Wall clock time and date at job start Tue Mar 31 2020 20:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.47176 * 2 1 4 4 N 1.29940 * 126.28759 * 90.02432 * 3 2 1 5 5 O 1.21305 * 110.25074 * 179.73849 * 4 3 2 6 6 C 1.33644 * 109.80916 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.55034 * 180.02562 * 6 5 4 8 8 O 1.42902 * 109.47331 * 269.97978 * 7 6 5 9 9 C 1.42898 * 114.00285 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47215 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99863 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00194 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00140 * 180.02562 * 12 10 9 14 14 C 1.53000 * 110.63876 * 300.70075 * 13 12 10 15 15 C 1.55157 * 110.72112 * 177.55823 * 13 12 10 16 16 C 1.55389 * 101.36809 * 277.04600 * 15 13 12 17 17 N 1.47424 * 104.87029 * 323.01508 * 16 15 13 18 18 C 1.36940 * 125.64915 * 204.09928 * 17 16 15 19 19 H 1.08000 * 120.00078 * 169.98271 * 18 17 16 20 20 C 1.38816 * 119.99413 * 349.97975 * 18 17 16 21 21 N 1.31608 * 120.00342 * 350.42437 * 20 18 17 22 22 Si 1.86802 * 119.99500 * 170.42177 * 20 18 17 23 23 H 1.48500 * 109.46886 * 94.14162 * 22 20 18 24 24 H 1.48495 * 109.47262 * 214.14066 * 22 20 18 25 25 H 1.48500 * 109.47362 * 334.14662 * 22 20 18 26 26 C 1.47024 * 108.70734 * 24.13499 * 17 16 15 27 27 N 1.31127 * 106.89881 * 0.02562 * 6 5 4 28 28 H 1.09006 * 109.47279 * 300.00112 * 1 2 3 29 29 H 1.08996 * 109.47184 * 60.00430 * 1 2 3 30 30 H 1.09007 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47461 * 239.99966 * 2 1 3 32 32 H 1.09003 * 109.47531 * 119.99682 * 2 1 3 33 33 H 1.09001 * 109.47224 * 29.97493 * 7 6 5 34 34 H 1.08996 * 109.47293 * 149.97725 * 7 6 5 35 35 H 1.08994 * 109.47166 * 299.99856 * 9 8 7 36 36 H 1.09002 * 109.46876 * 59.99937 * 9 8 7 37 37 H 0.97005 * 119.99959 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.47337 * 59.30296 * 14 13 12 39 39 H 1.09006 * 109.47038 * 179.29909 * 14 13 12 40 40 H 1.08996 * 109.47394 * 299.29764 * 14 13 12 41 41 H 1.09010 * 111.00025 * 35.21409 * 15 13 12 42 42 H 1.08997 * 111.00410 * 159.06110 * 15 13 12 43 43 H 1.08998 * 110.34262 * 204.16724 * 16 15 13 44 44 H 1.09001 * 110.34883 * 81.86779 * 16 15 13 45 45 H 0.97005 * 120.00244 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.88283 * 239.53037 * 26 17 16 47 47 H 1.08995 * 109.88414 * 118.35199 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1458 1.0474 5 8 2.6825 3.2432 0.7123 6 6 2.7155 3.3248 -0.6213 7 6 3.1446 4.5169 -1.4371 8 8 2.0118 5.3477 -1.6990 9 6 2.3114 6.5130 -2.4701 10 6 1.0510 7.3106 -2.6853 11 8 -0.0002 6.9199 -2.2235 12 7 1.0921 8.4586 -3.3902 13 6 -0.1330 9.2343 -3.5990 14 6 -1.1838 8.3963 -4.3302 15 6 0.1702 10.5393 -4.3815 16 6 0.6488 11.4774 -3.2389 17 7 -0.1980 11.1289 -2.0836 18 6 -0.4819 11.9505 -1.0255 19 1 -1.2387 11.6666 -0.3092 20 6 0.2031 13.1483 -0.8736 21 7 1.2485 13.4089 -1.6293 22 14 -0.3592 14.3903 0.4034 23 1 0.4008 14.1842 1.6624 24 1 -0.1159 15.7650 -0.1023 25 1 -1.8096 14.2087 0.6656 26 6 -0.6866 9.7528 -2.2550 27 7 2.3030 2.1694 -1.0841 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8921 5.0857 -0.8840 34 1 3.5717 4.1769 -2.3805 35 1 3.0413 7.1229 -1.9380 36 1 2.7214 6.2146 -3.4350 37 1 1.9330 8.7713 -3.7593 38 1 -1.4129 7.5073 -3.7425 39 1 -2.0903 8.9867 -4.4643 40 1 -0.7970 8.0981 -5.3046 41 1 0.9590 10.3797 -5.1167 42 1 -0.7307 10.9287 -4.8557 43 1 0.4997 12.5205 -3.5176 44 1 1.6981 11.2911 -3.0101 45 1 1.7274 14.2458 -1.5230 46 1 -1.7764 9.7463 -2.2758 47 1 -0.3254 9.1269 -1.4391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716850569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:42 Heat of formation + Delta-G solvation = -7.361262 kcal Electronic energy + Delta-G solvation = -29216.058506 eV Core-core repulsion = 25016.548174 eV Total energy + Delta-G solvation = -4199.510332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.74866 -41.29377 -39.45279 -38.37071 -37.46636 -35.69140 -34.93564 -33.72682 -32.74047 -31.88424 -30.40523 -29.65941 -27.67244 -27.53021 -26.16091 -25.34152 -24.28512 -22.47268 -22.23188 -21.99495 -20.44983 -19.36588 -19.04307 -18.75900 -18.11141 -17.69243 -17.30840 -16.91272 -16.64479 -16.56057 -15.90447 -15.68967 -15.48887 -15.27296 -14.92846 -14.56750 -14.32223 -14.07725 -14.03546 -13.87771 -13.56122 -13.29886 -13.21159 -13.18711 -12.96851 -12.86182 -12.72082 -12.69660 -12.52389 -12.36413 -12.14898 -12.03586 -12.00172 -11.92671 -11.73459 -11.56830 -11.17990 -10.88976 -10.69173 -10.56590 -10.00525 -8.85102 -7.90249 -5.23007 -0.13072 0.98431 1.44777 1.45147 1.55223 1.55531 1.68108 2.00650 2.47871 2.50035 2.91328 3.15721 3.28903 3.58312 3.71269 3.74038 3.87776 4.01543 4.09040 4.14021 4.17560 4.18774 4.24952 4.27681 4.38711 4.40559 4.62779 4.69386 4.69723 4.82532 4.83234 4.87902 4.88312 4.93113 4.96975 5.02918 5.11741 5.19653 5.35057 5.42697 5.61344 5.66280 5.75854 5.82921 6.20551 6.67800 6.99206 7.09454 7.35990 7.75390 8.41309 9.21165 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002223 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.904866 B =12593.835486 C =13335.784388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.032 4.032 3 C 0.165 3.835 4 N -0.404 5.404 5 O 0.073 5.927 6 C 0.187 3.813 7 C 0.153 3.847 8 O -0.395 6.395 9 C 0.053 3.947 10 C 0.505 3.495 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.173 3.827 14 C -0.142 4.142 15 C -0.127 4.127 16 C 0.177 3.823 17 N -0.622 5.622 18 C -0.249 4.249 19 H 0.065 0.935 20 C -0.055 4.055 21 N -0.940 5.940 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.134 3.866 27 N -0.481 5.481 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.416 0.584 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.010 0.990 45 H 0.250 0.750 46 H 0.018 0.982 47 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -22.655 -7.208 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.108 4.108 4 N -0.113 5.113 5 O 0.016 5.984 6 C -0.034 4.034 7 C 0.076 3.924 8 O -0.314 6.314 9 C -0.026 4.026 10 C 0.292 3.708 11 O -0.447 6.447 12 N -0.353 5.353 13 C 0.087 3.913 14 C -0.200 4.200 15 C -0.165 4.165 16 C 0.053 3.947 17 N -0.348 5.348 18 C -0.378 4.378 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.588 5.588 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.008 3.992 27 N -0.217 5.217 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.253 0.747 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.028 0.972 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 6.930 -23.351 -6.228 25.141 hybrid contribution 0.150 1.403 1.031 1.748 sum 7.080 -21.948 -5.197 23.640 Atomic orbital electron populations 1.21737 0.92942 1.04180 1.01521 1.20188 0.97012 0.83613 1.06283 1.26652 0.99461 1.01714 0.82944 1.74640 1.18353 0.93423 1.24913 1.85282 1.60443 1.27289 1.25396 1.28922 0.95651 0.96948 0.81927 1.21049 0.88004 0.84531 0.98850 1.87989 1.32975 1.35918 1.74482 1.22416 0.94194 0.86596 0.99360 1.20911 0.91102 0.81348 0.77478 1.90698 1.33792 1.70456 1.49761 1.45733 1.11841 1.22541 1.55172 1.21098 0.85415 0.91109 0.93722 1.21972 0.97796 0.99960 1.00302 1.23301 1.03091 0.92854 0.97273 1.21359 0.92074 0.96570 0.84726 1.44763 1.57748 1.10352 1.21973 1.19288 1.15564 0.99826 1.03113 0.91729 1.25532 0.97227 1.00492 1.01683 1.70092 1.20440 1.24948 1.43340 0.85158 0.77884 0.78457 0.78360 1.21425 1.21208 1.20059 1.21698 0.95975 0.85546 0.96004 1.71899 1.16947 1.02912 1.29917 0.93688 0.93248 0.88216 0.86746 0.87488 0.85567 0.84725 0.86834 0.84940 0.74707 0.92761 0.91471 0.89908 0.87235 0.89726 0.94517 0.97229 0.94040 0.96354 0.97790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 71.98 0.71 -1.38 16 2 C -0.03 -0.47 6.56 29.85 0.20 -0.28 16 3 C 0.17 3.81 7.47 138.47 1.03 4.84 16 4 N -0.40 -10.66 12.16 -60.32 -0.73 -11.40 16 5 O 0.07 1.85 11.31 74.82 0.85 2.70 16 6 C 0.19 4.10 8.14 88.38 0.72 4.82 16 7 C 0.15 2.14 6.56 71.23 0.47 2.61 16 8 O -0.40 -9.18 9.86 -129.94 -1.28 -10.46 16 9 C 0.05 0.93 6.42 71.24 0.46 1.39 16 10 C 0.50 14.80 7.12 87.66 0.62 15.42 16 11 O -0.57 -22.82 13.45 16.00 0.22 -22.60 16 12 N -0.70 -19.02 5.15 -417.56 -2.15 -21.16 16 13 C 0.17 5.74 0.80 4.79 0.00 5.75 16 14 C -0.14 -4.12 8.41 71.98 0.61 -3.51 16 15 C -0.13 -4.03 6.11 32.16 0.20 -3.83 16 16 C 0.18 8.12 5.41 87.02 0.47 8.59 16 17 N -0.62 -32.61 3.40 -691.01 -2.35 -34.96 16 18 C -0.25 -14.50 10.24 84.03 0.86 -13.64 16 19 H 0.06 3.77 7.85 -2.91 -0.02 3.75 16 20 C -0.06 -3.16 5.40 84.86 0.46 -2.70 16 21 N -0.94 -54.98 10.68 21.65 0.23 -54.75 16 22 Si 0.97 46.26 29.56 68.60 2.03 48.29 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 C 0.13 6.11 6.16 86.73 0.53 6.64 16 27 N -0.48 -11.53 11.55 -303.20 -3.50 -15.03 16 28 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.42 8.34 8.48 -92.70 -0.79 7.55 16 38 H 0.05 1.83 6.21 -2.39 -0.01 1.81 16 39 H 0.07 1.89 8.12 -2.38 -0.02 1.87 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 2.57 8.06 -2.38 -0.02 2.55 16 42 H 0.08 2.61 8.05 -2.39 -0.02 2.60 16 43 H 0.04 1.91 6.94 -2.39 -0.02 1.89 16 44 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 45 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 46 H 0.02 0.87 7.80 -2.39 -0.02 0.85 16 47 H 0.00 0.21 6.68 -2.39 -0.02 0.19 16 Total: -1.00 -85.06 389.10 0.85 -84.21 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.20 Total: 10.47 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 7.34 Total: 24.70 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -8.50 Total: -137.30 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.22 Total: -30.37 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -85.06 0.85 -84.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716850569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.846 kcal (2) G-P(sol) polarization free energy of solvation -85.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds