Wall clock time and date at job start Tue Mar 31 2020 20:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.46821 * 2 1 4 4 N 1.29937 * 125.37930 * 90.00494 * 3 2 1 5 5 C 1.36065 * 108.47494 * 179.97438 * 4 3 2 6 6 C 1.47426 * 126.44580 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00035 * 186.17679 * 6 5 4 8 8 N 1.34770 * 120.00189 * 6.17909 * 6 5 4 9 9 C 1.46501 * 119.99826 * 356.10946 * 8 6 5 10 10 C 1.46495 * 120.00514 * 176.10777 * 8 6 5 11 11 H 1.08999 * 109.46847 * 0.02562 * 10 8 6 12 12 C 1.52996 * 109.47631 * 240.00262 * 10 8 6 13 13 C 1.52998 * 109.47179 * 119.99772 * 10 8 6 14 14 N 1.46895 * 109.47260 * 305.00481 * 13 10 8 15 15 C 1.46906 * 111.00064 * 180.02562 * 14 13 10 16 16 C 1.50703 * 109.46848 * 180.02562 * 15 14 13 17 17 O 1.21290 * 120.00601 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99482 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99939 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99703 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00279 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99591 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99915 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47415 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47072 * 120.00172 * 23 21 19 26 26 H 1.48497 * 109.47352 * 239.99662 * 23 21 19 27 27 C 1.36091 * 107.10773 * 0.25997 * 5 4 3 28 28 O 1.34054 * 125.37906 * 269.95395 * 3 2 1 29 29 H 1.08995 * 109.46679 * 299.99940 * 1 2 3 30 30 H 1.08993 * 109.46828 * 60.00058 * 1 2 3 31 31 H 1.08997 * 109.46861 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46948 * 240.00107 * 2 1 3 33 33 H 1.09002 * 109.46961 * 119.99822 * 2 1 3 34 34 H 1.09004 * 109.47233 * 275.68459 * 9 8 6 35 35 H 1.08995 * 109.47334 * 35.68475 * 9 8 6 36 36 H 1.08997 * 109.47296 * 155.68341 * 9 8 6 37 37 H 1.08999 * 109.46809 * 299.99784 * 12 10 8 38 38 H 1.09000 * 109.47173 * 59.99514 * 12 10 8 39 39 H 1.09001 * 109.47347 * 179.97438 * 12 10 8 40 40 H 1.09008 * 109.46999 * 185.00300 * 13 10 8 41 41 H 1.08998 * 109.47415 * 65.00740 * 13 10 8 42 42 H 1.00901 * 111.00017 * 303.94940 * 14 13 10 43 43 H 1.08995 * 109.46826 * 299.99461 * 15 14 13 44 44 H 1.08997 * 109.47403 * 60.00084 * 15 14 13 45 45 H 0.96995 * 120.00566 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99255 * 179.97438 * 22 21 19 47 47 H 1.07994 * 126.52834 * 179.73424 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2832 2.1301 1.0594 5 6 2.7176 3.3573 0.6638 6 6 3.1115 4.4726 1.5438 7 8 3.3761 5.5595 1.0666 8 7 3.1785 4.2877 2.8771 9 6 2.7781 3.0045 3.4596 10 6 3.6517 5.3697 3.7439 11 1 3.9014 6.2394 3.1360 12 6 4.8946 4.9061 4.5062 13 6 2.5521 5.7431 4.7400 14 7 1.3212 6.0735 4.0095 15 6 0.2411 6.4385 4.9360 16 6 -1.0026 6.7695 4.1519 17 8 -0.9904 6.7079 2.9407 18 7 -2.1286 7.1339 4.7968 19 6 -3.2599 7.4355 4.0837 20 1 -3.2490 7.3807 3.0051 21 6 -4.4210 7.8108 4.7485 22 7 -4.4343 7.8770 6.0609 23 14 -5.9626 8.2210 3.7767 24 1 -5.6877 8.0701 2.3253 25 1 -7.0569 7.2978 4.1714 26 1 -6.3693 9.6206 4.0612 27 6 2.7138 3.3638 -0.6971 28 8 2.2918 2.1523 -1.0930 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6981 2.9935 3.6069 35 1 3.0612 2.1956 2.7862 36 1 3.2770 2.8697 4.4193 37 1 4.6445 4.0366 5.1142 38 1 5.6779 4.6401 3.7966 39 1 5.2469 5.7114 5.1508 40 1 2.8700 6.6060 5.3255 41 1 2.3643 4.9013 5.4064 42 1 1.4854 6.8089 3.3384 43 1 0.0371 5.6017 5.6038 44 1 0.5431 7.3063 5.5224 45 1 -2.1386 7.1828 5.7655 46 1 -5.2448 8.1393 6.5249 47 1 2.9989 4.1859 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715333867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:11 Heat of formation + Delta-G solvation = -66.717406 kcal Electronic energy + Delta-G solvation = -29648.194022 eV Core-core repulsion = 25446.109814 eV Total energy + Delta-G solvation = -4202.084207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.46917 -40.94113 -40.14378 -37.97518 -36.34649 -36.05613 -35.46956 -34.83509 -33.30855 -32.50539 -30.44723 -28.99395 -27.79609 -26.73157 -25.68653 -25.20912 -24.48028 -22.64678 -21.72237 -21.12098 -20.33684 -19.90888 -18.77336 -18.02325 -17.87073 -17.79994 -17.20661 -16.73107 -16.45871 -16.32393 -15.94630 -15.70941 -15.47354 -15.20199 -15.14051 -14.91198 -14.52146 -14.42534 -14.12113 -13.89576 -13.60378 -13.54962 -13.34849 -13.31830 -13.10767 -12.89360 -12.79352 -12.63805 -12.59016 -12.43724 -12.27239 -12.14384 -12.03966 -11.82979 -11.54967 -11.50367 -11.04840 -10.40290 -10.10622 -10.04547 -9.54237 -9.30374 -8.49808 -5.98678 0.07518 0.97643 1.33810 1.38762 1.53364 1.58041 1.96248 2.01985 2.25368 2.27121 2.83337 2.90914 3.17004 3.46765 3.59655 3.78791 3.86136 4.14075 4.22274 4.25617 4.29847 4.31956 4.36323 4.37260 4.47475 4.52427 4.57638 4.59949 4.64777 4.70270 4.81375 4.86071 4.97096 4.99298 5.04025 5.09313 5.23560 5.31674 5.37264 5.37643 5.66809 5.86572 6.09030 6.29504 6.29924 6.50895 6.57499 7.09481 7.09833 7.52638 8.09244 8.67921 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.002995 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.348694 B = 9345.481484 C =11202.697851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C 0.195 3.805 4 N -0.470 5.470 5 C -0.092 4.092 6 C 0.594 3.406 7 O -0.579 6.579 8 N -0.572 5.572 9 C 0.083 3.917 10 C 0.133 3.867 11 H 0.078 0.922 12 C -0.147 4.147 13 C 0.052 3.948 14 N -0.680 5.680 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.074 0.926 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.277 1.277 25 H -0.268 1.268 26 H -0.268 1.268 27 C 0.013 3.987 28 O -0.196 6.196 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.036 0.964 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.336 0.664 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.279 0.721 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.373 -16.791 -4.176 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 C -0.014 4.014 4 N -0.200 5.200 5 C -0.211 4.211 6 C 0.382 3.618 7 O -0.461 6.461 8 N -0.302 5.302 9 C -0.059 4.059 10 C 0.030 3.970 11 H 0.096 0.904 12 C -0.205 4.205 13 C -0.077 4.077 14 N -0.312 5.312 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.092 0.908 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.201 1.201 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.061 4.061 28 O -0.082 6.082 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 18.091 -17.106 -4.468 25.296 hybrid contribution -0.771 1.894 -0.326 2.071 sum 17.320 -15.212 -4.795 23.545 Atomic orbital electron populations 1.21799 0.93116 1.04239 1.01785 1.20401 0.96562 0.81626 1.07413 1.27454 0.97830 0.98142 0.77928 1.70904 1.16782 1.02536 1.29790 1.21772 1.11002 0.94643 0.93682 1.17044 0.76760 0.85350 0.82632 1.90752 1.53318 1.26087 1.75914 1.47452 1.62550 1.15533 1.04628 1.22129 0.99525 0.84127 1.00143 1.21285 0.94112 0.90203 0.91406 0.90400 1.22024 0.94932 1.03243 1.00310 1.22465 0.88317 1.01503 0.95430 1.60017 1.06476 1.47920 1.16760 1.21520 0.89385 1.01436 0.94061 1.20944 0.86043 0.82224 0.88444 1.90509 1.85495 1.58896 1.16378 1.41910 1.09513 1.60045 1.09446 1.19668 0.89576 1.44777 0.92466 0.90797 1.26031 1.01726 0.96534 0.96812 1.69675 1.30656 1.47968 1.07656 0.84882 0.77225 0.78431 0.77841 1.20141 1.19279 1.19335 1.25628 0.97971 0.87007 0.95449 1.84397 1.63432 1.22222 1.38168 0.93815 0.92969 0.88184 0.86015 0.85780 0.94549 0.88167 0.89347 0.90445 0.92301 0.89318 0.92244 0.89200 0.84680 0.87652 0.91487 0.76901 0.91199 0.73601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.90 71.98 0.71 -1.29 16 2 C -0.02 -0.26 6.56 29.85 0.20 -0.06 16 3 C 0.20 4.13 7.56 88.39 0.67 4.80 16 4 N -0.47 -12.38 7.84 -293.03 -2.30 -14.68 16 5 C -0.09 -2.75 6.67 40.41 0.27 -2.48 16 6 C 0.59 19.92 7.67 86.66 0.66 20.58 16 7 O -0.58 -22.55 16.23 -4.08 -0.07 -22.62 16 8 N -0.57 -15.99 2.48 -826.50 -2.05 -18.04 16 9 C 0.08 1.96 8.77 127.77 1.12 3.08 16 10 C 0.13 3.21 2.87 44.99 0.13 3.34 16 11 H 0.08 2.24 6.90 -2.39 -0.02 2.23 16 12 C -0.15 -2.29 9.18 71.98 0.66 -1.63 16 13 C 0.05 1.27 4.98 86.30 0.43 1.70 16 14 N -0.68 -23.94 5.85 -517.93 -3.03 -26.97 16 15 C 0.07 2.49 6.17 85.56 0.53 3.02 16 16 C 0.44 22.12 7.82 87.66 0.69 22.80 16 17 O -0.63 -37.63 15.78 -3.06 -0.05 -37.67 16 18 N -0.57 -30.63 5.29 -306.98 -1.62 -32.26 16 19 C -0.34 -19.84 9.68 84.04 0.81 -19.02 16 20 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 22 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 23 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 C 0.01 0.33 11.95 67.32 0.80 1.14 16 28 O -0.20 -4.38 10.73 0.34 0.00 -4.38 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.10 2.35 5.24 -2.39 -0.01 2.34 16 36 H 0.09 1.51 6.44 -2.39 -0.02 1.50 16 37 H 0.08 0.98 6.67 -2.39 -0.02 0.97 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.09 1.92 7.84 -2.39 -0.02 1.90 16 42 H 0.34 13.50 8.43 -89.69 -0.76 12.75 16 43 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 46 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 47 H 0.25 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -81.10 395.90 0.87 -80.23 By element: Atomic # 1 Polarization: 45.02 SS G_CDS: -0.48 Total: 44.54 kcal Atomic # 6 Polarization: 27.69 SS G_CDS: 8.15 Total: 35.84 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -8.72 Total: -142.11 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -0.11 Total: -64.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -81.10 0.87 -80.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715333867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.517 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds