Wall clock time and date at job start Tue Mar 31 2020 21:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21352 * 119.99499 * 0.02562 * 18 17 5 20 20 C 1.49378 * 119.99986 * 179.97438 * 18 17 5 21 21 O 1.21352 * 120.00515 * 0.02562 * 20 18 17 22 22 N 1.34779 * 119.99598 * 180.02562 * 20 18 17 23 23 C 1.39361 * 119.99920 * 180.02562 * 22 20 18 24 24 C 1.42046 * 126.89642 * 0.02562 * 23 22 20 25 25 C 1.35246 * 103.95538 * 179.97438 * 24 23 22 26 26 C 1.50699 * 126.69198 * 179.97438 * 25 24 23 27 27 O 1.34090 * 106.61452 * 0.02562 * 25 24 23 28 28 N 1.20914 * 111.75474 * 359.70394 * 27 25 24 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 31 31 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 32 32 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 33 33 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 34 34 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 35 35 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 36 36 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 37 37 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 0.97001 * 120.00193 * 359.97438 * 22 20 18 44 44 H 1.08001 * 128.02308 * 0.03680 * 24 23 22 45 45 H 1.09000 * 109.46889 * 90.00019 * 26 25 24 46 46 H 1.08996 * 109.47187 * 210.00448 * 26 25 24 47 47 H 1.08998 * 109.47178 * 330.00457 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.3558 6.0853 -1.2500 15 1 9.9653 7.5073 0.6751 16 1 10.3874 5.1393 0.9827 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.7005 4.0749 -0.4351 20 6 2.0812 4.7738 -2.6450 21 8 2.8566 4.8054 -3.5780 22 7 0.8641 5.3410 -2.7607 23 6 0.4959 5.9635 -3.9520 24 6 1.2816 6.0847 -5.1292 25 6 0.4831 6.7609 -5.9860 26 6 0.8177 7.1677 -7.3980 27 8 -0.6639 6.9998 -5.3339 28 7 -0.6441 6.5483 -4.2123 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 6.0357 2.2733 -0.6648 39 1 5.8894 2.4808 1.0970 40 1 5.4810 4.9908 -0.1315 41 1 7.4035 7.7129 -0.2771 42 1 4.3127 3.5646 -1.9981 43 1 0.2442 5.3155 -2.0151 44 1 2.2837 5.7204 -5.3006 45 1 0.5171 6.3766 -8.0849 46 1 0.2865 8.0864 -7.6470 47 1 1.8914 7.3344 -7.4833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725235430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:31 Heat of formation + Delta-G solvation = -24.784600 kcal Electronic energy + Delta-G solvation = -29586.882241 eV Core-core repulsion = 25386.616376 eV Total energy + Delta-G solvation = -4200.265864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.03849 -42.15854 -40.33563 -38.09824 -37.04119 -36.27593 -35.17410 -34.62424 -33.19737 -33.08279 -31.78779 -28.86597 -28.71416 -26.98926 -25.81405 -24.54003 -23.77581 -22.56993 -21.97445 -21.83409 -21.49894 -19.72235 -19.01649 -18.86436 -18.68211 -18.02834 -17.54800 -17.22604 -16.95071 -16.61490 -16.08313 -15.66431 -15.53921 -15.15534 -15.08735 -14.82566 -14.46349 -14.42122 -14.20381 -13.98373 -13.85290 -13.58260 -13.42065 -13.18519 -13.06066 -12.89820 -12.83025 -12.80537 -12.55149 -12.31960 -12.13018 -12.01742 -11.87120 -11.85023 -11.46451 -11.36818 -11.00180 -10.89713 -10.49182 -10.20123 -10.09870 -9.01986 -7.94900 -5.24502 -0.15473 0.47994 0.79117 1.16480 1.48578 1.49694 1.58038 2.00477 2.07085 2.27637 2.55989 3.09859 3.27264 3.40521 3.58747 3.72296 3.95062 3.97706 4.06167 4.22394 4.28599 4.29686 4.32482 4.53371 4.57518 4.60599 4.75250 4.79006 4.82791 4.90118 4.91854 4.98862 5.04509 5.05768 5.12513 5.19693 5.24739 5.28206 5.32583 5.45050 5.51249 5.56581 5.58701 6.10253 6.25559 6.39213 6.76205 7.15414 7.33178 8.06361 8.28617 9.28173 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006993 B = 0.003673 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4003.091354 B = 7621.434844 C =11055.446686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.119 4.119 5 C 0.145 3.855 6 H 0.076 0.924 7 C 0.143 3.857 8 N -0.745 5.745 9 C -0.243 4.243 10 H 0.082 0.918 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.287 1.287 15 H -0.300 1.300 16 H -0.267 1.267 17 N -0.669 5.669 18 C 0.518 3.482 19 O -0.525 6.525 20 C 0.521 3.479 21 O -0.502 6.502 22 N -0.602 5.602 23 C 0.228 3.772 24 C -0.253 4.253 25 C 0.000 4.000 26 C -0.073 4.073 27 O 0.100 5.900 28 N -0.403 5.403 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.415 0.585 43 H 0.435 0.565 44 H 0.186 0.814 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 -8.775 -10.722 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.094 0.906 7 C 0.017 3.983 8 N -0.388 5.388 9 C -0.375 4.375 10 H 0.099 0.901 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.214 1.214 15 H -0.227 1.227 16 H -0.192 1.192 17 N -0.321 5.321 18 C 0.297 3.703 19 O -0.403 6.403 20 C 0.302 3.698 21 O -0.374 6.374 22 N -0.255 5.255 23 C -0.020 4.020 24 C -0.276 4.276 25 C -0.063 4.063 26 C -0.130 4.130 27 O 0.039 5.961 28 N -0.118 5.118 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.205 0.795 41 H 0.058 0.942 42 H 0.252 0.748 43 H 0.274 0.726 44 H 0.203 0.797 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.972 -8.681 -9.969 20.732 hybrid contribution 1.477 0.749 0.156 1.663 sum -14.495 -7.933 -9.813 19.218 Atomic orbital electron populations 1.21749 0.95902 1.01816 1.01325 1.21537 0.95935 0.96013 1.02412 1.21608 0.94602 0.96916 1.01570 1.21957 0.96046 0.93545 1.04191 1.21440 0.94754 0.94530 0.85144 0.90568 1.21169 0.90430 0.86860 0.99864 1.42539 1.04604 1.03834 1.87843 1.19642 0.85065 0.92644 1.40116 0.90059 1.25554 1.01792 0.95746 1.03537 1.69832 1.34731 0.99033 1.58410 0.85156 0.80335 0.76742 0.77602 1.21437 1.22689 1.19205 1.45771 1.14553 1.53858 1.17921 1.19358 0.83732 0.80150 0.87015 1.90776 1.51375 1.58633 1.39471 1.20430 0.81148 0.79089 0.89088 1.90724 1.50379 1.56293 1.39963 1.41975 1.16865 1.52989 1.13627 1.20719 0.92420 0.99173 0.89725 1.22813 1.04353 1.08902 0.91562 1.25180 0.84720 0.97373 0.99069 1.20653 1.04520 1.04458 0.83378 1.84764 1.35257 1.58385 1.17715 1.74057 1.19701 1.18557 0.99479 0.91714 0.93116 0.93719 0.91785 0.91135 0.92722 0.93678 0.90356 0.88794 0.94083 0.93462 0.79534 0.94220 0.74789 0.72555 0.79715 0.87056 0.87713 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.12 -2.28 5.93 30.59 0.18 -2.10 16 3 C -0.11 -2.56 3.82 30.60 0.12 -2.45 16 4 C -0.12 -2.72 4.89 30.60 0.15 -2.57 16 5 C 0.15 4.38 2.41 44.99 0.11 4.49 16 6 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 7 C 0.14 5.10 5.82 86.38 0.50 5.60 16 8 N -0.75 -35.92 5.43 -343.46 -1.87 -37.78 16 9 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 10 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 11 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 12 N -0.97 -59.20 13.06 21.65 0.28 -58.91 16 13 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 N -0.67 -20.85 4.46 -443.95 -1.98 -22.83 16 18 C 0.52 16.29 6.45 87.25 0.56 16.85 16 19 O -0.53 -17.24 13.62 -3.25 -0.04 -17.29 16 20 C 0.52 16.11 7.85 87.25 0.68 16.80 16 21 O -0.50 -16.90 13.75 -3.25 -0.04 -16.94 16 22 N -0.60 -16.94 5.41 -310.82 -1.68 -18.63 16 23 C 0.23 6.53 8.17 134.15 1.10 7.63 16 24 C -0.25 -6.51 9.79 22.52 0.22 -6.29 16 25 C 0.00 0.01 7.48 25.00 0.19 0.19 16 26 C -0.07 -0.65 10.45 71.24 0.74 0.10 16 27 O 0.10 2.34 11.19 71.17 0.80 3.14 16 28 N -0.40 -11.21 12.10 -56.35 -0.68 -11.89 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.44 7.85 -2.39 -0.02 1.42 16 35 H 0.04 1.19 5.64 -2.39 -0.01 1.17 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.37 19.69 7.33 -92.71 -0.68 19.01 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.42 13.38 8.07 -92.70 -0.75 12.63 16 43 H 0.43 11.03 8.29 -92.71 -0.77 10.26 16 44 H 0.19 4.99 6.22 -2.91 -0.02 4.97 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -69.07 393.19 2.21 -66.86 By element: Atomic # 1 Polarization: 47.59 SS G_CDS: -1.17 Total: 46.42 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.57 Total: 20.30 kcal Atomic # 7 Polarization: -144.12 SS G_CDS: -5.93 Total: -150.05 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: 0.71 Total: -31.09 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -69.07 2.21 -66.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725235430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.076 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds