Wall clock time and date at job start Tue Mar 31 2020 20:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47101 * 2 1 4 4 N 1.29953 * 126.28863 * 90.01881 * 3 2 1 5 5 O 1.21296 * 110.25139 * 180.02562 * 4 3 2 6 6 C 1.33641 * 109.81211 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.54794 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47203 * 270.02076 * 7 6 5 9 9 C 1.42899 * 113.99877 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47136 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99952 * 180.02562 * 12 10 9 14 14 C 1.53004 * 110.91754 * 56.10249 * 13 12 10 15 15 C 1.55157 * 111.00488 * 180.02562 * 13 12 10 16 16 C 1.54330 * 102.94216 * 82.57591 * 15 13 12 17 17 N 1.47024 * 107.27024 * 22.18785 * 16 15 13 18 18 C 1.36934 * 125.64602 * 181.02080 * 17 16 15 19 19 H 1.07999 * 119.99808 * 185.23411 * 18 17 16 20 20 C 1.38812 * 120.00061 * 5.23969 * 18 17 16 21 21 N 1.31616 * 120.00266 * 352.94921 * 20 18 17 22 22 Si 1.86798 * 119.99789 * 172.94425 * 20 18 17 23 23 H 1.48497 * 109.47680 * 275.01041 * 22 20 18 24 24 H 1.48497 * 109.47264 * 35.01281 * 22 20 18 25 25 H 1.48501 * 109.46844 * 155.00924 * 22 20 18 26 26 C 1.47420 * 108.70353 * 1.29157 * 17 16 15 27 27 N 1.31124 * 106.89660 * 0.22082 * 6 5 4 28 28 H 1.09001 * 109.47447 * 299.99551 * 1 2 3 29 29 H 1.09000 * 109.47038 * 60.00215 * 1 2 3 30 30 H 1.09004 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47447 * 240.00449 * 2 1 3 32 32 H 1.09000 * 109.47038 * 119.99785 * 2 1 3 33 33 H 1.09001 * 109.46771 * 150.02263 * 7 6 5 34 34 H 1.08996 * 109.47306 * 30.03085 * 7 6 5 35 35 H 1.08999 * 109.46983 * 60.00656 * 9 8 7 36 36 H 1.09000 * 109.47601 * 300.00468 * 9 8 7 37 37 H 0.96997 * 120.00478 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47354 * 183.90427 * 14 13 12 39 39 H 1.09002 * 109.46729 * 303.90329 * 14 13 12 40 40 H 1.08998 * 109.46925 * 63.89825 * 14 13 12 41 41 H 1.08996 * 110.71929 * 324.21039 * 15 13 12 42 42 H 1.09003 * 110.72157 * 200.93068 * 15 13 12 43 43 H 1.09000 * 109.87816 * 262.77979 * 16 15 13 44 44 H 1.08997 * 110.01127 * 141.68502 * 16 15 13 45 45 H 0.96999 * 120.00588 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.36644 * 94.47668 * 26 17 16 47 47 H 1.08995 * 110.36947 * 216.80156 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2890 2.1458 1.0475 5 8 2.6770 3.2451 0.7124 6 6 2.7050 3.3285 -0.6211 7 6 3.1258 4.5238 -1.4369 8 8 1.9884 5.3500 -1.6930 9 6 2.2797 6.5171 -2.4645 10 6 1.0151 7.3097 -2.6734 11 8 -0.0324 6.9143 -2.2072 12 7 1.0484 8.4584 -3.3776 13 6 -0.1809 9.2292 -3.5802 14 6 -0.8330 9.5794 -2.2412 15 6 0.0953 10.5070 -4.4158 16 6 0.0742 9.9823 -5.8670 17 7 -0.6943 8.7288 -5.8668 18 6 -0.9300 7.9371 -6.9589 19 1 -1.5784 7.0777 -6.8729 20 6 -0.3353 8.2389 -8.1763 21 7 0.3412 9.3589 -8.3186 22 14 -0.4952 7.0554 -9.6127 23 1 0.5599 6.0150 -9.5168 24 1 -1.8319 6.4097 -9.5756 25 1 -0.3409 7.8009 -10.8877 26 6 -1.1746 8.4691 -4.4975 27 7 2.2913 2.1736 -1.0840 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5505 4.1869 -2.3826 34 1 3.8732 5.0948 -0.8861 35 1 2.6865 6.2212 -3.4315 36 1 3.0097 7.1297 -1.9353 37 1 1.8862 8.7748 -3.7502 38 1 -1.7787 10.0909 -2.4204 39 1 -1.0157 8.6654 -1.6760 40 1 -0.1692 10.2312 -1.6732 41 1 1.0720 10.9243 -4.1708 42 1 -0.6909 11.2461 -4.2616 43 1 1.0921 9.7928 -6.2075 44 1 -0.4055 10.7112 -6.5203 45 1 0.7565 9.5700 -9.1694 46 1 -2.1851 8.8573 -4.3698 47 1 -1.1477 7.4009 -4.2822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716850568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:38 Heat of formation + Delta-G solvation = 21.265131 kcal Electronic energy + Delta-G solvation = -29409.649071 eV Core-core repulsion = 25211.380073 eV Total energy + Delta-G solvation = -4198.268998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.85820 -39.96925 -38.36634 -37.01470 -36.61743 -34.13537 -33.92937 -32.12531 -31.88201 -30.25755 -28.94723 -28.58158 -26.76010 -25.65637 -25.38341 -23.65370 -23.46146 -21.46157 -21.07640 -20.16194 -19.09138 -18.45990 -17.95263 -17.30755 -16.92962 -16.55740 -16.47327 -15.63784 -15.37693 -15.01879 -14.62945 -14.53156 -14.43410 -13.86692 -13.70871 -13.37208 -13.21932 -13.04344 -12.76470 -12.46032 -12.33822 -12.04503 -11.96558 -11.94031 -11.76787 -11.69228 -11.66475 -11.56781 -11.24250 -10.90437 -10.87646 -10.39418 -10.36799 -10.27689 -10.15384 -10.08533 -10.01488 -9.68215 -9.23222 -8.68090 -8.52305 -6.80942 -5.72846 -3.03575 0.74436 1.86147 2.35452 2.86017 3.00338 3.31789 3.40576 3.46127 3.47654 3.70352 4.05218 4.48280 4.50864 4.59635 4.77614 4.81808 4.84302 4.88136 4.95229 5.05359 5.08587 5.18845 5.36527 5.42768 5.47364 5.48021 5.58078 5.61455 5.71416 5.72064 5.85308 6.01472 6.11992 6.15852 6.35262 6.39016 6.48061 6.56520 6.68539 6.80811 7.10811 7.52270 7.55858 7.79346 7.85450 7.87843 8.25314 8.53164 9.22744 9.82805 10.49108 11.39520 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.002587 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.353167 B =10822.069732 C =12188.028970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C 0.170 3.830 4 N -0.380 5.380 5 O 0.087 5.913 6 C 0.187 3.813 7 C 0.155 3.845 8 O -0.354 6.354 9 C 0.045 3.955 10 C 0.517 3.483 11 O -0.519 6.519 12 N -0.698 5.698 13 C 0.159 3.841 14 C -0.154 4.154 15 C -0.146 4.146 16 C 0.176 3.824 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.132 3.868 27 N -0.458 5.458 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.399 0.601 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.026 0.974 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -8.105 16.784 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 C -0.102 4.102 4 N -0.086 5.086 5 O 0.027 5.973 6 C -0.034 4.034 7 C 0.077 3.923 8 O -0.271 6.271 9 C -0.034 4.034 10 C 0.301 3.699 11 O -0.394 6.394 12 N -0.350 5.350 13 C 0.073 3.927 14 C -0.212 4.212 15 C -0.185 4.185 16 C 0.051 3.949 17 N -0.330 5.330 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.218 1.218 26 C 0.005 3.995 27 N -0.193 5.193 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.020 -9.018 17.455 21.221 hybrid contribution 0.683 -0.147 -1.269 1.448 sum 8.702 -9.166 16.186 20.536 Atomic orbital electron populations 1.21756 0.93065 1.02902 1.03056 1.19958 0.97045 0.85395 1.04681 1.25955 1.00407 1.00550 0.83321 1.74635 1.17233 0.92842 1.23907 1.85296 1.60256 1.27134 1.24612 1.28179 0.96840 0.96285 0.82088 1.20590 0.88777 0.85554 0.97406 1.88061 1.30438 1.35039 1.73558 1.22337 0.96918 0.87113 0.97065 1.19875 0.89837 0.81158 0.79000 1.90686 1.31616 1.68143 1.48995 1.45645 1.11827 1.23218 1.54355 1.21513 0.84855 0.91813 0.94520 1.22051 1.00133 1.02489 0.96566 1.23224 1.01074 0.95517 0.98646 1.21174 0.96965 0.87816 0.88966 1.44453 1.61514 1.24147 1.02846 1.19051 1.23402 1.05475 0.87153 0.90591 1.24770 1.00245 0.97688 0.97708 1.69951 1.39856 1.22962 1.24359 0.86176 0.77769 0.80229 0.81888 1.21610 1.20769 1.21776 1.21933 0.94017 0.98412 0.85148 1.71909 1.15833 1.02174 1.29416 0.92272 0.91655 0.90940 0.88445 0.89058 0.87925 0.88921 0.89279 0.89754 0.76658 0.91876 0.90320 0.93183 0.91682 0.90820 0.93464 0.93996 0.93843 0.95632 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.03 -0.27 6.56 -27.89 -0.18 -0.45 16 3 C 0.17 2.05 7.47 -156.37 -1.17 0.89 16 4 N -0.38 -4.89 12.16 30.90 0.38 -4.52 16 5 O 0.09 1.07 11.31 18.11 0.20 1.27 16 6 C 0.19 2.18 8.14 -13.06 -0.11 2.08 16 7 C 0.16 1.35 6.56 36.01 0.24 1.58 16 8 O -0.35 -4.56 9.86 -55.14 -0.54 -5.11 16 9 C 0.05 0.50 6.42 36.01 0.23 0.73 16 10 C 0.52 8.12 7.29 -10.99 -0.08 8.04 16 11 O -0.52 -10.29 13.33 -14.36 -0.19 -10.48 16 12 N -0.70 -10.60 5.19 -45.51 -0.24 -10.84 16 13 C 0.16 2.74 0.82 -129.55 -0.11 2.63 16 14 C -0.15 -2.34 8.59 37.16 0.32 -2.02 16 15 C -0.15 -2.48 5.97 -24.89 -0.15 -2.63 16 16 C 0.18 4.02 5.38 -3.06 -0.02 4.00 16 17 N -0.60 -15.20 3.39 -169.93 -0.58 -15.78 16 18 C -0.22 -6.23 10.26 -15.06 -0.15 -6.38 16 19 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -26.47 10.36 55.49 0.57 -25.89 16 22 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.13 2.87 6.18 -2.41 -0.01 2.85 16 27 N -0.46 -6.02 11.55 -9.87 -0.11 -6.13 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.40 5.10 8.51 -40.82 -0.35 4.75 16 38 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.34 5.92 -51.93 -0.31 1.03 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 42 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 43 H 0.05 1.17 7.30 -51.93 -0.38 0.79 16 44 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.03 0.56 7.99 -51.93 -0.41 0.15 16 47 H 0.05 1.20 6.88 -51.93 -0.36 0.85 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -35.94 389.00 -7.82 -43.76 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.23 Total: 0.61 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.92 Total: 10.13 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.02 Total: -63.16 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.53 Total: -14.32 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.94 -7.82 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716850568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.029 kcal (2) G-P(sol) polarization free energy of solvation -35.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds