Wall clock time and date at job start Tue Mar 31 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47187 * 2 1 4 4 N 1.33694 * 126.27158 * 270.34883 * 3 2 1 5 5 C 1.30615 * 108.99786 * 180.13231 * 4 3 2 6 6 O 1.33667 * 109.14901 * 359.56653 * 5 4 3 7 7 C 1.35335 * 107.68634 * 0.26364 * 6 5 4 8 8 C 1.46726 * 126.64219 * 179.97438 * 7 6 5 9 9 O 1.21691 * 119.99914 * 179.97438 * 8 7 6 10 10 N 1.34775 * 120.00392 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00212 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47231 * 322.99364 * 11 10 8 13 13 C 1.53003 * 109.46997 * 82.99320 * 11 10 8 14 14 C 1.52998 * 109.47469 * 202.98946 * 11 10 8 15 15 N 1.46911 * 109.46688 * 55.16610 * 14 11 10 16 16 C 1.46902 * 110.99740 * 198.92884 * 15 14 11 17 17 C 1.46898 * 110.99971 * 74.97582 * 15 14 11 18 18 C 1.50693 * 109.47144 * 189.99869 * 17 15 14 19 19 O 1.21297 * 120.00096 * 0.02562 * 18 17 15 20 20 N 1.34778 * 120.00144 * 180.02562 * 18 17 15 21 21 C 1.37090 * 120.00178 * 179.97438 * 20 18 17 22 22 H 1.08010 * 120.00328 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00151 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00073 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99987 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46889 * 60.00123 * 25 23 21 27 27 H 1.48500 * 109.46844 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47042 * 300.00090 * 25 23 21 29 29 H 1.09000 * 109.47408 * 60.00274 * 1 2 3 30 30 H 1.08994 * 109.47349 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47254 * 300.00371 * 1 2 3 32 32 H 1.09000 * 109.47393 * 240.00150 * 2 1 3 33 33 H 1.09000 * 109.47408 * 119.99726 * 2 1 3 34 34 H 1.07996 * 125.42955 * 179.83124 * 5 4 3 35 35 H 0.97004 * 119.99637 * 0.02562 * 10 8 7 36 36 H 1.08999 * 109.47094 * 59.99960 * 13 11 10 37 37 H 1.08997 * 109.47100 * 180.02562 * 13 11 10 38 38 H 1.09006 * 109.46757 * 300.00190 * 13 11 10 39 39 H 1.08994 * 109.47469 * 175.16445 * 14 11 10 40 40 H 1.09000 * 109.47159 * 295.17478 * 14 11 10 41 41 H 1.09001 * 109.47213 * 54.12324 * 16 15 14 42 42 H 1.09000 * 109.47082 * 174.11984 * 16 15 14 43 43 H 1.09002 * 109.47295 * 294.12070 * 16 15 14 44 44 H 1.08995 * 109.47039 * 310.00003 * 17 15 14 45 45 H 1.08996 * 109.47106 * 69.99826 * 17 15 14 46 46 H 0.96999 * 120.00071 * 0.02562 * 20 18 17 47 47 H 0.96995 * 120.00414 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2898 2.1687 -1.0779 5 6 2.7105 3.3429 -0.6900 6 8 2.7255 3.3840 0.6459 7 6 2.3012 2.1814 1.0991 8 6 2.1587 1.7747 2.5016 9 8 1.7635 0.6564 2.7737 10 7 2.4656 2.6396 3.4886 11 6 2.3228 2.2337 4.8890 12 1 1.4424 1.6000 4.9956 13 6 3.5666 1.4560 5.3239 14 6 2.1659 3.4768 5.7669 15 7 1.0404 4.2837 5.2765 16 6 1.1240 5.6626 5.7763 17 6 -0.2443 3.6698 5.6378 18 6 -1.3609 4.3805 4.9174 19 8 -1.1110 5.3071 4.1755 20 7 -2.6372 3.9867 5.0973 21 6 -3.6531 4.6336 4.4424 22 1 -3.4306 5.4586 3.7818 23 6 -4.9689 4.2272 4.6275 24 7 -5.2396 3.2230 5.4308 25 14 -6.3530 5.1083 3.7345 26 1 -6.1460 4.9967 2.2682 27 1 -7.6518 4.4880 4.1002 28 1 -6.3616 6.5408 4.1256 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9962 4.1531 -1.3444 35 1 2.7803 3.5312 3.2717 36 1 4.4470 2.0897 5.2172 37 1 3.4602 1.1536 6.3656 38 1 3.6784 0.5703 4.6983 39 1 1.9739 3.1731 6.7960 40 1 3.0810 4.0677 5.7271 41 1 2.0982 6.0818 5.5247 42 1 0.3399 6.2639 5.3163 43 1 0.9959 5.6651 6.8588 44 1 -0.2380 2.6183 5.3507 45 1 -0.3962 3.7516 6.7140 46 1 -2.8371 3.2459 5.6909 47 1 -6.1580 2.9391 5.5598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716496539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:35 Heat of formation + Delta-G solvation = -45.691951 kcal Electronic energy + Delta-G solvation = -30277.197633 eV Core-core repulsion = 26076.025158 eV Total energy + Delta-G solvation = -4201.172475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49840 -39.78163 -38.59067 -36.99789 -35.79391 -34.69996 -33.76602 -32.97251 -31.40612 -31.23332 -29.38404 -28.06889 -26.99897 -24.83340 -24.65218 -23.66903 -22.62028 -21.66670 -20.65740 -20.48785 -19.12814 -18.28799 -17.84354 -16.92372 -16.63219 -16.30604 -16.17287 -15.32113 -14.98949 -14.83156 -14.66805 -14.46958 -14.16945 -13.96539 -13.91385 -13.62309 -13.45270 -13.37411 -12.92562 -12.69683 -12.53180 -12.17805 -12.08288 -11.87674 -11.50628 -11.48459 -11.44822 -11.25631 -11.17004 -11.04011 -11.02650 -10.91331 -10.68075 -10.43265 -10.20473 -10.05607 -9.45935 -9.22122 -8.87444 -8.47388 -7.98635 -7.88538 -6.40298 -3.81115 0.79363 2.35890 2.41753 3.09042 3.20550 3.21290 3.26335 3.30532 3.90084 3.92723 3.96312 4.22974 4.61165 4.64885 4.73570 5.02268 5.09672 5.17224 5.26898 5.27809 5.36298 5.36756 5.42615 5.48690 5.50898 5.55682 5.62753 5.70251 5.72064 5.86928 5.91905 5.96604 5.98210 6.05438 6.07891 6.21631 6.27850 6.35837 6.44327 6.51601 7.19391 7.29975 7.34278 7.55928 7.57989 8.06893 8.10006 8.62901 9.19187 9.55566 10.07345 10.77391 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.003700 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.722148 B = 7564.825322 C = 9185.624995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.079 3.921 4 N -0.493 5.493 5 C 0.198 3.802 6 O -0.188 6.188 7 C -0.105 4.105 8 C 0.611 3.389 9 O -0.518 6.518 10 N -0.691 5.691 11 C 0.146 3.854 12 H 0.091 0.909 13 C -0.162 4.162 14 C 0.042 3.958 15 N -0.517 5.517 16 C 0.023 3.977 17 C 0.044 3.956 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.255 0.745 35 H 0.408 0.592 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.015 0.985 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.875 -3.398 -3.116 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.045 4.045 4 N -0.222 5.222 5 C -0.027 4.027 6 O -0.073 6.073 7 C -0.161 4.161 8 C 0.396 3.604 9 O -0.396 6.396 10 N -0.341 5.341 11 C 0.042 3.958 12 H 0.109 0.891 13 C -0.221 4.221 14 C -0.087 4.087 15 N -0.241 5.241 16 C -0.124 4.124 17 C -0.087 4.087 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.119 0.881 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.270 0.730 35 H 0.243 0.757 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.034 0.966 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.538 -3.736 -4.426 19.422 hybrid contribution -0.724 0.821 1.258 1.668 sum 17.814 -2.915 -3.168 18.327 Atomic orbital electron populations 1.21650 0.93537 1.02280 1.02483 1.20145 0.96854 0.87683 1.04031 1.22052 0.97800 0.98311 0.86366 1.70317 1.16974 1.03390 1.31529 1.28282 0.97381 0.97550 0.79516 1.84501 1.64553 1.33921 1.24360 1.22959 1.11793 0.84902 0.96409 1.16260 0.77842 0.84944 0.81369 1.90848 1.47065 1.19861 1.81838 1.45646 1.66217 1.16739 1.05451 1.21046 0.99168 0.95795 0.79840 0.89136 1.22159 0.97321 1.00705 1.01884 1.22498 0.95278 0.94453 0.96463 1.61563 1.00558 1.02282 1.59650 1.22550 1.03308 0.89755 0.96832 1.21929 0.89660 0.99276 0.97870 1.19687 0.83425 0.87225 0.86681 1.90471 1.83119 1.31576 1.41127 1.41851 1.04583 1.31799 1.41729 1.19624 0.84960 1.14522 1.23757 0.88054 1.25247 0.98579 0.96692 0.97312 1.69599 1.21016 1.26752 1.36882 0.85941 0.79476 0.79252 0.79686 1.19901 1.20941 1.19940 0.92722 0.91723 0.91970 0.90345 0.88296 0.72957 0.75683 0.92394 0.91377 0.91659 0.93010 0.90213 0.92339 0.88416 0.96625 0.89542 0.93389 0.77529 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 37.16 0.37 -1.53 16 2 C -0.05 -0.64 5.93 -27.88 -0.17 -0.80 16 3 C 0.08 1.12 6.41 -82.47 -0.53 0.60 16 4 N -0.49 -6.58 11.26 -10.89 -0.12 -6.70 16 5 C 0.20 2.07 13.21 52.24 0.69 2.76 16 6 O -0.19 -2.37 10.57 4.44 0.05 -2.33 16 7 C -0.11 -1.53 7.18 -36.84 -0.26 -1.79 16 8 C 0.61 9.15 7.73 -12.83 -0.10 9.05 16 9 O -0.52 -8.65 14.47 5.20 0.08 -8.57 16 10 N -0.69 -8.93 4.82 -55.10 -0.27 -9.20 16 11 C 0.15 1.71 2.55 -67.93 -0.17 1.54 16 12 H 0.09 1.25 6.41 -51.93 -0.33 0.92 16 13 C -0.16 -1.50 9.46 37.16 0.35 -1.15 16 14 C 0.04 0.47 4.54 -3.82 -0.02 0.45 16 15 N -0.52 -7.94 4.16 -244.37 -1.02 -8.96 16 16 C 0.02 0.35 9.17 60.07 0.55 0.90 16 17 C 0.04 0.78 5.28 -4.98 -0.03 0.75 16 18 C 0.44 10.48 7.52 -10.99 -0.08 10.39 16 19 O -0.58 -15.36 13.88 5.54 0.08 -15.28 16 20 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.31 6.47 -51.93 -0.34 0.97 16 34 H 0.25 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.41 4.96 8.38 -40.82 -0.34 4.62 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.05 0.53 8.01 -51.93 -0.42 0.11 16 40 H 0.08 0.75 7.81 -51.93 -0.41 0.34 16 41 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 42 H 0.10 1.84 5.92 -51.93 -0.31 1.54 16 43 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 44 H 0.09 1.48 6.66 -51.93 -0.35 1.13 16 45 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -33.94 394.66 -6.21 -40.15 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -6.95 Total: 14.03 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 0.36 Total: 13.17 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.74 Total: -63.37 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: 0.20 Total: -26.18 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.94 -6.21 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716496539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.544 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds