Wall clock time and date at job start Tue Mar 31 2020 20:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47101 * 2 1 4 4 N 1.29953 * 126.28863 * 90.01881 * 3 2 1 5 5 O 1.21296 * 110.25139 * 180.02562 * 4 3 2 6 6 C 1.33641 * 109.81211 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.54794 * 179.97438 * 6 5 4 8 8 O 1.42897 * 109.47203 * 270.02076 * 7 6 5 9 9 C 1.42899 * 113.99877 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47136 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99969 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99952 * 180.02562 * 12 10 9 14 14 C 1.53004 * 110.91754 * 56.10249 * 13 12 10 15 15 C 1.55157 * 111.00488 * 180.02562 * 13 12 10 16 16 C 1.54330 * 102.94216 * 82.57591 * 15 13 12 17 17 N 1.47024 * 107.27024 * 22.18785 * 16 15 13 18 18 C 1.36934 * 125.64602 * 181.02080 * 17 16 15 19 19 H 1.07999 * 119.99808 * 185.23411 * 18 17 16 20 20 C 1.38812 * 120.00061 * 5.23969 * 18 17 16 21 21 N 1.31616 * 120.00266 * 352.94921 * 20 18 17 22 22 Si 1.86798 * 119.99789 * 172.94425 * 20 18 17 23 23 H 1.48497 * 109.47680 * 275.01041 * 22 20 18 24 24 H 1.48497 * 109.47264 * 35.01281 * 22 20 18 25 25 H 1.48501 * 109.46844 * 155.00924 * 22 20 18 26 26 C 1.47420 * 108.70353 * 1.29157 * 17 16 15 27 27 N 1.31124 * 106.89660 * 0.22082 * 6 5 4 28 28 H 1.09001 * 109.47447 * 299.99551 * 1 2 3 29 29 H 1.09000 * 109.47038 * 60.00215 * 1 2 3 30 30 H 1.09004 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47447 * 240.00449 * 2 1 3 32 32 H 1.09000 * 109.47038 * 119.99785 * 2 1 3 33 33 H 1.09001 * 109.46771 * 150.02263 * 7 6 5 34 34 H 1.08996 * 109.47306 * 30.03085 * 7 6 5 35 35 H 1.08999 * 109.46983 * 60.00656 * 9 8 7 36 36 H 1.09000 * 109.47601 * 300.00468 * 9 8 7 37 37 H 0.96997 * 120.00478 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47354 * 183.90427 * 14 13 12 39 39 H 1.09002 * 109.46729 * 303.90329 * 14 13 12 40 40 H 1.08998 * 109.46925 * 63.89825 * 14 13 12 41 41 H 1.08996 * 110.71929 * 324.21039 * 15 13 12 42 42 H 1.09003 * 110.72157 * 200.93068 * 15 13 12 43 43 H 1.09000 * 109.87816 * 262.77979 * 16 15 13 44 44 H 1.08997 * 110.01127 * 141.68502 * 16 15 13 45 45 H 0.96999 * 120.00588 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.36644 * 94.47668 * 26 17 16 47 47 H 1.08995 * 110.36947 * 216.80156 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2890 2.1458 1.0475 5 8 2.6770 3.2451 0.7124 6 6 2.7050 3.3285 -0.6211 7 6 3.1258 4.5238 -1.4369 8 8 1.9884 5.3500 -1.6930 9 6 2.2797 6.5171 -2.4645 10 6 1.0151 7.3097 -2.6734 11 8 -0.0324 6.9143 -2.2072 12 7 1.0484 8.4584 -3.3776 13 6 -0.1809 9.2292 -3.5802 14 6 -0.8330 9.5794 -2.2412 15 6 0.0953 10.5070 -4.4158 16 6 0.0742 9.9823 -5.8670 17 7 -0.6943 8.7288 -5.8668 18 6 -0.9300 7.9371 -6.9589 19 1 -1.5784 7.0777 -6.8729 20 6 -0.3353 8.2389 -8.1763 21 7 0.3412 9.3589 -8.3186 22 14 -0.4952 7.0554 -9.6127 23 1 0.5599 6.0150 -9.5168 24 1 -1.8319 6.4097 -9.5756 25 1 -0.3409 7.8009 -10.8877 26 6 -1.1746 8.4691 -4.4975 27 7 2.2913 2.1736 -1.0840 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5505 4.1869 -2.3826 34 1 3.8732 5.0948 -0.8861 35 1 2.6865 6.2212 -3.4315 36 1 3.0097 7.1297 -1.9353 37 1 1.8862 8.7748 -3.7502 38 1 -1.7787 10.0909 -2.4204 39 1 -1.0157 8.6654 -1.6760 40 1 -0.1692 10.2312 -1.6732 41 1 1.0720 10.9243 -4.1708 42 1 -0.6909 11.2461 -4.2616 43 1 1.0921 9.7928 -6.2075 44 1 -0.4055 10.7112 -6.5203 45 1 0.7565 9.5700 -9.1694 46 1 -2.1851 8.8573 -4.3698 47 1 -1.1477 7.4009 -4.2822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716850568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:37 Heat of formation + Delta-G solvation = -6.049696 kcal Electronic energy + Delta-G solvation = -29410.833531 eV Core-core repulsion = 25211.380073 eV Total energy + Delta-G solvation = -4199.453458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.75122 -41.24288 -39.44525 -38.36846 -37.47372 -35.62986 -34.94210 -33.71644 -32.74506 -31.88369 -30.42813 -29.64322 -27.64651 -27.49594 -26.17197 -25.37412 -24.28854 -22.50424 -22.22806 -21.82263 -20.46365 -19.37176 -19.06319 -18.75160 -18.08259 -17.69090 -17.31991 -16.89222 -16.57329 -16.55711 -15.89224 -15.68286 -15.45119 -15.35411 -15.05394 -14.57283 -14.23633 -14.08964 -13.86552 -13.84363 -13.57938 -13.41731 -13.22946 -13.13621 -12.94981 -12.78273 -12.73537 -12.70662 -12.53775 -12.36007 -12.08788 -12.04239 -12.02337 -11.96644 -11.69769 -11.54230 -11.16397 -10.89188 -10.68318 -10.51125 -9.96807 -8.85664 -7.86630 -5.19030 -0.13183 0.98057 1.45070 1.45837 1.54209 1.54336 1.69740 2.02731 2.48683 2.51548 2.89843 3.16851 3.31388 3.58062 3.69123 3.75899 3.89218 4.05388 4.08186 4.13328 4.17598 4.21620 4.26240 4.26583 4.38362 4.40083 4.66683 4.69694 4.71156 4.81512 4.83473 4.87123 4.87936 4.94665 4.96726 5.03551 5.11139 5.18341 5.39016 5.44182 5.66121 5.69678 5.79333 5.83920 6.21053 6.70004 6.99666 7.12577 7.37231 7.77735 8.42377 9.23346 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.002587 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.353167 B =10822.069732 C =12188.028970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.164 3.836 4 N -0.400 5.400 5 O 0.081 5.919 6 C 0.188 3.812 7 C 0.153 3.847 8 O -0.394 6.394 9 C 0.052 3.948 10 C 0.507 3.493 11 O -0.568 6.568 12 N -0.694 5.694 13 C 0.170 3.830 14 C -0.144 4.144 15 C -0.127 4.127 16 C 0.183 3.817 17 N -0.620 5.620 18 C -0.244 4.244 19 H 0.065 0.935 20 C -0.054 4.054 21 N -0.942 5.942 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.279 1.279 25 H -0.290 1.290 26 C 0.128 3.872 27 N -0.489 5.489 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.413 0.587 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.005 0.995 45 H 0.249 0.751 46 H 0.021 0.979 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 -7.921 17.631 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.109 4.109 4 N -0.109 5.109 5 O 0.022 5.978 6 C -0.033 4.033 7 C 0.076 3.924 8 O -0.312 6.312 9 C -0.026 4.026 10 C 0.294 3.706 11 O -0.447 6.447 12 N -0.347 5.347 13 C 0.083 3.917 14 C -0.202 4.202 15 C -0.165 4.165 16 C 0.058 3.942 17 N -0.347 5.347 18 C -0.373 4.373 19 H 0.083 0.917 20 C -0.248 4.248 21 N -0.590 5.590 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.216 1.216 26 C 0.002 3.998 27 N -0.224 5.224 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.153 0.847 37 H 0.250 0.750 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.044 0.956 44 H 0.023 0.977 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.951 -8.814 18.315 22.630 hybrid contribution 0.034 -0.233 -1.553 1.571 sum 9.985 -9.046 16.762 21.505 Atomic orbital electron populations 1.21735 0.93003 1.04143 1.01500 1.20176 0.96968 0.83809 1.06221 1.26601 0.99680 1.01680 0.82903 1.74611 1.18352 0.93302 1.24584 1.85259 1.60436 1.27019 1.25041 1.28869 0.95607 0.96847 0.82017 1.21036 0.88144 0.84695 0.98568 1.87982 1.33044 1.36109 1.74068 1.22400 0.94730 0.86847 0.98633 1.20823 0.91031 0.81034 0.77761 1.90669 1.33907 1.69226 1.50915 1.45605 1.11641 1.23298 1.54165 1.21317 0.84748 0.91016 0.94613 1.21961 1.01001 1.02178 0.95101 1.23095 1.03888 0.95466 0.94034 1.20997 0.94736 0.86169 0.92306 1.44689 1.61722 1.24773 1.03467 1.19266 1.23637 1.05790 0.88657 0.91702 1.25476 1.00262 0.99153 0.99870 1.70132 1.40294 1.23985 1.24624 0.85227 0.77802 0.78317 0.78774 1.20967 1.20441 1.21617 1.22032 0.95355 0.97487 0.84945 1.71927 1.17016 1.03224 1.30255 0.93296 0.93647 0.88301 0.87175 0.87184 0.86011 0.84436 0.87578 0.84734 0.75022 0.91225 0.92286 0.90181 0.87854 0.89325 0.95645 0.97663 0.94179 0.96167 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.89 71.98 0.71 -1.61 16 2 C -0.03 -0.53 6.56 29.85 0.20 -0.34 16 3 C 0.16 3.92 7.47 138.46 1.03 4.96 16 4 N -0.40 -10.26 12.16 -60.32 -0.73 -11.00 16 5 O 0.08 1.94 11.31 74.86 0.85 2.78 16 6 C 0.19 4.20 8.14 88.38 0.72 4.92 16 7 C 0.15 2.27 6.56 71.24 0.47 2.73 16 8 O -0.39 -9.46 9.86 -129.94 -1.28 -10.74 16 9 C 0.05 1.00 6.42 71.24 0.46 1.45 16 10 C 0.51 15.27 7.29 87.66 0.64 15.91 16 11 O -0.57 -22.76 13.33 16.00 0.21 -22.55 16 12 N -0.69 -19.77 5.19 -416.30 -2.16 -21.93 16 13 C 0.17 5.62 0.82 5.07 0.00 5.62 16 14 C -0.14 -4.10 8.59 71.98 0.62 -3.48 16 15 C -0.13 -4.02 5.97 31.78 0.19 -3.83 16 16 C 0.18 8.39 5.38 86.73 0.47 8.86 16 17 N -0.62 -31.94 3.39 -691.55 -2.35 -34.28 16 18 C -0.24 -14.05 10.26 84.03 0.86 -13.19 16 19 H 0.07 3.75 7.84 -2.91 -0.02 3.73 16 20 C -0.05 -3.05 5.48 84.86 0.46 -2.58 16 21 N -0.94 -54.75 10.36 21.65 0.22 -54.52 16 22 Si 0.97 45.94 29.56 68.60 2.03 47.96 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 C 0.13 5.69 6.18 86.93 0.54 6.23 16 27 N -0.49 -12.72 11.55 -303.19 -3.50 -16.22 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.41 9.37 8.51 -92.71 -0.79 8.58 16 38 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16 39 H 0.06 1.96 5.92 -2.39 -0.01 1.95 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.10 2.55 8.09 -2.39 -0.02 2.53 16 42 H 0.09 2.60 8.04 -2.39 -0.02 2.58 16 43 H 0.03 1.26 7.30 -2.39 -0.02 1.25 16 44 H 0.01 0.27 7.60 -2.39 -0.02 0.25 16 45 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 46 H 0.02 0.92 7.99 -2.39 -0.02 0.90 16 47 H 0.02 1.13 6.88 -2.39 -0.02 1.11 16 Total: -1.00 -83.03 389.00 0.86 -82.17 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.20 Total: 12.66 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 7.37 Total: 25.67 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -8.52 Total: -137.95 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.22 Total: -30.51 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -83.03 0.86 -82.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716850568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.122 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds