Wall clock time and date at job start Tue Mar 31 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47380 * 2 1 4 4 N 1.46504 * 109.47593 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99866 * 275.31368 * 4 3 2 6 6 H 1.07996 * 120.00415 * 37.57055 * 5 4 3 7 7 C 1.38811 * 119.99367 * 217.57711 * 5 4 3 8 8 N 1.31617 * 120.00527 * 21.42010 * 7 5 4 9 9 Si 1.86809 * 119.99855 * 201.42431 * 7 5 4 10 10 H 1.48497 * 109.47190 * 89.99599 * 9 7 5 11 11 H 1.48493 * 109.47202 * 210.00060 * 9 7 5 12 12 H 1.48506 * 109.46973 * 329.99860 * 9 7 5 13 13 C 1.46497 * 119.99660 * 95.30330 * 4 3 2 14 14 C 1.53000 * 109.47667 * 270.00159 * 13 4 3 15 15 N 1.46495 * 109.47392 * 180.02562 * 14 13 4 16 16 C 1.34775 * 120.00024 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00065 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47055 * 180.02562 * 18 16 15 20 20 C 1.38224 * 120.76260 * 269.97284 * 19 18 16 21 21 C 1.50704 * 120.37956 * 0.04583 * 20 19 18 22 22 N 1.32460 * 119.24498 * 180.02562 * 20 19 18 23 23 C 1.32320 * 120.90096 * 0.02562 * 22 20 19 24 24 O 1.35458 * 119.16057 * 180.02562 * 23 22 20 25 25 N 1.32279 * 121.67343 * 359.71805 * 23 22 20 26 26 C 1.32784 * 120.65826 * 0.57225 * 25 23 22 27 27 O 1.35511 * 120.47356 * 179.71647 * 26 25 23 28 28 H 1.08994 * 109.46997 * 60.00258 * 1 2 3 29 29 H 1.08999 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47156 * 299.99847 * 1 2 3 31 31 H 1.08998 * 109.47204 * 239.99638 * 2 1 3 32 32 H 1.09005 * 109.47229 * 120.00114 * 2 1 3 33 33 H 1.08998 * 109.47247 * 59.99665 * 3 2 1 34 34 H 1.09005 * 109.47033 * 300.00235 * 3 2 1 35 35 H 0.96997 * 120.00171 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46756 * 150.00232 * 13 4 3 37 37 H 1.08999 * 109.47241 * 30.00604 * 13 4 3 38 38 H 1.08999 * 109.46738 * 60.00063 * 14 13 4 39 39 H 1.08999 * 109.47153 * 300.00499 * 14 13 4 40 40 H 0.97004 * 120.00133 * 359.97438 * 15 14 13 41 41 H 1.08994 * 109.47216 * 59.99440 * 18 16 15 42 42 H 1.08999 * 109.46978 * 299.99919 * 18 16 15 43 43 H 1.09008 * 109.46825 * 89.99681 * 21 20 19 44 44 H 1.08996 * 109.47123 * 209.99568 * 21 20 19 45 45 H 1.08994 * 109.46902 * 330.00271 * 21 20 19 46 46 H 0.96696 * 113.99687 * 90.00237 * 24 23 22 47 47 H 0.96695 * 114.00195 * 269.71797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3612 2.0514 1.3741 8 7 5.6020 3.1239 0.6502 9 14 6.5969 1.4960 2.6603 10 1 7.5670 0.5571 2.0419 11 1 7.3219 2.6774 3.1928 12 1 5.8837 0.8119 3.7689 13 6 4.2380 1.5596 -1.2624 14 6 4.4933 0.1641 -1.8353 15 7 5.2268 0.2812 -3.0980 16 6 5.5636 -0.8270 -3.7870 17 8 5.2600 -1.9213 -3.3614 18 6 6.3187 -0.7066 -5.0857 19 6 6.5689 -2.0811 -5.6506 20 6 7.7145 -2.7821 -5.3237 21 6 8.7358 -2.1815 -4.3924 22 7 7.9042 -3.9879 -5.8380 23 6 7.0144 -4.5252 -6.6568 24 8 7.2438 -5.7609 -7.1619 25 7 5.9037 -3.8886 -6.9898 26 6 5.6513 -2.6741 -6.5161 27 8 4.5149 -2.0231 -6.8643 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 6.4208 3.6262 0.7849 36 1 5.1904 2.0593 -1.0848 37 1 3.6492 2.1414 -1.9716 38 1 3.5410 -0.3355 -2.0129 39 1 5.0821 -0.4177 -1.1262 40 1 5.4693 1.1565 -3.4387 41 1 7.2712 -0.2077 -4.9072 42 1 5.7308 -0.1241 -5.7950 43 1 8.4963 -2.4558 -3.3649 44 1 9.7262 -2.5582 -4.6476 45 1 8.7233 -1.0961 -4.4909 46 1 6.8925 -6.4794 -6.6184 47 1 4.6028 -1.4741 -7.6554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731869728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:29 Heat of formation + Delta-G solvation = -51.877697 kcal Electronic energy + Delta-G solvation = -29581.839380 eV Core-core repulsion = 25380.398671 eV Total energy + Delta-G solvation = -4201.440709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70679 -39.38831 -38.39715 -37.30912 -36.52162 -34.45020 -34.23384 -32.96044 -32.85845 -30.87685 -29.69638 -28.49386 -26.99356 -25.59663 -23.93956 -23.25889 -22.81867 -20.98762 -20.44636 -19.99203 -19.54736 -18.84016 -18.28401 -17.21067 -16.50412 -16.01511 -15.90345 -15.54518 -15.29926 -14.85059 -14.51096 -14.32781 -14.16311 -13.90432 -13.80870 -13.34663 -13.16970 -13.00114 -12.82797 -12.72749 -12.70889 -12.60772 -12.01708 -11.84528 -11.60750 -11.51518 -11.21901 -11.09882 -10.96829 -10.79315 -10.59798 -10.46633 -10.39314 -10.12424 -9.92164 -9.87413 -9.67316 -9.50917 -9.22969 -8.62788 -8.49504 -6.66886 -5.88403 -3.47178 0.44120 0.68538 2.60895 2.85849 3.04333 3.31253 3.39182 3.40098 3.41924 3.61291 3.99321 4.33345 4.42104 4.48694 4.66531 4.93744 5.02699 5.13816 5.21721 5.23315 5.40163 5.44853 5.55467 5.58704 5.65000 5.74325 5.94438 5.99851 6.08318 6.18305 6.25721 6.39906 6.49589 6.51170 6.59960 6.63514 6.81939 6.94906 6.97160 7.04349 7.14400 7.15544 7.48440 7.72105 7.76056 7.84912 8.42928 8.51187 9.09995 9.71606 10.29574 11.11550 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.002852 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.344029 B = 9813.969760 C =11099.828138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.718 5.718 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.092 4.092 19 C -0.189 4.189 20 C 0.224 3.776 21 C -0.113 4.113 22 N -0.529 5.529 23 C 0.517 3.483 24 O -0.458 6.458 25 N -0.553 5.553 26 C 0.397 3.603 27 O -0.466 6.466 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.398 0.602 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.413 0.587 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -6.027 -15.378 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.010 3.990 14 C -0.028 4.028 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.419 6.419 18 C -0.133 4.133 19 C -0.196 4.196 20 C 0.079 3.921 21 C -0.170 4.170 22 N -0.257 5.257 23 C 0.212 3.788 24 O -0.261 6.261 25 N -0.289 5.289 26 C 0.210 3.790 27 O -0.273 6.273 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.273 0.727 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.718 -7.585 -15.378 17.360 hybrid contribution 0.383 0.613 0.600 0.939 sum 3.100 -6.972 -14.778 16.632 Atomic orbital electron populations 1.21720 0.97322 1.00422 1.01000 1.22183 0.93838 1.00927 1.01556 1.20940 0.85030 0.92964 0.98930 1.43608 0.99450 1.84793 1.02088 1.19037 1.05640 1.20374 0.93939 0.92066 1.25172 1.00813 0.94521 0.98118 1.69993 1.25646 1.14751 1.42561 0.86393 0.81631 0.77878 0.81529 1.21227 1.21681 1.20158 1.21059 1.00312 0.91157 0.86437 1.22475 0.94845 1.02790 0.82651 1.46098 1.57879 1.08282 1.24644 1.20219 0.79993 0.84905 0.85270 1.90711 1.54733 1.26722 1.69700 1.20491 1.02864 0.93535 0.96458 1.20975 0.95840 0.99428 1.03322 1.21281 0.92795 0.87231 0.90826 1.20936 0.96984 1.00868 0.98235 1.67848 1.33631 1.13067 1.11127 1.19784 0.83930 0.88121 0.86981 1.84693 1.79881 1.11790 1.49777 1.67362 1.21282 1.10805 1.29449 1.18831 0.83944 0.86441 0.89815 1.84812 1.29845 1.62908 1.49703 0.93453 0.93815 0.93195 0.92964 0.92384 0.93565 0.94740 0.93517 0.88370 0.95320 0.93033 0.91812 0.76899 0.87103 0.87495 0.88610 0.89400 0.89467 0.72748 0.73432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.01 5.72 -4.04 -0.02 2.98 16 4 N -0.58 -13.61 2.43 -173.24 -0.42 -14.03 16 5 C -0.26 -6.79 9.45 -15.06 -0.14 -6.94 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -23.88 11.47 55.49 0.64 -23.25 16 9 Si 0.90 20.82 29.61 -169.99 -5.03 15.79 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.14 2.91 5.45 -4.04 -0.02 2.89 16 14 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 15 N -0.72 -10.80 5.56 -60.30 -0.33 -11.14 16 16 C 0.51 7.69 7.82 -10.98 -0.09 7.61 16 17 O -0.54 -10.73 16.03 5.56 0.09 -10.64 16 18 C -0.09 -0.91 5.28 -29.03 -0.15 -1.07 16 19 C -0.19 -2.27 4.42 -104.20 -0.46 -2.73 16 20 C 0.22 2.73 6.82 -82.32 -0.56 2.17 16 21 C -0.11 -1.07 9.83 36.01 0.35 -0.71 16 22 N -0.53 -7.12 10.40 -11.01 -0.11 -7.24 16 23 C 0.52 6.92 8.71 -91.28 -0.80 6.12 16 24 O -0.46 -4.99 13.64 -18.07 -0.25 -5.23 16 25 N -0.55 -7.73 10.49 -14.79 -0.16 -7.89 16 26 C 0.40 5.08 7.80 -16.71 -0.13 4.95 16 27 O -0.47 -4.97 12.74 -18.23 -0.23 -5.20 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.98 6.64 -51.93 -0.34 0.64 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.10 2.32 5.52 -51.92 -0.29 2.04 16 37 H 0.03 0.56 7.86 -51.93 -0.41 0.16 16 38 H 0.05 1.05 6.64 -51.93 -0.34 0.70 16 39 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.40 4.77 8.47 -40.82 -0.35 4.42 16 41 H 0.11 0.78 6.07 -51.93 -0.32 0.47 16 42 H 0.11 0.76 7.62 -51.93 -0.40 0.36 16 43 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.62 6.06 -51.93 -0.31 0.31 16 46 H 0.41 2.44 9.06 45.56 0.41 2.85 16 47 H 0.41 1.83 9.06 45.56 0.41 2.24 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -35.86 394.23 -7.07 -42.93 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.27 Total: 7.14 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -1.93 Total: 12.81 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: -0.39 Total: -63.54 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.39 Total: -21.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.86 -7.07 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.947 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds