Wall clock time and date at job start Tue Mar 31 2020 21:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21352 * 119.99499 * 0.02562 * 18 17 5 20 20 C 1.49378 * 119.99986 * 179.97438 * 18 17 5 21 21 O 1.21352 * 120.00515 * 0.02562 * 20 18 17 22 22 N 1.34779 * 119.99598 * 180.02562 * 20 18 17 23 23 C 1.39361 * 119.99920 * 180.02562 * 22 20 18 24 24 C 1.42046 * 126.89642 * 0.02562 * 23 22 20 25 25 C 1.35246 * 103.95538 * 179.97438 * 24 23 22 26 26 C 1.50699 * 126.69198 * 179.97438 * 25 24 23 27 27 O 1.34090 * 106.61452 * 0.02562 * 25 24 23 28 28 N 1.20914 * 111.75474 * 359.70394 * 27 25 24 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 32 32 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 34 34 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 35 35 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 36 36 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 37 37 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 0.97001 * 120.00193 * 359.97438 * 22 20 18 44 44 H 1.08001 * 128.02308 * 0.03680 * 24 23 22 45 45 H 1.09000 * 109.46889 * 90.00019 * 26 25 24 46 46 H 1.08996 * 109.47187 * 210.00448 * 26 25 24 47 47 H 1.08998 * 109.47178 * 330.00457 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.3558 6.0853 -1.2500 15 1 9.9653 7.5073 0.6751 16 1 10.3874 5.1393 0.9827 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.7005 4.0749 -0.4351 20 6 2.0812 4.7738 -2.6450 21 8 2.8566 4.8054 -3.5780 22 7 0.8641 5.3410 -2.7607 23 6 0.4959 5.9635 -3.9520 24 6 1.2816 6.0847 -5.1292 25 6 0.4831 6.7609 -5.9860 26 6 0.8177 7.1677 -7.3980 27 8 -0.6639 6.9998 -5.3339 28 7 -0.6441 6.5483 -4.2123 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 6.0357 2.2733 -0.6648 39 1 5.8894 2.4808 1.0970 40 1 5.4810 4.9908 -0.1315 41 1 7.4035 7.7129 -0.2771 42 1 4.3127 3.5646 -1.9981 43 1 0.2442 5.3155 -2.0151 44 1 2.2837 5.7204 -5.3006 45 1 0.5171 6.3766 -8.0849 46 1 0.2865 8.0864 -7.6470 47 1 1.8914 7.3344 -7.4833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725235430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:32 Heat of formation + Delta-G solvation = -3.458332 kcal Electronic energy + Delta-G solvation = -29585.957465 eV Core-core repulsion = 25386.616376 eV Total energy + Delta-G solvation = -4199.341088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.03537 -40.93681 -39.11200 -36.79175 -35.91086 -34.99135 -33.80889 -33.62615 -32.13596 -31.46041 -30.41672 -28.02748 -27.48305 -25.70354 -24.24372 -23.48684 -22.33917 -21.47392 -20.85187 -20.80371 -20.27159 -18.41582 -17.85830 -17.65223 -17.12850 -16.93243 -16.41046 -16.02662 -15.69972 -15.12624 -14.75863 -14.42678 -14.13324 -13.91419 -13.82292 -13.72449 -13.52515 -13.36128 -13.25885 -12.81870 -12.75392 -12.70011 -12.21874 -12.05588 -11.93917 -11.63362 -11.43000 -11.41469 -11.14097 -10.99465 -10.90701 -10.84821 -10.45677 -10.42318 -10.08291 -9.78991 -9.68659 -9.58492 -9.06361 -8.98750 -8.90703 -7.01981 -5.81885 -3.12602 0.99956 1.43496 1.94944 2.24376 2.93976 3.22652 3.39641 3.41471 3.45784 3.47678 4.12727 4.39854 4.51804 4.69482 4.76038 4.86214 4.97708 5.03257 5.08265 5.12937 5.29573 5.33076 5.35483 5.39173 5.51091 5.57165 5.71033 5.74235 5.80589 5.82495 5.88520 5.93090 6.05830 6.13666 6.15359 6.18309 6.27107 6.36301 6.49538 6.54564 6.61683 6.74710 7.30613 7.60461 7.64325 8.02159 8.12467 8.35214 9.47200 10.01168 10.35883 11.40290 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006993 B = 0.003673 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4003.091354 B = 7621.434844 C =11055.446686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.128 4.128 5 C 0.136 3.864 6 H 0.094 0.906 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.246 4.246 10 H 0.072 0.928 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.669 5.669 18 C 0.516 3.484 19 O -0.517 6.517 20 C 0.519 3.481 21 O -0.485 6.485 22 N -0.609 5.609 23 C 0.248 3.752 24 C -0.225 4.225 25 C -0.024 4.024 26 C -0.073 4.073 27 O 0.098 5.902 28 N -0.387 5.387 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.417 0.583 43 H 0.430 0.570 44 H 0.192 0.808 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.197 -7.425 -9.798 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.167 4.167 5 C 0.032 3.968 6 H 0.112 0.888 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.377 4.377 10 H 0.090 0.910 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.207 1.207 17 N -0.321 5.321 18 C 0.295 3.705 19 O -0.394 6.394 20 C 0.300 3.700 21 O -0.356 6.356 22 N -0.262 5.262 23 C -0.001 4.001 24 C -0.248 4.248 25 C -0.088 4.088 26 C -0.130 4.130 27 O 0.037 5.963 28 N -0.102 5.102 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.255 0.745 43 H 0.269 0.731 44 H 0.209 0.791 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.045 -7.274 -9.062 19.811 hybrid contribution 1.576 0.361 -0.081 1.619 sum -14.469 -6.912 -9.143 18.458 Atomic orbital electron populations 1.21748 0.96196 1.00993 1.01836 1.21565 0.95666 0.97496 1.01557 1.21694 0.94770 0.95724 1.02996 1.22006 0.96066 0.95828 1.02799 1.21552 0.96776 0.92701 0.85783 0.88790 1.20988 0.88563 0.89649 0.99209 1.42344 1.05578 1.01863 1.87913 1.19194 0.83559 0.92485 1.42427 0.91042 1.24760 0.97763 0.95646 1.02466 1.69666 1.32982 0.99043 1.56074 0.86180 0.85006 0.77282 0.77619 1.21647 1.21766 1.20721 1.45779 1.14581 1.53763 1.18023 1.19327 0.83843 0.80359 0.86969 1.90783 1.51129 1.58301 1.39137 1.20555 0.80894 0.79058 0.89487 1.90734 1.49822 1.55430 1.39577 1.42091 1.17281 1.53531 1.13329 1.20457 0.91768 0.98504 0.89332 1.22769 1.04014 1.06887 0.91099 1.24443 0.86389 0.99961 0.98016 1.20354 1.03567 1.02866 0.86245 1.84794 1.34590 1.58807 1.18131 1.74064 1.19570 1.18019 0.98541 0.93212 0.92725 0.93032 0.92497 0.92218 0.91252 0.92235 0.91566 0.90492 0.95474 0.94402 0.78074 0.93428 0.74546 0.73096 0.79062 0.89303 0.89729 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.15 0.37 -1.10 16 2 C -0.13 -1.29 5.93 -26.73 -0.16 -1.45 16 3 C -0.11 -1.39 3.82 -26.73 -0.10 -1.50 16 4 C -0.13 -1.57 4.89 -26.73 -0.13 -1.70 16 5 C 0.14 2.08 2.41 -67.93 -0.16 1.92 16 6 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 7 C 0.14 2.64 5.82 -4.04 -0.02 2.61 16 8 N -0.73 -17.64 5.43 -59.91 -0.33 -17.97 16 9 C -0.25 -6.66 9.99 -15.06 -0.15 -6.81 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 13 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 N -0.67 -10.33 4.46 -54.26 -0.24 -10.57 16 18 C 0.52 7.92 6.45 -11.62 -0.07 7.85 16 19 O -0.52 -8.30 13.62 5.50 0.07 -8.22 16 20 C 0.52 7.78 7.85 -11.62 -0.09 7.69 16 21 O -0.49 -7.93 13.75 5.50 0.08 -7.86 16 22 N -0.61 -8.31 5.41 -11.86 -0.06 -8.37 16 23 C 0.25 3.50 8.17 -154.93 -1.27 2.23 16 24 C -0.22 -2.88 9.79 -39.19 -0.38 -3.27 16 25 C -0.02 -0.25 7.48 -35.37 -0.26 -0.52 16 26 C -0.07 -0.42 10.45 36.01 0.38 -0.04 16 27 O 0.10 1.19 11.19 17.05 0.19 1.38 16 28 N -0.39 -5.38 12.10 31.18 0.38 -5.00 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 35 H 0.06 0.79 5.64 -51.93 -0.29 0.50 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 9.98 7.33 -40.82 -0.30 9.68 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.42 6.64 8.07 -40.82 -0.33 6.32 16 43 H 0.43 5.25 8.29 -40.82 -0.34 4.91 16 44 H 0.19 2.52 6.22 -52.49 -0.33 2.20 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -31.90 393.19 -7.46 -39.35 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -7.01 Total: 15.85 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -2.16 Total: 5.53 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: 0.47 Total: -69.03 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.34 Total: -14.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.90 -7.46 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725235430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.893 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds