Wall clock time and date at job start Tue Mar 31 2020 20:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47289 * 2 1 4 4 N 1.29939 * 125.37773 * 90.27293 * 3 2 1 5 5 C 1.36072 * 108.47459 * 180.18631 * 4 3 2 6 6 C 1.47417 * 126.44733 * 179.85743 * 5 4 3 7 7 O 1.21613 * 119.99925 * 179.69165 * 6 5 4 8 8 N 1.34777 * 120.00113 * 359.69684 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27547 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.53003 * 109.47301 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47167 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99866 * 66.04813 * 12 11 10 14 14 C 1.46901 * 111.00081 * 189.99972 * 12 11 10 15 15 C 1.50697 * 109.47149 * 170.00260 * 14 12 11 16 16 O 1.21292 * 119.99933 * 0.02562 * 15 14 12 17 17 N 1.34776 * 120.00129 * 179.97438 * 15 14 12 18 18 C 1.37091 * 120.00482 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99623 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00330 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00174 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00157 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47039 * 89.99990 * 22 20 18 24 24 H 1.48496 * 109.47180 * 210.00634 * 22 20 18 25 25 H 1.48498 * 109.46940 * 330.00147 * 22 20 18 26 26 C 1.36091 * 107.10222 * 359.60371 * 5 4 3 27 27 O 1.34050 * 125.37795 * 270.02198 * 3 2 1 28 28 H 1.09005 * 109.46627 * 60.00161 * 1 2 3 29 29 H 1.08999 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47381 * 300.00350 * 1 2 3 31 31 H 1.08999 * 109.47381 * 239.99650 * 2 1 3 32 32 H 1.08998 * 109.46913 * 119.99536 * 2 1 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 35 35 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 36 36 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 37 37 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 38 38 H 1.08990 * 109.47021 * 299.99845 * 11 10 9 39 39 H 1.09002 * 109.46620 * 60.00037 * 11 10 9 40 40 H 1.08999 * 109.46948 * 59.99306 * 13 12 11 41 41 H 1.08997 * 109.47246 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.46706 * 300.00118 * 13 12 11 43 43 H 1.08996 * 109.46994 * 290.00603 * 14 12 11 44 44 H 1.09000 * 109.46860 * 49.99794 * 14 12 11 45 45 H 0.97003 * 119.99511 * 0.02562 * 17 15 14 46 46 H 0.96996 * 120.00187 * 179.97438 * 21 20 18 47 47 H 1.07999 * 126.52716 * 180.27437 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1284 1.0594 5 6 2.7161 3.3579 0.6638 6 6 3.1102 4.4730 1.5438 7 8 3.4822 5.5257 1.0618 8 7 3.0582 4.3259 2.8825 9 6 3.4441 5.4361 3.7569 10 6 3.2883 5.0119 5.2186 11 6 3.6918 6.1712 6.1320 12 7 3.5416 5.7641 7.5354 13 6 4.4942 4.7001 7.8797 14 6 3.6899 6.9151 8.4362 15 6 3.2905 6.5145 9.8330 16 8 2.9193 5.3815 10.0562 17 7 3.3466 7.4148 10.8343 18 6 2.9828 7.0506 12.1049 19 1 2.6515 6.0421 12.3035 20 6 3.0412 7.9787 13.1373 21 7 3.4448 9.2058 12.8957 22 14 2.5461 7.4822 14.8688 23 1 3.7351 6.9693 15.5957 24 1 1.9992 8.6625 15.5849 25 1 1.5105 6.4201 14.8020 26 6 2.7177 3.3624 -0.6971 27 8 2.2906 2.1527 -1.0930 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.7612 3.4863 3.2669 34 1 4.4828 5.7053 3.5655 35 1 2.8035 6.2952 3.5577 36 1 2.2495 4.7428 5.4101 37 1 3.9288 4.1529 5.4180 38 1 4.7306 6.4400 5.9404 39 1 3.0515 7.0305 5.9327 40 1 5.5117 5.0599 7.7271 41 1 4.3618 4.4179 8.9242 42 1 4.3161 3.8333 7.2434 43 1 4.7286 7.2453 8.4359 44 1 3.0500 7.7286 8.0945 45 1 3.6438 8.3208 10.6558 46 1 3.4852 9.8538 13.6164 47 1 3.0078 4.1827 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731235423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:32 Heat of formation + Delta-G solvation = -81.274154 kcal Electronic energy + Delta-G solvation = -27585.607748 eV Core-core repulsion = 23382.892313 eV Total energy + Delta-G solvation = -4202.715435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.51066 -40.70516 -40.34449 -38.28564 -36.36703 -36.07826 -35.76898 -34.86874 -33.27742 -32.59487 -30.56101 -29.36807 -27.78891 -26.70418 -25.44709 -25.06161 -23.60771 -22.22480 -22.08806 -21.27257 -20.96058 -19.84245 -19.20625 -17.94061 -17.85125 -17.50970 -17.14647 -16.96866 -16.56257 -16.45702 -16.19393 -15.77366 -15.68061 -15.49494 -15.24397 -15.03723 -14.80722 -14.68669 -14.39736 -13.74193 -13.59017 -13.47472 -13.39991 -13.02372 -12.86124 -12.72534 -12.63832 -12.51674 -12.39619 -12.38289 -12.32954 -12.11355 -12.05251 -11.94575 -11.66935 -11.44861 -11.42066 -10.32352 -10.26345 -10.00436 -9.98416 -9.18760 -8.45132 -5.93718 0.01583 0.89018 1.38677 1.42226 1.53475 1.55069 1.97580 2.07428 2.15131 2.29846 2.75330 2.85592 3.21786 3.44078 3.63976 3.73608 3.94752 4.02716 4.12802 4.20513 4.25128 4.32330 4.35809 4.40585 4.49232 4.55680 4.55820 4.59843 4.61010 4.65269 4.74423 4.79001 4.98773 5.03120 5.04154 5.07656 5.17148 5.24741 5.33737 5.35044 5.42506 5.89842 6.08568 6.21505 6.25022 6.52579 6.62633 6.99365 7.14748 7.58523 8.14584 8.72285 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.001481 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.008570 B =18897.129891 C =19754.620383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C 0.203 3.797 4 N -0.484 5.484 5 C -0.103 4.103 6 C 0.599 3.401 7 O -0.569 6.569 8 N -0.704 5.704 9 C 0.127 3.873 10 C -0.115 4.115 11 C 0.059 3.941 12 N -0.538 5.538 13 C 0.025 3.975 14 C 0.057 3.943 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.026 3.974 27 O -0.195 6.195 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.415 0.585 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -14.104 -30.112 33.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.006 4.006 4 N -0.214 5.214 5 C -0.221 4.221 6 C 0.386 3.614 7 O -0.449 6.449 8 N -0.354 5.354 9 C 0.003 3.997 10 C -0.153 4.153 11 C -0.069 4.069 12 N -0.263 5.263 13 C -0.123 4.123 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.048 4.048 27 O -0.081 6.081 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.527 -14.341 -29.462 32.802 hybrid contribution 0.757 0.867 0.505 1.257 sum -0.770 -13.473 -28.957 31.947 Atomic orbital electron populations 1.21789 0.92429 1.04306 1.02193 1.20412 0.97214 0.81768 1.07145 1.27189 0.97893 0.97875 0.77683 1.70739 1.16919 1.02671 1.31057 1.21733 1.12108 0.94491 0.93807 1.16934 0.77073 0.85101 0.82303 1.90810 1.49652 1.28487 1.75983 1.45784 1.66341 1.18222 1.05101 1.21325 1.01003 0.88905 0.88470 1.21626 1.03332 0.98831 0.91509 1.22073 1.00726 0.98131 0.85932 1.61497 1.53118 1.09109 1.02559 1.22459 0.92375 0.95033 1.02437 1.21743 1.01491 0.94223 0.89955 1.20797 0.83145 0.85724 0.87492 1.90459 1.52951 1.21875 1.84737 1.41941 1.59118 1.12853 1.07379 1.19661 1.43038 0.98236 0.85283 0.90311 1.26027 0.96843 0.94828 1.03593 1.69674 1.47372 1.04008 1.35163 0.84928 0.78551 0.77856 0.76996 1.19652 1.19588 1.19828 1.25787 0.96753 0.86953 0.95317 1.84438 1.63188 1.22452 1.38021 0.92322 0.88648 0.93170 0.86228 0.86440 0.74805 0.91043 0.91123 0.90723 0.90608 0.93357 0.89558 0.95309 0.92762 0.90018 0.91497 0.87209 0.77055 0.91357 0.72878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 71.98 0.71 -0.08 16 2 C -0.03 -0.16 6.56 29.85 0.20 0.04 16 3 C 0.20 2.81 7.56 88.39 0.67 3.48 16 4 N -0.48 -9.04 11.06 -293.03 -3.24 -12.28 16 5 C -0.10 -2.03 6.99 40.41 0.28 -1.75 16 6 C 0.60 13.82 7.81 86.66 0.68 14.49 16 7 O -0.57 -15.95 16.89 -4.07 -0.07 -16.02 16 8 N -0.70 -14.01 5.55 -466.38 -2.59 -16.60 16 9 C 0.13 2.39 5.67 86.38 0.49 2.88 16 10 C -0.11 -2.23 5.25 30.59 0.16 -2.07 16 11 C 0.06 1.34 4.96 86.30 0.43 1.77 16 12 N -0.54 -17.12 4.50 -927.05 -4.17 -21.29 16 13 C 0.02 0.78 8.96 127.69 1.14 1.93 16 14 C 0.06 1.98 5.45 85.56 0.47 2.45 16 15 C 0.44 21.16 7.47 87.66 0.66 21.82 16 16 O -0.61 -34.03 13.91 -3.07 -0.04 -34.07 16 17 N -0.58 -29.81 5.29 -307.00 -1.62 -31.43 16 18 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 21 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 22 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.03 0.38 11.95 67.32 0.80 1.19 16 27 O -0.20 -2.71 10.73 0.37 0.00 -2.70 16 28 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.42 7.46 8.20 -92.71 -0.76 6.70 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.08 1.43 6.55 -2.39 -0.02 1.41 16 38 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 39 H 0.09 1.80 7.93 -2.39 -0.02 1.78 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 2.18 5.82 -2.39 -0.01 2.17 16 42 H 0.08 2.18 6.47 -2.39 -0.02 2.17 16 43 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 44 H 0.11 3.36 7.93 -2.39 -0.02 3.34 16 45 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 46 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.26 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -75.65 399.41 -1.94 -77.59 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.48 Total: 33.63 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 7.97 Total: 27.66 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -11.34 Total: -131.36 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.11 Total: -52.79 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.65 -1.94 -77.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731235423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.681 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds