Wall clock time and date at job start Tue Mar 31 2020 20:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33693 * 126.27135 * 90.02550 * 3 2 1 5 5 C 1.30611 * 108.99480 * 179.97438 * 4 3 2 6 6 O 1.33668 * 109.15469 * 359.97438 * 5 4 3 7 7 C 1.35338 * 107.68524 * 359.76134 * 6 5 4 8 8 C 1.46715 * 126.64591 * 180.25506 * 7 6 5 9 9 O 1.21693 * 120.00116 * 180.14970 * 8 7 6 10 10 N 1.34779 * 120.00052 * 0.15177 * 8 7 6 11 11 C 1.46501 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46656 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47499 * 64.99868 * 12 11 10 14 14 C 1.53005 * 109.47136 * 184.99830 * 12 11 10 15 15 N 1.46900 * 109.47132 * 304.99164 * 12 11 10 16 16 C 1.46898 * 111.00309 * 298.95771 * 15 12 11 17 17 C 1.46902 * 111.00129 * 174.99907 * 15 12 11 18 18 C 1.50702 * 109.47319 * 190.00253 * 17 15 12 19 19 O 1.21290 * 119.99695 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99775 * 179.97438 * 18 17 15 21 21 C 1.37099 * 119.99812 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99577 * 0.02562 * 21 20 18 23 23 C 1.38939 * 119.99896 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00089 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00358 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47292 * 89.99442 * 25 23 21 27 27 H 1.48497 * 109.47028 * 210.00143 * 25 23 21 28 28 H 1.48500 * 109.46779 * 329.99955 * 25 23 21 29 29 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08002 * 125.42310 * 180.02562 * 5 4 3 35 35 H 0.96996 * 119.99810 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47145 * 299.99222 * 11 10 8 37 37 H 1.08996 * 109.47822 * 59.99842 * 11 10 8 38 38 H 1.09000 * 109.46970 * 59.99191 * 14 12 11 39 39 H 1.08996 * 109.47537 * 179.97438 * 14 12 11 40 40 H 1.09007 * 109.46831 * 299.99940 * 14 12 11 41 41 H 1.09001 * 109.46707 * 60.00258 * 16 15 12 42 42 H 1.09000 * 109.46626 * 179.97438 * 16 15 12 43 43 H 1.08994 * 109.47406 * 299.99883 * 16 15 12 44 44 H 1.09001 * 109.47146 * 310.01004 * 17 15 12 45 45 H 1.09004 * 109.46952 * 70.00279 * 17 15 12 46 46 H 0.96999 * 120.00060 * 0.02562 * 20 18 17 47 47 H 0.96996 * 120.00339 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2965 2.1664 1.0779 5 6 2.7126 3.3421 0.6900 6 8 2.7275 3.3833 -0.6460 7 6 2.3073 2.1793 -1.0992 8 6 2.1707 1.7705 -2.5016 9 8 1.7766 0.6517 -2.7737 10 7 2.4817 2.6340 -3.4886 11 6 2.3447 2.2259 -4.8889 12 6 2.7587 3.3832 -5.8001 13 1 3.8196 3.5921 -5.6630 14 6 2.4982 3.0022 -7.2589 15 7 1.9761 4.5788 -5.4593 16 6 0.5398 4.3418 -5.6563 17 6 2.4287 5.7426 -6.2331 18 6 1.7815 6.9901 -5.6892 19 8 1.0187 6.9170 -4.7491 20 7 2.0513 8.1871 -6.2469 21 6 1.4621 9.3220 -5.7524 22 1 0.7822 9.2568 -4.9158 23 6 1.7397 10.5559 -6.3276 24 7 1.1754 11.6439 -5.8533 25 14 2.9151 10.6686 -7.7750 26 1 2.1545 10.5275 -9.0426 27 1 3.6019 11.9850 -7.7537 28 1 3.9235 9.5826 -7.6794 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9997 4.1518 1.3445 35 1 2.7955 3.5258 -3.2717 36 1 2.9852 1.3650 -5.0808 37 1 1.3072 1.9590 -5.0899 38 1 1.4373 2.7932 -7.3959 39 1 2.7927 3.8268 -7.9080 40 1 3.0789 2.1150 -7.5118 41 1 0.2166 3.5191 -5.0186 42 1 -0.0160 5.2427 -5.3963 43 1 0.3533 4.0878 -6.6997 44 1 3.5123 5.8317 -6.1551 45 1 2.1491 5.6145 -7.2789 46 1 2.6616 8.2455 -6.9985 47 1 1.3694 12.5054 -6.2546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725182312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:52 Heat of formation + Delta-G solvation = -65.450501 kcal Electronic energy + Delta-G solvation = -29662.432889 eV Core-core repulsion = 25460.403618 eV Total energy + Delta-G solvation = -4202.029270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.48955 -40.97912 -40.36936 -38.83122 -36.84428 -36.00517 -35.28387 -33.97930 -33.72522 -32.24335 -30.73134 -29.48476 -27.60510 -27.00035 -25.54998 -24.99571 -24.44704 -22.38007 -21.59981 -21.31163 -20.92526 -20.06211 -19.16572 -18.04657 -17.88288 -17.48184 -17.26189 -16.93118 -16.78689 -16.31112 -15.90315 -15.74921 -15.67859 -15.34576 -14.96597 -14.89146 -14.70082 -14.40971 -14.31766 -14.18539 -13.87437 -13.73204 -13.56679 -13.14103 -12.91051 -12.82058 -12.53197 -12.42135 -12.40031 -12.26413 -12.19908 -12.09981 -11.96894 -11.96428 -11.75949 -11.43554 -11.21224 -10.34499 -10.32684 -10.20405 -9.89207 -9.18325 -8.39165 -5.99513 -0.24424 1.30947 1.36593 1.38077 1.45392 1.45754 1.96567 2.00590 2.17979 2.24473 2.62749 3.09105 3.17605 3.27878 3.61745 3.69451 3.75565 4.02960 4.19189 4.27578 4.30106 4.31955 4.34809 4.38981 4.44791 4.48816 4.55761 4.63149 4.65560 4.73104 4.79153 4.87748 4.97044 5.02916 5.07106 5.19332 5.19583 5.26039 5.32835 5.38711 5.55412 5.90647 6.01789 6.17852 6.28593 6.55222 6.62668 6.92114 6.95672 7.43794 8.01993 8.78606 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002609 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.770205 B =10727.972633 C =11968.991587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 C 0.073 3.927 4 N -0.519 5.519 5 C 0.221 3.779 6 O -0.196 6.196 7 C -0.137 4.137 8 C 0.604 3.396 9 O -0.543 6.543 10 N -0.697 5.697 11 C 0.130 3.870 12 C 0.070 3.930 13 H 0.109 0.891 14 C -0.182 4.182 15 N -0.529 5.529 16 C 0.025 3.975 17 C 0.054 3.946 18 C 0.452 3.548 19 O -0.604 6.604 20 N -0.594 5.594 21 C -0.323 4.323 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.278 1.278 28 H -0.228 1.228 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.302 0.698 35 H 0.415 0.585 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 -22.269 1.465 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C -0.050 4.050 4 N -0.248 5.248 5 C -0.004 4.004 6 O -0.082 6.082 7 C -0.192 4.192 8 C 0.390 3.610 9 O -0.424 6.424 10 N -0.347 5.347 11 C 0.007 3.993 12 C -0.038 4.038 13 H 0.127 0.873 14 C -0.241 4.241 15 N -0.253 5.253 16 C -0.123 4.123 17 C -0.076 4.076 18 C 0.240 3.760 19 O -0.488 6.488 20 N -0.236 5.236 21 C -0.453 4.453 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.203 1.203 28 H -0.151 1.151 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.317 0.683 35 H 0.251 0.749 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.141 0.859 45 H 0.099 0.901 46 H 0.224 0.776 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.115 -22.903 2.949 24.477 hybrid contribution 0.165 1.615 -1.668 2.328 sum 8.280 -21.288 1.281 22.878 Atomic orbital electron populations 1.21596 0.93405 1.03149 1.01069 1.20187 0.96931 0.87131 1.04497 1.22378 0.97187 0.98898 0.86574 1.70370 1.18662 1.04354 1.31432 1.29500 0.94102 0.97720 0.79059 1.84554 1.64762 1.33374 1.25484 1.22912 1.13947 0.85862 0.96448 1.16392 0.78017 0.84723 0.81873 1.90817 1.48630 1.20498 1.82421 1.45803 1.65593 1.17066 1.06192 1.21602 1.02191 0.97027 0.78498 1.22120 0.99222 0.88292 0.94168 0.87335 1.22374 1.02921 1.03556 0.95243 1.61710 1.04148 1.03089 1.56349 1.22396 0.88665 1.01675 0.99571 1.21842 1.01549 0.87668 0.96578 1.20944 0.84771 0.85209 0.85102 1.90532 1.40215 1.86688 1.31385 1.42046 1.43307 1.06044 1.32228 1.18968 1.25190 0.85261 1.15848 0.92760 1.26108 0.99848 0.93794 1.01804 1.69811 1.45078 0.99409 1.43542 0.85377 0.78824 0.79635 0.77758 1.18374 1.20305 1.15131 0.92821 0.94209 0.89783 0.88907 0.88850 0.68324 0.74855 0.89045 0.91795 0.92312 0.91072 0.89625 0.91749 0.93128 0.93967 0.85937 0.90108 0.77581 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.05 -1.06 5.93 29.85 0.18 -0.88 16 3 C 0.07 1.83 6.41 41.84 0.27 2.10 16 4 N -0.52 -12.05 11.26 -303.12 -3.41 -15.47 16 5 C 0.22 4.00 13.21 130.42 1.72 5.72 16 6 O -0.20 -4.62 10.57 -7.06 -0.07 -4.70 16 7 C -0.14 -3.56 7.18 24.04 0.17 -3.39 16 8 C 0.60 16.00 7.79 86.46 0.67 16.67 16 9 O -0.54 -15.87 14.79 -4.33 -0.06 -15.94 16 10 N -0.70 -16.12 5.38 -467.03 -2.51 -18.63 16 11 C 0.13 2.46 4.69 86.38 0.40 2.86 16 12 C 0.07 1.20 2.50 44.92 0.11 1.31 16 13 H 0.11 1.53 8.03 -2.39 -0.02 1.51 16 14 C -0.18 -2.40 8.50 71.98 0.61 -1.79 16 15 N -0.53 -13.61 3.93 -901.61 -3.54 -17.16 16 16 C 0.02 0.71 8.46 127.69 1.08 1.79 16 17 C 0.05 1.48 4.89 85.56 0.42 1.89 16 18 C 0.45 19.17 7.47 87.66 0.66 19.82 16 19 O -0.60 -31.84 13.91 -3.06 -0.04 -31.88 16 20 N -0.59 -26.79 5.09 -306.99 -1.56 -28.35 16 21 C -0.32 -18.49 10.16 84.04 0.85 -17.63 16 22 H 0.05 3.73 7.39 -2.91 -0.02 3.70 16 23 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 24 N -0.94 -56.02 13.96 21.66 0.30 -55.71 16 25 Si 0.96 37.78 27.74 68.60 1.90 39.68 16 26 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.09 6.45 -2.39 -0.02 2.08 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.30 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.41 10.03 7.93 -92.71 -0.74 9.30 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.35 6.70 -2.39 -0.02 1.33 16 38 H 0.06 0.87 6.39 -2.39 -0.02 0.86 16 39 H 0.07 0.89 6.75 -2.39 -0.02 0.88 16 40 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.06 1.78 6.44 -2.39 -0.02 1.76 16 42 H 0.05 1.94 5.82 -2.39 -0.01 1.93 16 43 H 0.04 1.02 6.28 -2.39 -0.02 1.00 16 44 H 0.12 2.59 8.00 -2.39 -0.02 2.57 16 45 H 0.08 1.80 6.94 -2.39 -0.02 1.78 16 46 H 0.39 14.36 5.76 -92.71 -0.53 13.83 16 47 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -81.02 384.04 -0.98 -82.00 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.30 Total: 40.13 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 8.33 Total: 26.02 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -10.73 Total: -135.32 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.18 Total: -52.52 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -81.02 -0.98 -82.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725182312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.546 kcal (2) G-P(sol) polarization free energy of solvation -81.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds