Wall clock time and date at job start Tue Mar 31 2020 20:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47289 * 2 1 4 4 N 1.29939 * 125.37773 * 90.27293 * 3 2 1 5 5 C 1.36072 * 108.47459 * 180.18631 * 4 3 2 6 6 C 1.47417 * 126.44733 * 179.85743 * 5 4 3 7 7 O 1.21613 * 119.99925 * 179.69165 * 6 5 4 8 8 N 1.34777 * 120.00113 * 359.69684 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27547 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53003 * 109.47301 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47167 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99866 * 66.04813 * 12 11 10 14 14 C 1.46901 * 111.00081 * 189.99972 * 12 11 10 15 15 C 1.50697 * 109.47149 * 170.00260 * 14 12 11 16 16 O 1.21292 * 119.99933 * 0.02562 * 15 14 12 17 17 N 1.34776 * 120.00129 * 179.97438 * 15 14 12 18 18 C 1.37091 * 120.00482 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99623 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00330 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00174 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00157 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47039 * 89.99990 * 22 20 18 24 24 H 1.48496 * 109.47180 * 210.00634 * 22 20 18 25 25 H 1.48498 * 109.46940 * 330.00147 * 22 20 18 26 26 C 1.36091 * 107.10222 * 359.60371 * 5 4 3 27 27 O 1.34050 * 125.37795 * 270.02198 * 3 2 1 28 28 H 1.09005 * 109.46627 * 60.00161 * 1 2 3 29 29 H 1.08999 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47381 * 300.00350 * 1 2 3 31 31 H 1.08999 * 109.47381 * 239.99650 * 2 1 3 32 32 H 1.08998 * 109.46913 * 119.99536 * 2 1 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 35 35 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 36 36 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 37 37 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 38 38 H 1.08990 * 109.47021 * 299.99845 * 11 10 9 39 39 H 1.09002 * 109.46620 * 60.00037 * 11 10 9 40 40 H 1.08999 * 109.46948 * 59.99306 * 13 12 11 41 41 H 1.08997 * 109.47246 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.46706 * 300.00118 * 13 12 11 43 43 H 1.08996 * 109.46994 * 290.00603 * 14 12 11 44 44 H 1.09000 * 109.46860 * 49.99794 * 14 12 11 45 45 H 0.97003 * 119.99511 * 0.02562 * 17 15 14 46 46 H 0.96996 * 120.00187 * 179.97438 * 21 20 18 47 47 H 1.07999 * 126.52716 * 180.27437 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1284 1.0594 5 6 2.7161 3.3579 0.6638 6 6 3.1102 4.4730 1.5438 7 8 3.4822 5.5257 1.0618 8 7 3.0582 4.3259 2.8825 9 6 3.4441 5.4361 3.7569 10 6 3.2883 5.0119 5.2186 11 6 3.6918 6.1712 6.1320 12 7 3.5416 5.7641 7.5354 13 6 4.4942 4.7001 7.8797 14 6 3.6899 6.9151 8.4362 15 6 3.2905 6.5145 9.8330 16 8 2.9193 5.3815 10.0562 17 7 3.3466 7.4148 10.8343 18 6 2.9828 7.0506 12.1049 19 1 2.6515 6.0421 12.3035 20 6 3.0412 7.9787 13.1373 21 7 3.4448 9.2058 12.8957 22 14 2.5461 7.4822 14.8688 23 1 3.7351 6.9693 15.5957 24 1 1.9992 8.6625 15.5849 25 1 1.5105 6.4201 14.8020 26 6 2.7177 3.3624 -0.6971 27 8 2.2906 2.1527 -1.0930 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.7612 3.4863 3.2669 34 1 4.4828 5.7053 3.5655 35 1 2.8035 6.2952 3.5577 36 1 2.2495 4.7428 5.4101 37 1 3.9288 4.1529 5.4180 38 1 4.7306 6.4400 5.9404 39 1 3.0515 7.0305 5.9327 40 1 5.5117 5.0599 7.7271 41 1 4.3618 4.4179 8.9242 42 1 4.3161 3.8333 7.2434 43 1 4.7286 7.2453 8.4359 44 1 3.0500 7.7286 8.0945 45 1 3.6438 8.3208 10.6558 46 1 3.4852 9.8538 13.6164 47 1 3.0078 4.1827 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731235423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:33 Heat of formation + Delta-G solvation = -52.505019 kcal Electronic energy + Delta-G solvation = -27584.360225 eV Core-core repulsion = 23382.892313 eV Total energy + Delta-G solvation = -4201.467912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.90277 -39.80864 -38.64807 -36.93171 -35.54008 -35.21421 -34.44840 -33.83619 -31.63239 -31.19296 -29.97217 -27.87124 -26.73532 -25.11136 -24.85816 -24.07522 -22.58202 -21.59689 -21.15218 -20.43810 -19.13340 -18.49097 -17.81151 -17.31938 -16.87050 -16.47956 -16.07570 -15.83641 -15.37899 -15.11435 -15.09505 -14.83759 -14.61262 -14.27787 -14.14650 -13.85501 -13.62267 -13.39513 -13.30376 -13.26638 -12.36968 -12.35415 -12.11774 -11.87658 -11.81123 -11.71585 -11.66208 -11.46342 -11.29796 -11.23293 -11.21930 -10.90434 -10.71049 -10.51330 -10.37666 -10.19939 -9.55797 -9.45861 -9.28128 -8.42979 -7.95702 -7.82877 -6.39778 -3.80527 0.66713 1.54519 2.08256 2.75549 2.95595 3.19053 3.27604 3.33527 3.36135 3.92879 4.00559 4.25793 4.26149 4.31358 4.52914 4.54378 4.74955 4.83989 4.95020 5.07361 5.09910 5.11362 5.11846 5.20870 5.27274 5.34914 5.41841 5.48256 5.54329 5.60761 5.65531 5.72856 5.76295 5.94931 5.99671 6.02201 6.09402 6.17852 6.31128 6.58392 6.93355 7.25157 7.29536 7.41726 7.57059 7.83535 8.08596 8.64209 9.20243 9.56856 10.08889 10.78007 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.001481 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.008570 B =18897.129891 C =19754.620383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C 0.201 3.799 4 N -0.460 5.460 5 C -0.072 4.072 6 C 0.601 3.399 7 O -0.538 6.538 8 N -0.709 5.709 9 C 0.120 3.880 10 C -0.128 4.128 11 C 0.058 3.942 12 N -0.519 5.519 13 C 0.020 3.980 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.012 3.988 27 O -0.196 6.196 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.013 0.987 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -13.605 -28.765 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.009 4.009 4 N -0.190 5.190 5 C -0.192 4.192 6 C 0.386 3.614 7 O -0.415 6.415 8 N -0.360 5.360 9 C -0.004 4.004 10 C -0.166 4.166 11 C -0.070 4.070 12 N -0.243 5.243 13 C -0.128 4.128 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.062 4.062 27 O -0.082 6.082 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.032 0.968 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.632 -13.843 -28.111 31.377 hybrid contribution 0.803 0.784 0.171 1.135 sum -0.829 -13.059 -27.940 30.852 Atomic orbital electron populations 1.21803 0.92750 1.03318 1.03147 1.20156 0.97114 0.83750 1.05586 1.26408 0.99231 0.96995 0.78221 1.70771 1.15735 1.02511 1.29965 1.21797 1.09984 0.94316 0.93090 1.16720 0.77621 0.85074 0.81948 1.90839 1.47995 1.27255 1.75459 1.45803 1.66857 1.18016 1.05299 1.21420 1.00991 0.89053 0.88930 1.21779 1.03753 0.99372 0.91702 1.21998 0.99482 0.97188 0.88379 1.61544 1.52473 1.09466 1.00785 1.22580 0.91528 0.94085 1.04591 1.21863 1.00119 0.93193 0.93384 1.19744 0.84969 0.86642 0.85674 1.90480 1.51782 1.20301 1.83626 1.41869 1.58432 1.12356 1.07506 1.19697 1.41005 0.98691 0.83426 0.87921 1.25255 0.97441 0.94986 1.00275 1.69613 1.47408 1.03456 1.33884 0.85859 0.78871 0.77986 0.81575 1.20463 1.20949 1.19428 1.25309 0.98581 0.86570 0.95695 1.84402 1.63294 1.22523 1.37959 0.92100 0.90605 0.91516 0.88608 0.87227 0.75352 0.91179 0.90917 0.90037 0.90988 0.94845 0.90550 0.96806 0.88628 0.92073 0.93457 0.89368 0.77494 0.91905 0.75248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.15 0.37 -0.15 16 2 C -0.03 -0.11 6.56 -27.89 -0.18 -0.29 16 3 C 0.20 1.51 7.56 -13.08 -0.10 1.41 16 4 N -0.46 -4.43 11.06 -7.65 -0.08 -4.51 16 5 C -0.07 -0.73 6.99 -83.02 -0.58 -1.31 16 6 C 0.60 7.02 7.81 -12.52 -0.10 6.92 16 7 O -0.54 -7.60 16.89 5.27 0.09 -7.52 16 8 N -0.71 -7.28 5.55 -61.39 -0.34 -7.62 16 9 C 0.12 1.21 5.67 -4.04 -0.02 1.18 16 10 C -0.13 -1.35 5.25 -26.73 -0.14 -1.49 16 11 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 12 N -0.52 -8.60 4.50 -244.37 -1.10 -9.70 16 13 C 0.02 0.32 8.96 60.07 0.54 0.86 16 14 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 15 C 0.44 10.53 7.47 -10.99 -0.08 10.45 16 16 O -0.58 -15.56 13.91 5.55 0.08 -15.48 16 17 N -0.56 -14.38 5.29 -10.97 -0.06 -14.44 16 18 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.01 0.10 11.95 29.96 0.36 0.46 16 27 O -0.20 -1.50 10.73 6.51 0.07 -1.43 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.41 3.80 8.20 -40.82 -0.33 3.46 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 38 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 42 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 45 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.23 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -34.48 399.41 -6.90 -41.37 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.04 Total: 9.58 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -0.23 Total: 11.54 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.86 Total: -60.18 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.24 Total: -24.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.48 -6.90 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731235423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.132 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds