Wall clock time and date at job start Tue Mar 31 2020 20:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46821 * 2 1 4 4 N 1.29937 * 125.37930 * 90.00494 * 3 2 1 5 5 C 1.36065 * 108.47494 * 179.97438 * 4 3 2 6 6 C 1.47426 * 126.44580 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00035 * 186.17679 * 6 5 4 8 8 N 1.34770 * 120.00189 * 6.17909 * 6 5 4 9 9 C 1.46501 * 119.99826 * 356.10946 * 8 6 5 10 10 C 1.46495 * 120.00514 * 176.10777 * 8 6 5 11 11 H 1.08999 * 109.46847 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.47631 * 240.00262 * 10 8 6 13 13 C 1.52998 * 109.47179 * 119.99772 * 10 8 6 14 14 N 1.46895 * 109.47260 * 305.00481 * 13 10 8 15 15 C 1.46906 * 111.00064 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.46848 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00601 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99482 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99939 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99703 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00279 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99591 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99915 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47415 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47072 * 120.00172 * 23 21 19 26 26 H 1.48497 * 109.47352 * 239.99662 * 23 21 19 27 27 C 1.36091 * 107.10773 * 0.25997 * 5 4 3 28 28 O 1.34054 * 125.37906 * 269.95395 * 3 2 1 29 29 H 1.08995 * 109.46679 * 299.99940 * 1 2 3 30 30 H 1.08993 * 109.46828 * 60.00058 * 1 2 3 31 31 H 1.08997 * 109.46861 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46948 * 240.00107 * 2 1 3 33 33 H 1.09002 * 109.46961 * 119.99822 * 2 1 3 34 34 H 1.09004 * 109.47233 * 275.68459 * 9 8 6 35 35 H 1.08995 * 109.47334 * 35.68475 * 9 8 6 36 36 H 1.08997 * 109.47296 * 155.68341 * 9 8 6 37 37 H 1.08999 * 109.46809 * 299.99784 * 12 10 8 38 38 H 1.09000 * 109.47173 * 59.99514 * 12 10 8 39 39 H 1.09001 * 109.47347 * 179.97438 * 12 10 8 40 40 H 1.09008 * 109.46999 * 185.00300 * 13 10 8 41 41 H 1.08998 * 109.47415 * 65.00740 * 13 10 8 42 42 H 1.00901 * 111.00017 * 303.94940 * 14 13 10 43 43 H 1.08995 * 109.46826 * 299.99461 * 15 14 13 44 44 H 1.08997 * 109.47403 * 60.00084 * 15 14 13 45 45 H 0.96995 * 120.00566 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99255 * 179.97438 * 22 21 19 47 47 H 1.07994 * 126.52834 * 179.73424 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1301 1.0594 5 6 2.7176 3.3573 0.6638 6 6 3.1115 4.4726 1.5438 7 8 3.3761 5.5595 1.0666 8 7 3.1785 4.2877 2.8771 9 6 2.7781 3.0045 3.4596 10 6 3.6517 5.3697 3.7439 11 1 3.9014 6.2394 3.1360 12 6 4.8946 4.9061 4.5062 13 6 2.5521 5.7431 4.7400 14 7 1.3212 6.0735 4.0095 15 6 0.2411 6.4385 4.9360 16 6 -1.0026 6.7695 4.1519 17 8 -0.9904 6.7079 2.9407 18 7 -2.1286 7.1339 4.7968 19 6 -3.2599 7.4355 4.0837 20 1 -3.2490 7.3807 3.0051 21 6 -4.4210 7.8108 4.7485 22 7 -4.4343 7.8770 6.0609 23 14 -5.9626 8.2210 3.7767 24 1 -5.6877 8.0701 2.3253 25 1 -7.0569 7.2978 4.1714 26 1 -6.3693 9.6206 4.0612 27 6 2.7138 3.3638 -0.6971 28 8 2.2918 2.1523 -1.0930 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6981 2.9935 3.6069 35 1 3.0612 2.1956 2.7862 36 1 3.2770 2.8697 4.4193 37 1 4.6445 4.0366 5.1142 38 1 5.6779 4.6401 3.7966 39 1 5.2469 5.7114 5.1508 40 1 2.8700 6.6060 5.3255 41 1 2.3643 4.9013 5.4064 42 1 1.4854 6.8089 3.3384 43 1 0.0371 5.6017 5.6038 44 1 0.5431 7.3063 5.5224 45 1 -2.1386 7.1828 5.7655 46 1 -5.2448 8.1393 6.5249 47 1 2.9989 4.1859 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715333867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:12 Heat of formation + Delta-G solvation = -38.276260 kcal Electronic energy + Delta-G solvation = -29646.960721 eV Core-core repulsion = 25446.109814 eV Total energy + Delta-G solvation = -4200.850907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54710 -39.80043 -38.20917 -36.74133 -35.29721 -34.53724 -34.12563 -33.67375 -31.52777 -31.12277 -29.56273 -27.53985 -26.75483 -25.10594 -24.65644 -24.34660 -23.07704 -21.72202 -20.79012 -19.46071 -19.03201 -17.84178 -17.73267 -16.96361 -16.85936 -16.39251 -15.81177 -15.31509 -15.16646 -14.90522 -14.71244 -14.49491 -14.27751 -13.92532 -13.71811 -13.60232 -13.48206 -13.18411 -12.98191 -12.75526 -12.58279 -12.39377 -12.24671 -12.06241 -11.90412 -11.66771 -11.51618 -11.44472 -11.41585 -11.26603 -11.02225 -10.85330 -10.46781 -10.31494 -10.18514 -9.94120 -9.47625 -9.12617 -8.50877 -8.32830 -7.96375 -7.89934 -6.37843 -3.78154 1.05778 1.93326 2.44043 2.98120 3.18898 3.28921 3.36854 3.38111 3.70033 3.96969 4.12827 4.33967 4.56821 4.59848 4.82003 4.87030 4.89386 5.03005 5.08536 5.15073 5.25689 5.29865 5.31828 5.41930 5.46475 5.49803 5.51089 5.60653 5.64236 5.65938 5.67448 5.84196 5.90384 5.92620 6.03239 6.05217 6.07579 6.27753 6.32348 6.68397 7.29816 7.32748 7.51845 7.59315 7.74861 8.11446 8.24594 8.66637 9.22758 9.59477 10.11827 10.80226 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.002995 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.348694 B = 9345.481484 C =11202.697851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.025 4.025 3 C 0.192 3.808 4 N -0.451 5.451 5 C -0.058 4.058 6 C 0.607 3.393 7 O -0.542 6.542 8 N -0.574 5.574 9 C 0.077 3.923 10 C 0.137 3.863 11 H 0.100 0.900 12 C -0.158 4.158 13 C 0.049 3.951 14 N -0.662 5.662 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.579 6.579 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.008 3.992 28 O -0.197 6.197 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.351 0.649 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.971 -15.342 -5.326 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.063 4.063 3 C -0.017 4.017 4 N -0.182 5.182 5 C -0.178 4.178 6 C 0.394 3.606 7 O -0.420 6.420 8 N -0.305 5.305 9 C -0.066 4.066 10 C 0.033 3.967 11 H 0.118 0.882 12 C -0.217 4.217 13 C -0.081 4.081 14 N -0.295 5.295 15 C -0.081 4.081 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.066 4.066 28 O -0.083 6.083 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.170 0.830 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 17.674 -15.633 -5.702 24.275 hybrid contribution -0.642 1.491 0.029 1.624 sum 17.031 -14.143 -5.672 22.853 Atomic orbital electron populations 1.21809 0.92761 1.03044 1.03526 1.20101 0.97127 0.83948 1.05119 1.26507 0.99499 0.97100 0.78591 1.70947 1.15690 1.02745 1.28775 1.21749 1.09009 0.94151 0.92918 1.16662 0.76955 0.85303 0.81663 1.90794 1.51361 1.24699 1.75135 1.47275 1.63473 1.14704 1.05000 1.22134 1.00926 0.84778 0.98740 1.21139 0.92814 0.90987 0.91734 0.88187 1.22097 0.97038 1.02055 1.00478 1.22344 0.90211 1.00159 0.95418 1.60006 1.04672 1.48490 1.16331 1.21660 0.92050 0.99656 0.94705 1.19836 0.84785 0.84068 0.88547 1.90541 1.84501 1.57310 1.13955 1.41863 1.09434 1.59701 1.09332 1.19751 0.87613 1.41995 0.93264 0.87969 1.25247 0.99430 0.97599 0.95746 1.69626 1.29485 1.48594 1.06791 0.85811 0.80892 0.77901 0.79812 1.19253 1.20764 1.20779 1.25234 0.99182 0.86430 0.95756 1.84366 1.63522 1.22471 1.37980 0.91300 0.92041 0.90852 0.88933 0.87521 0.92035 0.88432 0.92336 0.91982 0.92107 0.91239 0.94465 0.90829 0.82990 0.89811 0.94043 0.77527 0.92004 0.75467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.73 16 2 C -0.02 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.08 7.56 -13.08 -0.10 1.98 16 4 N -0.45 -5.89 7.84 -7.65 -0.06 -5.95 16 5 C -0.06 -0.84 6.67 -83.02 -0.55 -1.39 16 6 C 0.61 9.76 7.67 -12.52 -0.10 9.66 16 7 O -0.54 -9.97 16.23 5.26 0.09 -9.88 16 8 N -0.57 -7.98 2.48 -175.21 -0.44 -8.42 16 9 C 0.08 0.93 8.77 59.85 0.52 1.46 16 10 C 0.14 1.70 2.87 -67.94 -0.20 1.51 16 11 H 0.10 1.41 6.90 -51.93 -0.36 1.05 16 12 C -0.16 -1.42 9.18 37.16 0.34 -1.08 16 13 C 0.05 0.64 4.98 -3.83 -0.02 0.62 16 14 N -0.66 -11.70 5.85 -115.06 -0.67 -12.37 16 15 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 16 C 0.44 10.98 7.82 -10.98 -0.09 10.90 16 17 O -0.58 -16.69 15.78 5.55 0.09 -16.61 16 18 N -0.57 -14.88 5.29 -10.96 -0.06 -14.94 16 19 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 20 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 23 Si 0.93 21.59 29.55 -169.99 -5.02 16.56 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.01 0.09 11.95 29.96 0.36 0.45 16 28 O -0.20 -2.24 10.73 6.50 0.07 -2.17 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.16 5.24 -51.93 -0.27 0.89 16 36 H 0.06 0.57 6.44 -51.93 -0.33 0.24 16 37 H 0.06 0.50 6.67 -51.93 -0.35 0.16 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 42 H 0.35 6.84 8.43 -39.29 -0.33 6.51 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.39 9.81 7.90 -40.82 -0.32 9.48 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.23 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -35.79 395.90 -6.18 -41.97 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.96 Total: 14.46 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 0.09 Total: 15.75 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.50 Total: -66.06 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: 0.24 Total: -28.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.79 -6.18 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715333867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.695 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds