Wall clock time and date at job start Tue Mar 31 2020 20:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47256 * 2 1 4 4 N 1.33694 * 126.27803 * 270.04329 * 3 2 1 5 5 C 1.30609 * 109.00092 * 179.97438 * 4 3 2 6 6 O 1.33664 * 109.15465 * 359.73528 * 5 4 3 7 7 C 1.35345 * 107.68447 * 0.42775 * 6 5 4 8 8 C 1.46718 * 126.64751 * 179.83698 * 7 6 5 9 9 O 1.21689 * 120.00258 * 179.69110 * 8 7 6 10 10 N 1.34781 * 120.00031 * 359.69246 * 8 7 6 11 11 C 1.46501 * 119.99856 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47248 * 34.61146 * 11 10 8 13 13 C 1.52996 * 109.47113 * 274.60454 * 11 10 8 14 14 C 1.53006 * 109.46379 * 154.60447 * 11 10 8 15 15 N 1.46896 * 109.47298 * 305.18400 * 14 11 10 16 16 C 1.46906 * 110.99599 * 163.93914 * 15 14 11 17 17 C 1.46899 * 111.00218 * 287.89093 * 15 14 11 18 18 C 1.50697 * 109.47096 * 170.00256 * 17 15 14 19 19 O 1.21291 * 120.00357 * 359.97438 * 18 17 15 20 20 N 1.34775 * 119.99866 * 180.02562 * 18 17 15 21 21 C 1.37102 * 120.00050 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99867 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99806 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00325 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46656 * 90.00008 * 25 23 21 27 27 H 1.48498 * 109.47400 * 210.00543 * 25 23 21 28 28 H 1.48503 * 109.46797 * 330.00915 * 25 23 21 29 29 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47128 * 299.99968 * 1 2 3 31 31 H 1.08997 * 109.47463 * 59.99676 * 1 2 3 32 32 H 1.09000 * 109.47377 * 240.00463 * 2 1 3 33 33 H 1.08997 * 109.47463 * 120.00324 * 2 1 3 34 34 H 1.07996 * 125.42452 * 179.97438 * 5 4 3 35 35 H 0.96994 * 119.99582 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.46749 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46941 * 300.00247 * 13 11 10 38 38 H 1.08996 * 109.47059 * 60.00115 * 13 11 10 39 39 H 1.09004 * 109.47052 * 65.19192 * 14 11 10 40 40 H 1.09000 * 109.46429 * 185.18128 * 14 11 10 41 41 H 1.09002 * 109.46890 * 54.89610 * 16 15 14 42 42 H 1.09006 * 109.46911 * 174.89579 * 16 15 14 43 43 H 1.08998 * 109.47294 * 294.89071 * 16 15 14 44 44 H 1.09003 * 109.47110 * 290.00608 * 17 15 14 45 45 H 1.09002 * 109.47108 * 50.00005 * 17 15 14 46 46 H 0.97000 * 120.00445 * 359.97438 * 20 18 17 47 47 H 0.97006 * 120.00055 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2953 2.1669 -1.0778 5 6 2.7108 3.3428 -0.6899 6 8 2.7205 3.3858 0.6460 7 6 2.3015 2.1813 1.0992 8 6 2.1588 1.7746 2.5017 9 8 1.7639 0.6562 2.7737 10 7 2.4649 2.6398 3.4887 11 6 2.3218 2.2338 4.8891 12 1 2.5671 1.1764 4.9878 13 6 0.8795 2.4674 5.3429 14 6 3.2706 3.0608 5.7591 15 7 4.6412 2.9341 5.2460 16 6 5.5082 3.9851 5.7954 17 6 5.1878 1.6000 5.5281 18 6 6.4851 1.4208 4.7825 19 8 6.9121 2.3160 4.0844 20 7 7.1702 0.2652 4.8905 21 6 8.3508 0.1023 4.2126 22 1 8.7314 0.8998 3.5917 23 6 9.0569 -1.0893 4.3236 24 7 10.1881 -1.2456 3.6735 25 14 8.3982 -2.4689 5.3970 26 1 7.5224 -3.3521 4.5857 27 1 9.5326 -3.2592 5.9390 28 1 7.6157 -1.8921 6.5196 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9969 4.1528 -1.3443 35 1 2.7800 3.5311 3.2719 36 1 0.7732 2.1658 6.3850 37 1 0.6344 3.5249 5.2443 38 1 0.2037 1.8784 4.7230 39 1 2.9681 4.1076 5.7330 40 1 3.2319 2.6970 6.7859 41 1 5.4618 3.9620 6.8842 42 1 6.5351 3.8151 5.4718 43 1 5.1710 4.9580 5.4379 44 1 5.3670 1.4997 6.5986 45 1 4.4757 0.8401 5.2062 46 1 6.8286 -0.4509 5.4485 47 1 10.6813 -2.0773 3.7512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716496540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:39 Heat of formation + Delta-G solvation = -38.302232 kcal Electronic energy + Delta-G solvation = -30301.134352 eV Core-core repulsion = 26100.282319 eV Total energy + Delta-G solvation = -4200.852033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.50766 -39.84930 -38.75345 -37.11639 -35.82800 -34.76830 -33.82739 -33.02760 -31.66979 -31.46232 -29.43463 -28.27987 -27.07278 -24.87784 -24.59521 -23.70699 -22.62873 -21.68274 -20.68196 -20.53292 -19.32693 -18.32828 -18.26165 -16.93989 -16.66730 -16.34717 -16.20354 -15.39922 -15.07865 -14.96111 -14.76872 -14.53007 -14.25044 -14.12145 -13.95997 -13.65090 -13.45015 -13.20230 -12.98340 -12.76931 -12.62115 -12.44905 -12.23583 -12.04869 -11.84632 -11.63034 -11.62084 -11.33168 -11.19752 -11.13764 -11.11403 -10.93578 -10.76248 -10.58293 -10.10287 -9.97145 -9.52981 -9.26682 -8.90156 -8.58329 -8.17610 -8.03718 -6.30499 -3.81756 0.77660 2.34793 2.40373 3.03265 3.05211 3.08849 3.16179 3.17269 3.73359 3.86561 3.93015 4.11367 4.51435 4.59868 4.69810 4.83029 4.97272 5.09623 5.21133 5.22083 5.27168 5.29451 5.34503 5.41618 5.44646 5.48567 5.52753 5.60265 5.63308 5.79421 5.83150 5.83805 5.89558 5.95283 5.99067 6.01151 6.09872 6.23855 6.37089 6.43384 7.08106 7.20430 7.30894 7.55278 7.58815 8.05260 8.14833 8.60646 8.95713 9.43141 9.83727 10.82598 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.003674 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.132029 B = 7619.102287 C = 8795.801495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C 0.081 3.919 4 N -0.493 5.493 5 C 0.200 3.800 6 O -0.188 6.188 7 C -0.107 4.107 8 C 0.612 3.388 9 O -0.519 6.519 10 N -0.692 5.692 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.162 4.162 14 C 0.043 3.957 15 N -0.516 5.516 16 C 0.023 3.977 17 C 0.040 3.960 18 C 0.453 3.547 19 O -0.559 6.559 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.408 0.592 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.015 0.985 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.996 8.526 0.781 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.043 4.043 4 N -0.222 5.222 5 C -0.025 4.025 6 O -0.073 6.073 7 C -0.162 4.162 8 C 0.397 3.603 9 O -0.397 6.397 10 N -0.341 5.341 11 C 0.040 3.960 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.086 4.086 15 N -0.240 5.240 16 C -0.124 4.124 17 C -0.092 4.092 18 C 0.239 3.761 19 O -0.441 6.441 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.705 3.295 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.271 0.729 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.835 8.158 -0.615 22.383 hybrid contribution 0.129 -0.478 2.086 2.144 sum -20.706 7.680 1.471 22.133 Atomic orbital electron populations 1.21618 0.93970 1.02135 1.01745 1.20162 0.96407 0.87890 1.04639 1.22025 0.97853 0.98091 0.86372 1.70319 1.17145 1.03231 1.31511 1.28290 0.97141 0.97622 0.79486 1.84499 1.64649 1.33809 1.24390 1.22923 1.11621 0.85295 0.96355 1.16253 0.77912 0.84711 0.81399 1.90843 1.47565 1.19433 1.81866 1.45638 1.65963 1.17149 1.05388 1.21060 0.94462 1.00554 0.79942 0.89067 1.22156 0.95941 1.02170 1.01772 1.22498 0.89229 1.00615 0.96268 1.61544 1.00809 1.02522 1.59146 1.22529 1.00291 0.93923 0.95686 1.21959 0.97081 0.91899 0.98243 1.19590 0.86238 0.83865 0.86401 1.90523 1.69936 1.41316 1.42367 1.42216 1.22265 1.14321 1.44192 1.19411 0.96170 1.02734 1.24971 0.86322 1.25024 0.95842 0.97559 0.97628 1.69622 1.14340 1.26647 1.41524 0.86693 0.79313 0.82847 0.80690 1.19509 1.20159 1.19549 0.91772 0.92523 0.92870 0.90051 0.88052 0.72913 0.75637 0.91389 0.92311 0.91693 0.90025 0.93078 0.96636 0.88600 0.91952 0.93275 0.89377 0.79761 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.89 37.16 0.37 -1.11 16 2 C -0.05 -0.68 5.93 -27.88 -0.17 -0.85 16 3 C 0.08 1.15 6.41 -82.46 -0.53 0.62 16 4 N -0.49 -6.60 11.26 -10.89 -0.12 -6.72 16 5 C 0.20 2.09 13.21 52.24 0.69 2.78 16 6 O -0.19 -2.35 10.57 4.42 0.05 -2.31 16 7 C -0.11 -1.53 7.18 -36.84 -0.26 -1.79 16 8 C 0.61 8.92 7.76 -12.83 -0.10 8.82 16 9 O -0.52 -8.41 14.45 5.20 0.08 -8.34 16 10 N -0.69 -8.56 4.79 -55.10 -0.26 -8.82 16 11 C 0.14 1.59 2.52 -67.93 -0.17 1.41 16 12 H 0.09 1.17 6.22 -51.93 -0.32 0.85 16 13 C -0.16 -1.38 9.49 37.16 0.35 -1.03 16 14 C 0.04 0.45 4.53 -3.82 -0.02 0.43 16 15 N -0.52 -7.57 4.17 -244.36 -1.02 -8.59 16 16 C 0.02 0.34 9.19 60.07 0.55 0.89 16 17 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 18 C 0.45 10.30 7.42 -10.99 -0.08 10.22 16 19 O -0.56 -14.71 13.96 5.55 0.08 -14.63 16 20 N -0.59 -14.26 5.09 -10.96 -0.06 -14.32 16 21 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 24 N -0.88 -25.99 13.96 55.50 0.77 -25.21 16 25 Si 0.88 19.71 27.74 -169.99 -4.71 15.00 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.43 6.47 -51.93 -0.34 1.10 16 34 H 0.26 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.41 4.75 8.40 -40.82 -0.34 4.41 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.72 7.99 -51.93 -0.42 0.30 16 40 H 0.05 0.48 8.05 -51.93 -0.42 0.06 16 41 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 42 H 0.10 1.76 5.79 -51.93 -0.30 1.46 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 45 H 0.09 1.39 6.50 -51.93 -0.34 1.05 16 46 H 0.37 7.94 5.76 -40.82 -0.24 7.71 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -35.35 391.53 -5.86 -41.20 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.91 Total: 13.56 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 0.36 Total: 13.28 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.69 Total: -63.67 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.20 Total: -25.28 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.35 -5.86 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716496540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.902 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds