Wall clock time and date at job start Tue Mar 31 2020 21:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 7 7 C 1.52997 * 109.47482 * 179.97438 * 5 2 1 8 8 N 1.46505 * 109.47253 * 185.00307 * 7 5 2 9 9 C 1.36932 * 119.99986 * 180.02562 * 8 7 5 10 10 H 1.08009 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00337 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99671 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00503 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46686 * 60.00279 * 13 11 9 15 15 H 1.48495 * 109.47217 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47056 * 300.00428 * 13 11 9 17 17 N 1.46510 * 109.46966 * 59.99937 * 5 2 1 18 18 C 1.34779 * 119.99902 * 275.00091 * 17 5 2 19 19 O 1.21276 * 119.99595 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99614 * 179.97438 * 18 17 5 21 21 N 1.46494 * 109.46847 * 179.97438 * 20 18 17 22 22 C 1.36167 * 119.85058 * 89.99882 * 21 20 18 23 23 C 1.35546 * 119.25826 * 179.97438 * 22 21 20 24 24 C 1.40738 * 118.99767 * 0.02562 * 23 22 21 25 25 O 1.35164 * 120.16418 * 179.97438 * 24 23 22 26 26 N 1.32427 * 119.67131 * 0.02562 * 24 23 22 27 27 C 1.33271 * 120.72676 * 359.73819 * 26 24 23 28 28 O 1.21977 * 119.47193 * 180.28093 * 27 26 24 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 1.09003 * 109.47101 * 304.99753 * 7 5 2 39 39 H 1.09002 * 109.47196 * 65.00018 * 7 5 2 40 40 H 0.96995 * 119.99905 * 359.97438 * 8 7 5 41 41 H 0.97000 * 119.99905 * 179.97438 * 12 11 9 42 42 H 0.96993 * 119.99602 * 95.00318 * 17 5 2 43 43 H 1.08989 * 109.47470 * 300.00458 * 20 18 17 44 44 H 1.09002 * 109.46795 * 60.00420 * 20 18 17 45 45 H 1.07997 * 120.37077 * 0.02562 * 22 21 20 46 46 H 1.08003 * 120.49984 * 179.97438 * 23 22 21 47 47 H 0.96694 * 113.99921 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6767 -1.7489 -1.2491 7 6 3.5700 -0.7207 -1.2494 8 7 4.0583 -1.3045 -2.5013 9 6 5.4046 -1.4102 -2.7281 10 1 6.1065 -1.0629 -1.9842 11 6 5.8674 -1.9638 -3.9139 12 7 5.0121 -2.3866 -4.8206 13 14 7.7039 -2.1074 -4.2237 14 1 8.3190 -2.9529 -3.1691 15 1 7.9347 -2.7275 -5.5531 16 1 8.3179 -0.7556 -4.1951 17 7 1.5517 -0.0307 -2.4454 18 6 0.3297 -0.3166 -2.9369 19 8 -0.3653 -1.1458 -2.3891 20 6 -0.1728 0.3942 -4.1671 21 7 -1.5154 -0.0903 -4.4967 22 6 -2.6077 0.5287 -3.9696 23 6 -3.8444 0.0707 -4.2831 24 6 -3.9641 -1.0345 -5.1461 25 8 -5.1858 -1.5109 -5.4740 26 7 -2.8739 -1.6060 -5.6346 27 6 -1.6640 -1.1428 -5.3220 28 8 -0.6754 -1.6835 -5.7890 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 3.9330 0.3032 -1.1602 39 1 3.9338 -1.3099 -0.4076 40 1 3.4280 -1.6167 -3.1691 41 1 5.3354 -2.7731 -5.6494 42 1 2.1078 0.6322 -2.8836 43 1 -0.2096 1.4668 -3.9774 44 1 0.4998 0.1956 -5.0016 45 1 -2.4901 1.3755 -3.3098 46 1 -4.7245 0.5463 -3.8760 47 1 -5.1642 -2.2707 -6.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717962022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:11 Heat of formation + Delta-G solvation = -49.392271 kcal Electronic energy + Delta-G solvation = -30658.434550 eV Core-core repulsion = 26457.101617 eV Total energy + Delta-G solvation = -4201.332933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92563 -40.10684 -38.83608 -37.49727 -36.68405 -34.60149 -34.45613 -33.33324 -31.46900 -31.07271 -28.74761 -27.62664 -27.21230 -26.47614 -24.96582 -23.85986 -23.32064 -21.55956 -20.68700 -19.88694 -18.71479 -18.29038 -17.70982 -17.45959 -16.89462 -15.99300 -15.86644 -15.66278 -15.50469 -14.91004 -14.74623 -14.33909 -14.23714 -14.02211 -13.94842 -13.70343 -13.54104 -13.42907 -13.11786 -12.78113 -12.40318 -12.25976 -12.05242 -11.95930 -11.87109 -11.46233 -11.25868 -11.13172 -10.82051 -10.80148 -10.77127 -10.61095 -10.44537 -10.27380 -9.98612 -9.91252 -9.73905 -9.72175 -8.89390 -8.71150 -8.67731 -6.94680 -5.74966 -3.06441 0.51259 1.58091 2.16246 2.67760 3.00145 3.30000 3.43572 3.48151 3.50266 3.78600 4.05569 4.29964 4.54268 4.56081 4.73055 4.83204 4.87760 4.98020 5.07691 5.11287 5.15043 5.29298 5.50337 5.54599 5.63070 5.72045 5.80647 5.86828 5.89994 5.93176 6.02280 6.04840 6.09939 6.21115 6.22378 6.39022 6.39699 6.42666 6.54995 6.67519 6.85410 6.87679 7.66286 7.68036 7.72583 8.14151 8.33910 8.41547 9.53014 10.08699 10.43420 11.46431 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.003553 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.934235 B = 7879.384860 C = 9975.579551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.150 3.850 6 H 0.087 0.913 7 C 0.143 3.857 8 N -0.731 5.731 9 C -0.248 4.248 10 H 0.069 0.931 11 C -0.009 4.009 12 N -0.926 5.926 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.700 5.700 18 C 0.503 3.497 19 O -0.531 6.531 20 C 0.072 3.928 21 N -0.507 5.507 22 C 0.214 3.786 23 C -0.291 4.291 24 C 0.456 3.544 25 O -0.451 6.451 26 N -0.612 5.612 27 C 0.657 3.343 28 O -0.515 6.515 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.405 0.595 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.180 0.820 46 H 0.163 0.837 47 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.064 12.722 6.395 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.045 3.955 6 H 0.105 0.895 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.379 4.379 10 H 0.087 0.913 11 C -0.206 4.206 12 N -0.573 5.573 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.351 5.351 18 C 0.287 3.713 19 O -0.407 6.407 20 C -0.055 4.055 21 N -0.223 5.223 22 C 0.077 3.923 23 C -0.318 4.318 24 C 0.253 3.747 25 O -0.246 6.246 26 N -0.368 5.368 27 C 0.358 3.642 28 O -0.387 6.387 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.240 0.760 43 H 0.139 0.861 44 H 0.155 0.845 45 H 0.197 0.803 46 H 0.180 0.820 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -18.786 11.470 6.258 22.883 hybrid contribution 1.147 0.192 -0.496 1.264 sum -17.639 11.662 5.762 21.917 Atomic orbital electron populations 1.21863 0.94198 1.02253 1.00113 1.20898 0.95952 0.95849 0.95078 1.21909 1.01683 0.95173 1.01019 1.21885 1.01677 1.00200 0.96127 1.21317 0.95232 0.96409 0.82502 0.89541 1.21085 0.89014 0.97153 0.91283 1.42362 1.04931 1.73766 1.16592 1.19120 0.83244 1.34577 1.00969 0.91278 1.24769 0.97522 1.01341 0.96953 1.69665 1.32661 1.46278 1.08745 0.86294 0.85267 0.77610 0.77106 1.21287 1.21682 1.21291 1.45815 1.16446 1.43197 1.29618 1.20377 0.82587 0.83475 0.84821 1.90736 1.56704 1.33219 1.60082 1.21883 0.83883 0.99717 0.99987 1.46040 1.07208 1.28911 1.40176 1.22281 0.85425 0.94221 0.90324 1.20525 0.98230 1.02957 1.10040 1.20416 0.84489 0.85929 0.83826 1.84964 1.23966 1.50579 1.65096 1.69678 0.97654 1.34970 1.34514 1.17310 0.88153 0.79223 0.79501 1.91112 1.36476 1.56673 1.54436 0.92059 0.93344 0.93911 0.93183 0.91798 0.92966 0.92567 0.91805 0.92860 0.95380 0.94772 0.77970 0.93300 0.75968 0.86064 0.84491 0.80320 0.81977 0.72692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 7.00 37.16 0.26 -1.30 16 2 C -0.08 -0.95 0.62 -154.51 -0.10 -1.05 16 3 C -0.14 -1.52 7.97 37.16 0.30 -1.23 16 4 C -0.14 -1.70 8.12 37.16 0.30 -1.40 16 5 C 0.15 2.38 1.69 -67.93 -0.11 2.27 16 6 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 7 C 0.14 2.66 5.10 -4.04 -0.02 2.64 16 8 N -0.73 -17.96 5.43 -59.90 -0.33 -18.29 16 9 C -0.25 -6.81 9.99 -15.06 -0.15 -6.96 16 10 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 N -0.70 -10.11 3.64 -53.80 -0.20 -10.31 16 18 C 0.50 7.41 6.25 -10.98 -0.07 7.34 16 19 O -0.53 -9.50 13.56 5.56 0.08 -9.43 16 20 C 0.07 0.82 5.83 -5.20 -0.03 0.79 16 21 N -0.51 -6.33 2.08 -123.17 -0.26 -6.59 16 22 C 0.21 1.71 10.40 -16.59 -0.17 1.54 16 23 C -0.29 -2.35 10.03 -39.60 -0.40 -2.74 16 24 C 0.46 4.96 7.91 -16.35 -0.13 4.83 16 25 O -0.45 -3.61 13.55 -17.19 -0.23 -3.85 16 26 N -0.61 -9.38 10.40 -16.72 -0.17 -9.56 16 27 C 0.66 11.40 8.34 -88.44 -0.74 10.66 16 28 O -0.51 -11.51 16.72 4.94 0.08 -11.43 16 29 H 0.06 0.89 7.53 -51.93 -0.39 0.50 16 30 H 0.05 0.58 5.78 -51.93 -0.30 0.28 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 34 H 0.05 0.52 7.60 -51.93 -0.39 0.13 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.50 6.17 -51.93 -0.32 0.18 16 39 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 40 H 0.39 10.35 7.33 -40.82 -0.30 10.05 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 42 H 0.41 5.41 8.60 -40.82 -0.35 5.06 16 43 H 0.12 0.70 8.03 -51.94 -0.42 0.29 16 44 H 0.14 1.81 7.37 -51.93 -0.38 1.43 16 45 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 46 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.42 2.02 8.98 45.56 0.41 2.43 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -39.69 383.44 -6.64 -46.33 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -5.94 Total: 12.63 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: -1.15 Total: 15.03 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -0.23 Total: -72.47 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.08 Total: -24.70 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.69 -6.64 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717962022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.058 kcal (2) G-P(sol) polarization free energy of solvation -39.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds