Wall clock time and date at job start Tue Mar 31 2020 20:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47256 * 2 1 4 4 N 1.33694 * 126.27803 * 270.04329 * 3 2 1 5 5 C 1.30609 * 109.00092 * 179.97438 * 4 3 2 6 6 O 1.33664 * 109.15465 * 359.73528 * 5 4 3 7 7 C 1.35345 * 107.68447 * 0.42775 * 6 5 4 8 8 C 1.46718 * 126.64751 * 179.83698 * 7 6 5 9 9 O 1.21689 * 120.00258 * 179.69110 * 8 7 6 10 10 N 1.34781 * 120.00031 * 359.69246 * 8 7 6 11 11 C 1.46501 * 119.99856 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47248 * 34.61146 * 11 10 8 13 13 C 1.52996 * 109.47113 * 274.60454 * 11 10 8 14 14 C 1.53006 * 109.46379 * 154.60447 * 11 10 8 15 15 N 1.46896 * 109.47298 * 305.18400 * 14 11 10 16 16 C 1.46906 * 110.99599 * 163.93914 * 15 14 11 17 17 C 1.46899 * 111.00218 * 287.89093 * 15 14 11 18 18 C 1.50697 * 109.47096 * 170.00256 * 17 15 14 19 19 O 1.21291 * 120.00357 * 359.97438 * 18 17 15 20 20 N 1.34775 * 119.99866 * 180.02562 * 18 17 15 21 21 C 1.37102 * 120.00050 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99867 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99806 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 120.00325 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.46656 * 90.00008 * 25 23 21 27 27 H 1.48498 * 109.47400 * 210.00543 * 25 23 21 28 28 H 1.48503 * 109.46797 * 330.00915 * 25 23 21 29 29 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47128 * 299.99968 * 1 2 3 31 31 H 1.08997 * 109.47463 * 59.99676 * 1 2 3 32 32 H 1.09000 * 109.47377 * 240.00463 * 2 1 3 33 33 H 1.08997 * 109.47463 * 120.00324 * 2 1 3 34 34 H 1.07996 * 125.42452 * 179.97438 * 5 4 3 35 35 H 0.96994 * 119.99582 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.46749 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46941 * 300.00247 * 13 11 10 38 38 H 1.08996 * 109.47059 * 60.00115 * 13 11 10 39 39 H 1.09004 * 109.47052 * 65.19192 * 14 11 10 40 40 H 1.09000 * 109.46429 * 185.18128 * 14 11 10 41 41 H 1.09002 * 109.46890 * 54.89610 * 16 15 14 42 42 H 1.09006 * 109.46911 * 174.89579 * 16 15 14 43 43 H 1.08998 * 109.47294 * 294.89071 * 16 15 14 44 44 H 1.09003 * 109.47110 * 290.00608 * 17 15 14 45 45 H 1.09002 * 109.47108 * 50.00005 * 17 15 14 46 46 H 0.97000 * 120.00445 * 359.97438 * 20 18 17 47 47 H 0.97006 * 120.00055 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2953 2.1669 -1.0778 5 6 2.7108 3.3428 -0.6899 6 8 2.7205 3.3858 0.6460 7 6 2.3015 2.1813 1.0992 8 6 2.1588 1.7746 2.5017 9 8 1.7639 0.6562 2.7737 10 7 2.4649 2.6398 3.4887 11 6 2.3218 2.2338 4.8891 12 1 2.5671 1.1764 4.9878 13 6 0.8795 2.4674 5.3429 14 6 3.2706 3.0608 5.7591 15 7 4.6412 2.9341 5.2460 16 6 5.5082 3.9851 5.7954 17 6 5.1878 1.6000 5.5281 18 6 6.4851 1.4208 4.7825 19 8 6.9121 2.3160 4.0844 20 7 7.1702 0.2652 4.8905 21 6 8.3508 0.1023 4.2126 22 1 8.7314 0.8998 3.5917 23 6 9.0569 -1.0893 4.3236 24 7 10.1881 -1.2456 3.6735 25 14 8.3982 -2.4689 5.3970 26 1 7.5224 -3.3521 4.5857 27 1 9.5326 -3.2592 5.9390 28 1 7.6157 -1.8921 6.5196 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9969 4.1528 -1.3443 35 1 2.7800 3.5311 3.2719 36 1 0.7732 2.1658 6.3850 37 1 0.6344 3.5249 5.2443 38 1 0.2037 1.8784 4.7230 39 1 2.9681 4.1076 5.7330 40 1 3.2319 2.6970 6.7859 41 1 5.4618 3.9620 6.8842 42 1 6.5351 3.8151 5.4718 43 1 5.1710 4.9580 5.4379 44 1 5.3670 1.4997 6.5986 45 1 4.4757 0.8401 5.2062 46 1 6.8286 -0.4509 5.4485 47 1 10.6813 -2.0773 3.7512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716496540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:39 Heat of formation + Delta-G solvation = -69.205262 kcal Electronic energy + Delta-G solvation = -30302.474408 eV Core-core repulsion = 26100.282319 eV Total energy + Delta-G solvation = -4202.192089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.46934 -40.94644 -40.36006 -38.37562 -36.84572 -36.12700 -35.55220 -33.99197 -33.76692 -32.40165 -30.38298 -29.74305 -27.97901 -26.50296 -25.80479 -24.63253 -23.73034 -22.74111 -21.71685 -21.56640 -21.16718 -20.15780 -19.31756 -17.93448 -17.90455 -17.53331 -17.32101 -16.83329 -16.67806 -15.97487 -15.95055 -15.73515 -15.58274 -15.18829 -15.10757 -14.99548 -14.85235 -14.42675 -14.36302 -14.13327 -13.72969 -13.58556 -13.44954 -13.16565 -12.93043 -12.85926 -12.69125 -12.53081 -12.45999 -12.43150 -12.17748 -12.07729 -12.00120 -11.94517 -11.70838 -11.48006 -11.16217 -10.37509 -10.28315 -10.24170 -9.86847 -9.21238 -8.43303 -6.03441 -0.21690 1.26607 1.32959 1.39490 1.40668 1.46528 1.94331 2.00712 2.20230 2.22213 2.63924 3.09919 3.12636 3.20023 3.62096 3.71843 3.81078 4.03812 4.15984 4.26245 4.30928 4.31592 4.32551 4.39199 4.46581 4.48426 4.56710 4.64631 4.71339 4.75443 4.79012 4.83864 4.97846 5.04052 5.08208 5.19044 5.21414 5.29733 5.32700 5.46006 5.51461 5.87689 5.99523 6.18664 6.32310 6.57483 6.58077 6.86918 7.03257 7.38326 7.95419 8.74381 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.003674 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.132029 B = 7619.102287 C = 8795.801495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.055 4.055 3 C 0.069 3.931 4 N -0.523 5.523 5 C 0.220 3.780 6 O -0.192 6.192 7 C -0.134 4.134 8 C 0.605 3.395 9 O -0.544 6.544 10 N -0.685 5.685 11 C 0.141 3.859 12 H 0.072 0.928 13 C -0.152 4.152 14 C 0.049 3.951 15 N -0.537 5.537 16 C 0.029 3.971 17 C 0.053 3.947 18 C 0.452 3.548 19 O -0.601 6.601 20 N -0.595 5.595 21 C -0.326 4.326 22 H 0.056 0.944 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.261 1.261 27 H -0.272 1.272 28 H -0.232 1.232 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.306 0.694 35 H 0.412 0.588 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.387 0.613 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.687 8.756 3.019 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.055 4.055 4 N -0.252 5.252 5 C -0.004 4.004 6 O -0.078 6.078 7 C -0.189 4.189 8 C 0.390 3.610 9 O -0.425 6.425 10 N -0.334 5.334 11 C 0.037 3.963 12 H 0.090 0.910 13 C -0.210 4.210 14 C -0.078 4.078 15 N -0.261 5.261 16 C -0.118 4.118 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.485 6.485 20 N -0.237 5.237 21 C -0.455 4.455 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.780 3.220 26 H -0.186 1.186 27 H -0.197 1.197 28 H -0.155 1.155 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.321 0.679 35 H 0.247 0.753 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.222 0.778 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.555 8.422 1.650 25.070 hybrid contribution 1.006 -0.350 1.247 1.640 sum -22.549 8.071 2.897 24.125 Atomic orbital electron populations 1.21545 0.92365 1.03121 1.01454 1.20181 0.97802 0.87418 1.03865 1.22305 0.97657 0.98665 0.86847 1.70331 1.18858 1.04449 1.31536 1.29530 0.93962 0.97818 0.79137 1.84499 1.64818 1.33155 1.25356 1.22948 1.13272 0.86125 0.96530 1.16392 0.77921 0.84716 0.81924 1.90813 1.48962 1.20390 1.82331 1.45693 1.65034 1.16879 1.05798 1.21221 0.96277 0.99624 0.79187 0.90990 1.22068 0.93545 1.02904 1.02505 1.22584 0.86055 1.02186 0.96995 1.61458 1.02694 1.01354 1.60633 1.22392 0.97674 0.94699 0.97074 1.21824 0.93450 0.93774 0.98760 1.20874 0.87525 0.82415 0.85238 1.90510 1.71394 1.42621 1.43965 1.42079 1.21314 1.15648 1.44664 1.18983 0.98570 1.01977 1.25968 0.92592 1.26051 0.95651 1.00432 0.99021 1.69798 1.16204 1.27971 1.43504 0.85437 0.79158 0.78111 0.79307 1.18600 1.19662 1.15485 0.90156 0.93437 0.92367 0.89677 0.89809 0.67891 0.75252 0.89288 0.90790 0.93401 0.87544 0.90521 0.94236 0.93383 0.90041 0.90158 0.88022 0.77803 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.89 71.98 0.71 -2.01 16 2 C -0.05 -1.44 5.93 29.85 0.18 -1.27 16 3 C 0.07 1.99 6.41 41.83 0.27 2.26 16 4 N -0.52 -13.74 11.26 -303.13 -3.41 -17.16 16 5 C 0.22 4.29 13.21 130.42 1.72 6.01 16 6 O -0.19 -4.69 10.57 -7.09 -0.08 -4.77 16 7 C -0.13 -3.87 7.18 24.05 0.17 -3.70 16 8 C 0.60 17.77 7.76 86.46 0.67 18.44 16 9 O -0.54 -18.01 14.45 -4.31 -0.06 -18.07 16 10 N -0.68 -16.24 4.79 -446.46 -2.14 -18.38 16 11 C 0.14 2.75 2.52 44.99 0.11 2.87 16 12 H 0.07 1.71 6.22 -2.39 -0.01 1.70 16 13 C -0.15 -2.15 9.49 71.98 0.68 -1.46 16 14 C 0.05 0.84 4.53 86.31 0.39 1.23 16 15 N -0.54 -14.49 4.17 -927.02 -3.87 -18.36 16 16 C 0.03 0.79 9.19 127.69 1.17 1.96 16 17 C 0.05 1.65 5.30 85.56 0.45 2.11 16 18 C 0.45 20.70 7.42 87.66 0.65 21.35 16 19 O -0.60 -32.99 13.96 -3.06 -0.04 -33.03 16 20 N -0.60 -28.92 5.09 -306.99 -1.56 -30.49 16 21 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 22 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.93 -57.24 13.96 21.66 0.30 -56.94 16 25 Si 0.96 40.05 27.74 68.60 1.90 41.95 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.23 -8.16 6.52 99.48 0.65 -7.51 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.49 6.47 -2.39 -0.02 2.47 16 34 H 0.31 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.41 9.07 8.40 -92.71 -0.78 8.29 16 36 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.35 7.99 -2.39 -0.02 1.33 16 40 H 0.08 1.00 8.05 -2.39 -0.02 0.98 16 41 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 42 H 0.05 1.77 5.79 -2.38 -0.01 1.76 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 45 H 0.10 2.95 6.50 -2.39 -0.02 2.93 16 46 H 0.39 15.88 5.76 -92.71 -0.53 15.35 16 47 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -84.84 391.53 -0.81 -85.64 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.36 Total: 40.70 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 8.51 Total: 28.90 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -10.68 Total: -141.32 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.18 Total: -55.87 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.90 Total: 41.95 kcal Total: -84.84 -0.81 -85.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716496540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.438 kcal (2) G-P(sol) polarization free energy of solvation -84.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds