3.8215 24 1 13.4165 2.6980 3.5018 25 1 13.1910 0.5659 4.6347 26 1 12.0001 0.9689 2.5611 27 6 2.7182 3.3622 -0.6969 28 8 2.2902 2.1529 -1.0929 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2474 2.4327 3.6056 35 1 1.9519 3.3445 4.4171 36 1 1.6898 2.6887 2.7831 37 1 1.6344 5.1163 5.1072 38 1 2.2367 6.7910 5.1453 39 1 1.2281 6.2387 3.7868 40 1 4.6380 5.9667 5.3314 41 1 3.9415 4.3306 5.4104 42 1 5.8436 5.2396 3.3503 43 1 6.8769 5.0247 5.5392 44 1 6.1808 3.3884 5.6189 45 1 8.8653 3.2238 5.7926 46 1 11.8665 1.9853 6.5665 47 1 3.0082 4.1826 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715333866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:06 Heat of formation + Delta-G solvation = -66.801882 kcal Electronic energy + Delta-G solvation = -29574.345655 eV Core-core repulsion = 25372.257784 eV Total energy + Delta-G solvation = -4202.087871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.47087 -40.94224 -40.14173 -37.97583 -36.34562 -36.05522 -35.46820 -34.83020 -33.30707 -32.50685 -30.43643 -28.99314 -27.79923 -26.73018 -25.68052 -25.19283 -24.47998 -22.64217 -21.71868 -21.11940 -20.34254 -19.90830 -18.76720 -18.04218 -17.96047 -17.69903 -17.20378 -16.71606 -16.47373 -16.32778 -15.93447 -15.72239 -15.46850 -15.19623 -15.13424 -14.92228 -14.51549 -14.42141 -14.11927 -13.88096 -13.56337 -13.54520 -13.37644 -13.31964 -13.10762 -12.89394 -12.79396 -12.62206 -12.57294 -12.44923 -12.26011 -12.14252 -12.02534 -11.83216 -11.54502 -11.51008 -11.05533 -10.40119 -10.10514 -10.04643 -9.54402 -9.30332 -8.49560 -5.98507 0.07540 0.98007 1.35250 1.38681 1.51900 1.57613 1.96392 2.02192 2.25251 2.27104 2.82900 2.90899 3.17218 3.46883 3.59565 3.78662 3.86131 4.13979 4.22622 4.27496 4.29967 4.31987 4.36039 4.37704 4.47564 4.52616 4.58214 4.60315 4.64826 4.70360 4.81465 4.86250 4.98975 5.01367 5.06249 5.09497 5.23396 5.32294 5.37227 5.37488 5.66216 5.86584 6.09055 6.29566 6.29878 6.50779 6.57656 7.09361 7.09827 7.52758 8.09349 8.67993 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.002817 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.502532 B = 9937.400845 C =11545.365663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.028 4.028 3 C 0.196 3.804 4 N -0.470 5.470 5 C -0.092 4.092 6 C 0.594 3.406 7 O -0.579 6.579 8 N -0.573 5.573 9 C 0.084 3.916 10 C 0.133 3.867 11 H 0.078 0.922 12 C -0.147 4.147 13 C 0.052 3.948 14 N -0.680 5.680 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.267 1.267 26 H -0.275 1.275 27 C 0.013 3.987 28 O -0.196 6.196 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.037 0.963 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.336 0.664 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.397 0.603 46 H 0.279 0.721 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.415 -0.982 -4.259 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.013 4.013 4 N -0.200 5.200 5 C -0.211 4.211 6 C 0.382 3.618 7 O -0.461 6.461 8 N -0.302 5.302 9 C -0.058 4.058 10 C 0.030 3.970 11 H 0.096 0.904 12 C -0.205 4.205 13 C -0.077 4.077 14 N -0.312 5.312 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.092 0.908 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.191 1.191 26 H -0.200 1.200 27 C -0.061 4.061 28 O -0.082 6.082 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -25.392 -1.410 -4.547 25.835 hybrid contribution 1.753 0.976 -0.339 2.035 sum -23.639 -0.434 -4.886 24.143 Atomic orbital electron populations 1.21761 0.91659 1.04332 1.02406 1.20417 0.97795 0.81603 1.06810 1.27416 0.97954 0.97992 0.77939 1.70918 1.16884 1.02422 1.29803 1.21770 1.10938 0.94690 0.93686 1.17037 0.77530 0.84578 0.82626 1.90751 1.47091 1.32308 1.75910 1.47457 1.62343 1.15682 1.04686 1.22103 0.99438 0.84161 1.00069 1.21289 0.96027 0.88312 0.91379 0.90386 1.22026 0.95240 1.02900 1.00352 1.22464 0.90080 0.99714 0.95449 1.60012 1.07314 1.47073 1.16796 1.21518 0.89913 1.00909 0.94042 1.20946 0.85179 0.83132 0.88408 1.90509 1.82906 1.61515 1.16331 1.41909 1.13778 1.55797 1.09445 1.19627 0.94472 1.39866 0.92506 0.90772 1.26034 1.01085 0.97251 0.96773 1.69667 1.31378 1.47452 1.07511 0.84939 0.77322 0.78295 0.77835 1.19567 1.19144 1.19987 1.25633 0.97818 0.87178 0.95445 1.84396 1.63355 1.22329 1.38157 0.92334 0.88598 0.92576 0.86826 0.86708 0.94450 0.89347 0.88389 0.90448 0.89308 0.92320 0.92238 0.89184 0.84673 0.91495 0.87639 0.76898 0.91191 0.73568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 71.98 0.71 -0.53 16 2 C -0.03 -0.34 6.56 29.85 0.20 -0.14 16 3 C 0.20 4.19 7.56 88.39 0.67 4.86 16 4 N -0.47 -12.46 7.86 -293.04 -2.30 -14.77 16 5 C -0.09 -2.75 6.66 40.41 0.27 -2.48 16 6 C 0.59 19.91 7.67 86.66 0.66 20.58 16 7 O -0.58 -22.51 16.23 -4.07 -0.07 -22.58 16 8 N -0.57 -15.98 2.48 -826.47 -2.05 -18.03 16 9 C 0.08 2.00 8.73 127.77 1.12 3.11 16 10 C 0.13 3.21 2.87 44.99 0.13 3.33 16 11 H 0.08 2.25 6.90 -2.39 -0.02 2.23 16 12 C -0.15 -2.29 9.18 71.98 0.66 -1.63 16 13 C 0.05 1.27 4.98 86.30 0.43 1.70 16 14 N -0.68 -23.90 5.85 -517.93 -3.03 -26.93 16 15 C 0.07 2.49 6.17 85.55 0.53 3.02 16 16 C 0.44 22.09 7.82 87.66 0.69 22.77 16 17 O -0.63 -37.55 15.78 -3.07 -0.05 -37.59 16 18 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 19 C -0.34 -19.80 9.68 84.04 0.81 -18.99 16 20 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 23 Si 0.99 44.13 29.55 68.60 2.03 46.15 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.01 0.33 11.95 67.32 0.80 1.13 16 28 O -0.20 -4.41 10.73 0.38 0.00 -4.41 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.51 6.44 -2.39 -0.02 1.50 16 36 H 0.10 2.31 5.30 -2.39 -0.01 2.29 16 37 H 0.08 0.98 6.67 -2.39 -0.02 0.97 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.91 7.84 -2.39 -0.02 1.89 16 42 H 0.34 13.48 8.43 -89.70 -0.76 12.72 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 46 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.25 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -80.73 395.94 0.86 -79.87 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.48 Total: 44.23 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 8.14 Total: 36.57 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -8.73 Total: -142.25 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -0.11 Total: -64.58 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -80.73 0.86 -79.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715333866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.072 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds