Wall clock time and date at job start Tue Mar 31 2020 20:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33693 * 126.27135 * 90.02550 * 3 2 1 5 5 C 1.30611 * 108.99480 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15469 * 359.97438 * 5 4 3 7 7 C 1.35338 * 107.68524 * 359.76134 * 6 5 4 8 8 C 1.46715 * 126.64591 * 180.25506 * 7 6 5 9 9 O 1.21693 * 120.00116 * 180.14970 * 8 7 6 10 10 N 1.34779 * 120.00052 * 0.15177 * 8 7 6 11 11 C 1.46501 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46656 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47499 * 64.99868 * 12 11 10 14 14 C 1.53005 * 109.47136 * 184.99830 * 12 11 10 15 15 N 1.46900 * 109.47132 * 304.99164 * 12 11 10 16 16 C 1.46898 * 111.00309 * 298.95771 * 15 12 11 17 17 C 1.46902 * 111.00129 * 174.99907 * 15 12 11 18 18 C 1.50702 * 109.47319 * 190.00253 * 17 15 12 19 19 O 1.21290 * 119.99695 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99775 * 179.97438 * 18 17 15 21 21 C 1.37099 * 119.99812 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99577 * 0.02562 * 21 20 18 23 23 C 1.38939 * 119.99896 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00089 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00358 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47292 * 89.99442 * 25 23 21 27 27 H 1.48497 * 109.47028 * 210.00143 * 25 23 21 28 28 H 1.48500 * 109.46779 * 329.99955 * 25 23 21 29 29 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08002 * 125.42310 * 180.02562 * 5 4 3 35 35 H 0.96996 * 119.99810 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47145 * 299.99222 * 11 10 8 37 37 H 1.08996 * 109.47822 * 59.99842 * 11 10 8 38 38 H 1.09000 * 109.46970 * 59.99191 * 14 12 11 39 39 H 1.08996 * 109.47537 * 179.97438 * 14 12 11 40 40 H 1.09007 * 109.46831 * 299.99940 * 14 12 11 41 41 H 1.09001 * 109.46707 * 60.00258 * 16 15 12 42 42 H 1.09000 * 109.46626 * 179.97438 * 16 15 12 43 43 H 1.08994 * 109.47406 * 299.99883 * 16 15 12 44 44 H 1.09001 * 109.47146 * 310.01004 * 17 15 12 45 45 H 1.09004 * 109.46952 * 70.00279 * 17 15 12 46 46 H 0.96999 * 120.00060 * 0.02562 * 20 18 17 47 47 H 0.96996 * 120.00339 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2965 2.1664 1.0779 5 6 2.7126 3.3421 0.6900 6 8 2.7275 3.3833 -0.6460 7 6 2.3073 2.1793 -1.0992 8 6 2.1707 1.7705 -2.5016 9 8 1.7766 0.6517 -2.7737 10 7 2.4817 2.6340 -3.4886 11 6 2.3447 2.2259 -4.8889 12 6 2.7587 3.3832 -5.8001 13 1 3.8196 3.5921 -5.6630 14 6 2.4982 3.0022 -7.2589 15 7 1.9761 4.5788 -5.4593 16 6 0.5398 4.3418 -5.6563 17 6 2.4287 5.7426 -6.2331 18 6 1.7815 6.9901 -5.6892 19 8 1.0187 6.9170 -4.7491 20 7 2.0513 8.1871 -6.2469 21 6 1.4621 9.3220 -5.7524 22 1 0.7822 9.2568 -4.9158 23 6 1.7397 10.5559 -6.3276 24 7 1.1754 11.6439 -5.8533 25 14 2.9151 10.6686 -7.7750 26 1 2.1545 10.5275 -9.0426 27 1 3.6019 11.9850 -7.7537 28 1 3.9235 9.5826 -7.6794 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9997 4.1518 1.3445 35 1 2.7955 3.5258 -3.2717 36 1 2.9852 1.3650 -5.0808 37 1 1.3072 1.9590 -5.0899 38 1 1.4373 2.7932 -7.3959 39 1 2.7927 3.8268 -7.9080 40 1 3.0789 2.1150 -7.5118 41 1 0.2166 3.5191 -5.0186 42 1 -0.0160 5.2427 -5.3963 43 1 0.3533 4.0878 -6.6997 44 1 3.5123 5.8317 -6.1551 45 1 2.1491 5.6145 -7.2789 46 1 2.6616 8.2455 -6.9985 47 1 1.3694 12.5054 -6.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725182312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:54 Heat of formation + Delta-G solvation = -35.853210 kcal Electronic energy + Delta-G solvation = -29661.149454 eV Core-core repulsion = 25460.403618 eV Total energy + Delta-G solvation = -4200.745835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.61069 -39.91755 -38.98823 -37.51476 -35.94317 -34.44707 -33.90531 -33.11726 -31.72903 -31.25362 -29.85682 -28.17007 -26.75668 -25.51220 -24.47951 -23.80992 -23.48630 -21.47752 -20.63227 -20.07324 -19.36192 -18.31900 -18.19597 -17.06377 -16.69494 -16.62993 -16.30690 -15.59990 -15.08228 -15.07659 -14.99090 -14.66663 -14.49064 -14.16365 -14.02875 -13.55310 -13.42752 -13.22526 -13.10127 -12.94399 -12.86500 -12.54658 -12.25169 -12.02761 -11.74330 -11.70949 -11.40044 -11.35222 -11.31325 -11.23591 -11.08104 -11.04591 -10.89432 -10.63473 -10.24930 -10.01735 -9.57910 -9.37365 -8.99268 -8.65194 -8.22679 -8.03718 -6.34996 -3.86610 0.66212 2.24495 2.31166 2.94029 2.98325 3.02682 3.07374 3.11557 3.68828 3.80193 3.84332 4.06255 4.47782 4.53641 4.58604 4.72989 4.88924 5.06810 5.10896 5.15809 5.17467 5.24129 5.30478 5.34965 5.37171 5.42218 5.53066 5.57462 5.63679 5.72583 5.75275 5.77409 5.83521 5.90147 5.90459 6.02135 6.02778 6.12208 6.25388 6.46073 7.04552 7.18632 7.22405 7.46305 7.54137 7.93008 8.10419 8.55903 8.91285 9.38299 9.78956 10.78090 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002609 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.770205 B =10727.972633 C =11968.991587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C 0.079 3.921 4 N -0.495 5.495 5 C 0.204 3.796 6 O -0.184 6.184 7 C -0.111 4.111 8 C 0.607 3.393 9 O -0.523 6.523 10 N -0.700 5.700 11 C 0.130 3.870 12 C 0.063 3.937 13 H 0.090 0.910 14 C -0.186 4.186 15 N -0.512 5.512 16 C 0.015 3.985 17 C 0.042 3.958 18 C 0.452 3.548 19 O -0.559 6.559 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.257 0.743 35 H 0.417 0.583 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.022 0.978 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -20.647 3.507 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 C -0.045 4.045 4 N -0.224 5.224 5 C -0.021 4.021 6 O -0.070 6.070 7 C -0.166 4.166 8 C 0.392 3.608 9 O -0.402 6.402 10 N -0.351 5.351 11 C 0.007 3.993 12 C -0.047 4.047 13 H 0.108 0.892 14 C -0.245 4.245 15 N -0.235 5.235 16 C -0.133 4.133 17 C -0.090 4.090 18 C 0.238 3.762 19 O -0.440 6.440 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.272 0.728 35 H 0.254 0.746 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.040 0.960 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.276 -21.237 5.002 22.447 hybrid contribution 1.136 1.151 -2.492 2.971 sum 6.412 -20.086 2.510 21.234 Atomic orbital electron populations 1.21639 0.93803 1.02177 1.02161 1.20144 0.96672 0.87787 1.04210 1.22049 0.97836 0.98242 0.86410 1.70342 1.17267 1.03369 1.31411 1.28373 0.96810 0.97423 0.79491 1.84556 1.64404 1.33598 1.24396 1.22909 1.12171 0.85226 0.96299 1.16305 0.78204 0.84812 0.81471 1.90842 1.47555 1.19776 1.82020 1.45764 1.66152 1.17481 1.05680 1.21484 1.02294 0.96259 0.79309 1.22061 0.99106 0.90327 0.93159 0.89194 1.22404 1.02895 1.02371 0.96859 1.61812 1.04382 1.01790 1.55550 1.22622 0.88237 1.04006 0.98403 1.21915 1.00516 0.90869 0.95678 1.19626 0.86322 0.83817 0.86464 1.90535 1.38484 1.85701 1.29321 1.42216 1.42633 1.06893 1.31302 1.19412 1.24731 0.82644 1.16509 0.86285 1.25039 0.97843 0.95129 0.98152 1.69620 1.42871 0.98438 1.41173 0.86679 0.81164 0.78523 0.83047 1.19685 1.20170 1.19505 0.92686 0.92306 0.91757 0.88264 0.90202 0.72784 0.74565 0.90695 0.90857 0.91666 0.91664 0.91753 0.91975 0.88524 0.95958 0.89311 0.93002 0.79765 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.05 -0.54 5.93 -27.88 -0.17 -0.71 16 3 C 0.08 0.98 6.41 -82.46 -0.53 0.46 16 4 N -0.49 -5.92 11.26 -10.88 -0.12 -6.04 16 5 C 0.20 1.98 13.21 52.24 0.69 2.67 16 6 O -0.18 -2.21 10.57 4.43 0.05 -2.16 16 7 C -0.11 -1.43 7.18 -36.84 -0.26 -1.70 16 8 C 0.61 8.02 7.79 -12.84 -0.10 7.92 16 9 O -0.52 -7.61 14.79 5.19 0.08 -7.53 16 10 N -0.70 -8.35 5.38 -61.60 -0.33 -8.68 16 11 C 0.13 1.36 4.69 -4.04 -0.02 1.34 16 12 C 0.06 0.64 2.50 -67.71 -0.17 0.47 16 13 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 14 C -0.19 -1.62 8.50 37.16 0.32 -1.30 16 15 N -0.51 -7.10 3.93 -236.33 -0.93 -8.02 16 16 C 0.01 0.22 8.46 60.06 0.51 0.72 16 17 C 0.04 0.63 4.89 -4.97 -0.02 0.60 16 18 C 0.45 9.65 7.47 -10.98 -0.08 9.57 16 19 O -0.56 -14.11 13.91 5.55 0.08 -14.03 16 20 N -0.59 -13.49 5.09 -10.97 -0.06 -13.54 16 21 C -0.30 -8.36 10.16 -14.94 -0.15 -8.51 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.33 13.96 55.50 0.77 -24.55 16 25 Si 0.88 18.89 27.74 -169.99 -4.71 14.17 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 28 H -0.27 -5.23 6.52 56.52 0.37 -4.87 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.11 6.45 -51.93 -0.33 0.78 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.26 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.42 5.18 7.93 -40.82 -0.32 4.86 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.82 6.70 -51.93 -0.35 0.47 16 38 H 0.06 0.60 6.39 -51.93 -0.33 0.27 16 39 H 0.06 0.58 6.75 -51.93 -0.35 0.23 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 42 H 0.10 1.79 5.82 -51.93 -0.30 1.49 16 43 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 44 H 0.09 1.16 8.00 -51.93 -0.42 0.75 16 45 H 0.05 0.70 6.94 -51.93 -0.36 0.34 16 46 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -33.80 384.04 -5.71 -39.50 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.59 Total: 13.61 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 0.28 Total: 11.50 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.66 Total: -60.85 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.20 Total: -23.73 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.80 -5.71 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725182312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.648 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds