Wall clock time and date at job start Tue Mar 31 2020 20:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47176 * 2 1 4 4 N 1.29940 * 126.28759 * 90.02432 * 3 2 1 5 5 O 1.21305 * 110.25074 * 179.73849 * 4 3 2 6 6 C 1.33644 * 109.80916 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.55034 * 180.02562 * 6 5 4 8 8 O 1.42902 * 109.47331 * 269.97978 * 7 6 5 9 9 C 1.42898 * 114.00285 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47215 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99863 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00140 * 180.02562 * 12 10 9 14 14 C 1.53000 * 110.63876 * 300.70075 * 13 12 10 15 15 C 1.55157 * 110.72112 * 177.55823 * 13 12 10 16 16 C 1.55389 * 101.36809 * 277.04600 * 15 13 12 17 17 N 1.47424 * 104.87029 * 323.01508 * 16 15 13 18 18 C 1.36940 * 125.64915 * 204.09928 * 17 16 15 19 19 H 1.08000 * 120.00078 * 169.98271 * 18 17 16 20 20 C 1.38816 * 119.99413 * 349.97975 * 18 17 16 21 21 N 1.31608 * 120.00342 * 350.42437 * 20 18 17 22 22 Si 1.86802 * 119.99500 * 170.42177 * 20 18 17 23 23 H 1.48500 * 109.46886 * 94.14162 * 22 20 18 24 24 H 1.48495 * 109.47262 * 214.14066 * 22 20 18 25 25 H 1.48500 * 109.47362 * 334.14662 * 22 20 18 26 26 C 1.47024 * 108.70734 * 24.13499 * 17 16 15 27 27 N 1.31127 * 106.89881 * 0.02562 * 6 5 4 28 28 H 1.09006 * 109.47279 * 300.00112 * 1 2 3 29 29 H 1.08996 * 109.47184 * 60.00430 * 1 2 3 30 30 H 1.09007 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47461 * 239.99966 * 2 1 3 32 32 H 1.09003 * 109.47531 * 119.99682 * 2 1 3 33 33 H 1.09001 * 109.47224 * 29.97493 * 7 6 5 34 34 H 1.08996 * 109.47293 * 149.97725 * 7 6 5 35 35 H 1.08994 * 109.47166 * 299.99856 * 9 8 7 36 36 H 1.09002 * 109.46876 * 59.99937 * 9 8 7 37 37 H 0.97005 * 119.99959 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47337 * 59.30296 * 14 13 12 39 39 H 1.09006 * 109.47038 * 179.29909 * 14 13 12 40 40 H 1.08996 * 109.47394 * 299.29764 * 14 13 12 41 41 H 1.09010 * 111.00025 * 35.21409 * 15 13 12 42 42 H 1.08997 * 111.00410 * 159.06110 * 15 13 12 43 43 H 1.08998 * 110.34262 * 204.16724 * 16 15 13 44 44 H 1.09001 * 110.34883 * 81.86779 * 16 15 13 45 45 H 0.97005 * 120.00244 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88283 * 239.53037 * 26 17 16 47 47 H 1.08995 * 109.88414 * 118.35199 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1458 1.0474 5 8 2.6825 3.2432 0.7123 6 6 2.7155 3.3248 -0.6213 7 6 3.1446 4.5169 -1.4371 8 8 2.0118 5.3477 -1.6990 9 6 2.3114 6.5130 -2.4701 10 6 1.0510 7.3106 -2.6853 11 8 -0.0002 6.9199 -2.2235 12 7 1.0921 8.4586 -3.3902 13 6 -0.1330 9.2343 -3.5990 14 6 -1.1838 8.3963 -4.3302 15 6 0.1702 10.5393 -4.3815 16 6 0.6488 11.4774 -3.2389 17 7 -0.1980 11.1289 -2.0836 18 6 -0.4819 11.9505 -1.0255 19 1 -1.2387 11.6666 -0.3092 20 6 0.2031 13.1483 -0.8736 21 7 1.2485 13.4089 -1.6293 22 14 -0.3592 14.3903 0.4034 23 1 0.4008 14.1842 1.6624 24 1 -0.1159 15.7650 -0.1023 25 1 -1.8096 14.2087 0.6656 26 6 -0.6866 9.7528 -2.2550 27 7 2.3030 2.1694 -1.0841 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8921 5.0857 -0.8840 34 1 3.5717 4.1769 -2.3805 35 1 3.0413 7.1229 -1.9380 36 1 2.7214 6.2146 -3.4350 37 1 1.9330 8.7713 -3.7593 38 1 -1.4129 7.5073 -3.7425 39 1 -2.0903 8.9867 -4.4643 40 1 -0.7970 8.0981 -5.3046 41 1 0.9590 10.3797 -5.1167 42 1 -0.7307 10.9287 -4.8557 43 1 0.4997 12.5205 -3.5176 44 1 1.6981 11.2911 -3.0101 45 1 1.7274 14.2458 -1.5230 46 1 -1.7764 9.7463 -2.2758 47 1 -0.3254 9.1269 -1.4391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716850569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:43 Heat of formation + Delta-G solvation = 20.686707 kcal Electronic energy + Delta-G solvation = -29214.842255 eV Core-core repulsion = 25016.548174 eV Total energy + Delta-G solvation = -4198.294081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.87448 -40.03778 -38.40595 -37.02842 -36.64006 -34.16830 -33.99671 -32.13591 -31.89742 -30.26790 -28.93102 -28.60769 -26.80596 -25.68431 -25.41310 -23.62485 -23.48519 -21.49193 -21.04588 -20.37030 -19.06514 -18.47119 -17.97477 -17.30093 -16.97297 -16.61618 -16.46619 -15.69418 -15.41775 -15.06728 -14.66143 -14.56409 -14.45002 -13.79756 -13.78969 -13.38377 -13.18869 -13.00799 -12.79093 -12.49356 -12.38939 -12.21454 -12.08542 -11.89817 -11.72278 -11.72057 -11.61559 -11.60228 -11.28267 -10.97637 -10.81031 -10.44947 -10.39175 -10.30423 -10.19268 -10.09530 -9.99855 -9.69479 -9.29559 -8.68347 -8.57754 -6.78086 -5.74946 -3.05772 0.72720 1.83129 2.33214 2.81208 2.95745 3.27684 3.40558 3.46452 3.48947 3.67981 4.00326 4.44203 4.50836 4.59214 4.72194 4.77645 4.79890 4.83214 4.91060 5.02173 5.04352 5.15853 5.36818 5.38324 5.44354 5.47010 5.53624 5.54522 5.67787 5.71274 5.80624 5.99918 6.13536 6.18499 6.29604 6.40592 6.44897 6.52934 6.67913 6.84067 7.12121 7.44211 7.52358 7.76264 7.78987 7.85815 8.26077 8.47774 9.20798 9.82299 10.49641 11.38656 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002223 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.904866 B =12593.835486 C =13335.784388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C 0.169 3.831 4 N -0.378 5.378 5 O 0.090 5.910 6 C 0.188 3.812 7 C 0.155 3.845 8 O -0.354 6.354 9 C 0.045 3.955 10 C 0.515 3.485 11 O -0.515 6.515 12 N -0.706 5.706 13 C 0.163 3.837 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.224 4.224 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.135 3.865 27 N -0.461 5.461 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.398 0.602 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -21.729 -5.439 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.104 4.104 4 N -0.084 5.084 5 O 0.030 5.970 6 C -0.034 4.034 7 C 0.077 3.923 8 O -0.271 6.271 9 C -0.034 4.034 10 C 0.299 3.701 11 O -0.390 6.390 12 N -0.359 5.359 13 C 0.077 3.923 14 C -0.210 4.210 15 C -0.187 4.187 16 C 0.049 3.951 17 N -0.329 5.329 18 C -0.352 4.352 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.009 3.991 27 N -0.197 5.197 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.516 -22.436 -4.429 23.525 hybrid contribution 0.591 1.136 0.446 1.356 sum 6.107 -21.301 -3.983 22.514 Atomic orbital electron populations 1.21755 0.93097 1.02864 1.03050 1.19950 0.97023 0.85386 1.04660 1.25940 1.00533 1.00565 0.83364 1.74655 1.16870 0.92923 1.23913 1.85324 1.59944 1.27203 1.24556 1.28157 0.96843 0.96168 0.82187 1.20589 0.88882 0.85572 0.97295 1.88068 1.30443 1.34896 1.73684 1.22337 0.97073 0.87237 0.96776 1.19910 0.89905 0.81389 0.78861 1.90716 1.31305 1.69141 1.47803 1.45838 1.11943 1.22902 1.55195 1.21329 0.83815 0.90338 0.96775 1.22063 0.98178 1.01273 0.99489 1.23440 1.01520 0.95089 0.98690 1.21484 0.93098 0.96978 0.83540 1.44483 1.57485 1.09220 1.21751 1.19044 1.15396 0.98677 1.02094 0.90681 1.24786 0.97032 0.99082 0.99591 1.69931 1.19879 1.24784 1.42300 0.86130 0.78189 0.80877 0.80756 1.21670 1.21649 1.20606 1.21625 0.96585 0.87246 0.93681 1.71877 1.16089 1.02232 1.29465 0.92199 0.91759 0.90958 0.88514 0.89030 0.88751 0.88058 0.89312 0.89702 0.76744 0.90764 0.91726 0.93110 0.91640 0.90474 0.91174 0.95643 0.93812 0.95126 0.94827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.15 0.37 -0.75 16 2 C -0.03 -0.24 6.56 -27.88 -0.18 -0.43 16 3 C 0.17 1.96 7.47 -156.37 -1.17 0.79 16 4 N -0.38 -4.91 12.16 30.90 0.38 -4.53 16 5 O 0.09 1.14 11.31 18.10 0.20 1.34 16 6 C 0.19 2.13 8.14 -13.06 -0.11 2.02 16 7 C 0.16 1.28 6.56 36.00 0.24 1.52 16 8 O -0.35 -4.42 9.86 -55.14 -0.54 -4.96 16 9 C 0.05 0.47 6.42 36.01 0.23 0.70 16 10 C 0.52 7.88 7.12 -10.99 -0.08 7.80 16 11 O -0.51 -10.17 13.45 -14.35 -0.19 -10.36 16 12 N -0.71 -10.32 5.15 -45.91 -0.24 -10.55 16 13 C 0.16 2.80 0.80 -129.98 -0.10 2.70 16 14 C -0.15 -2.33 8.41 37.16 0.31 -2.02 16 15 C -0.15 -2.53 6.11 -24.32 -0.15 -2.68 16 16 C 0.17 3.98 5.41 -2.27 -0.01 3.96 16 17 N -0.60 -15.42 3.40 -169.76 -0.58 -16.00 16 18 C -0.22 -6.33 10.24 -15.06 -0.15 -6.48 16 19 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 20 C -0.01 -0.25 5.40 -17.43 -0.09 -0.34 16 21 N -0.92 -26.57 10.68 55.49 0.59 -25.98 16 22 Si 0.91 22.21 29.56 -169.99 -5.03 17.19 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.14 3.00 6.16 -3.06 -0.02 2.98 16 27 N -0.46 -5.66 11.55 -9.87 -0.11 -5.78 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 4.65 8.48 -40.82 -0.35 4.31 16 38 H 0.07 1.27 6.21 -51.93 -0.32 0.95 16 39 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.91 8.06 -51.92 -0.42 0.49 16 42 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.07 1.80 6.94 -51.93 -0.36 1.44 16 44 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.03 0.69 7.80 -51.93 -0.41 0.29 16 47 H 0.03 0.82 6.68 -51.93 -0.35 0.48 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -36.51 389.10 -7.80 -44.32 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.23 Total: -0.32 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.92 Total: 9.77 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.04 Total: -62.84 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.53 Total: -13.98 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.51 -7.80 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716850569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.003 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds