Wall clock time and date at job start Tue Mar 31 2020 21:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47380 * 2 1 4 4 N 1.46504 * 109.47593 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99866 * 275.31368 * 4 3 2 6 6 H 1.07996 * 120.00415 * 37.57055 * 5 4 3 7 7 C 1.38811 * 119.99367 * 217.57711 * 5 4 3 8 8 N 1.31617 * 120.00527 * 21.42010 * 7 5 4 9 9 Si 1.86809 * 119.99855 * 201.42431 * 7 5 4 10 10 H 1.48497 * 109.47190 * 89.99599 * 9 7 5 11 11 H 1.48493 * 109.47202 * 210.00060 * 9 7 5 12 12 H 1.48506 * 109.46973 * 329.99860 * 9 7 5 13 13 C 1.46497 * 119.99660 * 95.30330 * 4 3 2 14 14 C 1.53000 * 109.47667 * 270.00159 * 13 4 3 15 15 N 1.46495 * 109.47392 * 180.02562 * 14 13 4 16 16 C 1.34775 * 120.00024 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00065 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47055 * 180.02562 * 18 16 15 20 20 C 1.38224 * 120.76260 * 269.97284 * 19 18 16 21 21 C 1.50704 * 120.37956 * 0.04583 * 20 19 18 22 22 N 1.32460 * 119.24498 * 180.02562 * 20 19 18 23 23 C 1.32320 * 120.90096 * 0.02562 * 22 20 19 24 24 O 1.35458 * 119.16057 * 180.02562 * 23 22 20 25 25 N 1.32279 * 121.67343 * 359.71805 * 23 22 20 26 26 C 1.32784 * 120.65826 * 0.57225 * 25 23 22 27 27 O 1.35511 * 120.47356 * 179.71647 * 26 25 23 28 28 H 1.08994 * 109.46997 * 60.00258 * 1 2 3 29 29 H 1.08999 * 109.47086 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47156 * 299.99847 * 1 2 3 31 31 H 1.08998 * 109.47204 * 239.99638 * 2 1 3 32 32 H 1.09005 * 109.47229 * 120.00114 * 2 1 3 33 33 H 1.08998 * 109.47247 * 59.99665 * 3 2 1 34 34 H 1.09005 * 109.47033 * 300.00235 * 3 2 1 35 35 H 0.96997 * 120.00171 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.46756 * 150.00232 * 13 4 3 37 37 H 1.08999 * 109.47241 * 30.00604 * 13 4 3 38 38 H 1.08999 * 109.46738 * 60.00063 * 14 13 4 39 39 H 1.08999 * 109.47153 * 300.00499 * 14 13 4 40 40 H 0.97004 * 120.00133 * 359.97438 * 15 14 13 41 41 H 1.08994 * 109.47216 * 59.99440 * 18 16 15 42 42 H 1.08999 * 109.46978 * 299.99919 * 18 16 15 43 43 H 1.09008 * 109.46825 * 89.99681 * 21 20 19 44 44 H 1.08996 * 109.47123 * 209.99568 * 21 20 19 45 45 H 1.08994 * 109.46902 * 330.00271 * 21 20 19 46 46 H 0.96696 * 113.99687 * 90.00237 * 24 23 22 47 47 H 0.96695 * 114.00195 * 269.71797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3612 2.0514 1.3741 8 7 5.6020 3.1239 0.6502 9 14 6.5969 1.4960 2.6603 10 1 7.5670 0.5571 2.0419 11 1 7.3219 2.6774 3.1928 12 1 5.8837 0.8119 3.7689 13 6 4.2380 1.5596 -1.2624 14 6 4.4933 0.1641 -1.8353 15 7 5.2268 0.2812 -3.0980 16 6 5.5636 -0.8270 -3.7870 17 8 5.2600 -1.9213 -3.3614 18 6 6.3187 -0.7066 -5.0857 19 6 6.5689 -2.0811 -5.6506 20 6 7.7145 -2.7821 -5.3237 21 6 8.7358 -2.1815 -4.3924 22 7 7.9042 -3.9879 -5.8380 23 6 7.0144 -4.5252 -6.6568 24 8 7.2438 -5.7609 -7.1619 25 7 5.9037 -3.8886 -6.9898 26 6 5.6513 -2.6741 -6.5161 27 8 4.5149 -2.0231 -6.8643 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 6.4208 3.6262 0.7849 36 1 5.1904 2.0593 -1.0848 37 1 3.6492 2.1414 -1.9716 38 1 3.5410 -0.3355 -2.0129 39 1 5.0821 -0.4177 -1.1262 40 1 5.4693 1.1565 -3.4387 41 1 7.2712 -0.2077 -4.9072 42 1 5.7308 -0.1241 -5.7950 43 1 8.4963 -2.4558 -3.3649 44 1 9.7262 -2.5582 -4.6476 45 1 8.7233 -1.0961 -4.4909 46 1 6.8925 -6.4794 -6.6184 47 1 4.6028 -1.4741 -7.6554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731869728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:28 Heat of formation + Delta-G solvation = -85.541917 kcal Electronic energy + Delta-G solvation = -29583.299170 eV Core-core repulsion = 25380.398671 eV Total energy + Delta-G solvation = -4202.900499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61132 -40.61561 -39.27342 -38.27354 -38.09264 -35.71396 -35.30039 -34.59843 -33.84226 -32.59874 -30.70172 -29.75045 -28.07338 -27.33389 -25.28689 -24.34970 -23.83794 -22.55936 -21.93293 -21.38631 -20.40941 -19.72901 -19.13338 -18.76415 -17.94927 -17.16215 -16.95541 -16.91742 -16.48898 -16.32570 -15.93497 -15.73941 -15.31449 -15.05492 -14.78672 -14.66988 -14.51450 -14.36161 -14.23397 -13.75285 -13.56679 -13.46681 -13.32918 -13.09215 -12.91459 -12.85929 -12.63891 -12.58940 -12.51654 -12.21538 -12.02059 -11.95514 -11.87489 -11.64529 -11.52204 -11.33829 -11.04629 -10.52027 -10.44946 -10.18813 -9.97874 -8.57303 -7.84344 -5.47214 -0.46101 -0.20927 1.45144 1.49189 1.55897 1.69430 1.76178 2.13370 2.39518 2.52148 2.59054 3.15993 3.22822 3.46437 3.68318 3.73986 3.87811 4.04801 4.18370 4.22621 4.35368 4.38873 4.42056 4.53785 4.56910 4.67997 4.68264 4.75791 4.81472 4.83670 4.87371 4.99583 5.16807 5.22826 5.24281 5.27400 5.42948 5.47159 5.61874 5.63886 5.68188 5.77684 6.41112 6.46140 6.46743 6.67012 6.80161 7.16721 7.34488 7.84182 8.36390 9.11278 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.002852 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.344029 B = 9813.969760 C =11099.828138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.271 4.271 6 H 0.048 0.952 7 C -0.024 4.024 8 N -0.907 5.907 9 Si 0.949 3.051 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.146 3.854 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.511 3.489 17 O -0.593 6.593 18 C -0.080 4.080 19 C -0.197 4.197 20 C 0.213 3.787 21 C -0.113 4.113 22 N -0.548 5.548 23 C 0.509 3.491 24 O -0.463 6.463 25 N -0.577 5.577 26 C 0.392 3.608 27 O -0.474 6.474 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.027 0.973 40 H 0.416 0.584 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.431 0.569 47 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -5.231 -16.643 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.402 4.402 6 H 0.065 0.935 7 C -0.222 4.222 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.019 3.981 14 C -0.006 4.006 15 N -0.362 5.362 16 C 0.298 3.702 17 O -0.474 6.474 18 C -0.120 4.120 19 C -0.203 4.203 20 C 0.069 3.931 21 C -0.169 4.169 22 N -0.276 5.276 23 C 0.204 3.796 24 O -0.269 6.269 25 N -0.314 5.314 26 C 0.205 3.795 27 O -0.285 6.285 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.252 0.748 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.132 0.868 46 H 0.294 0.706 47 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 2.791 -6.761 -16.680 18.214 hybrid contribution 0.294 0.335 0.951 1.051 sum 3.085 -6.426 -15.729 17.269 Atomic orbital electron populations 1.21655 0.94308 1.01692 1.02055 1.22012 0.96390 0.98953 1.00076 1.21035 0.83527 0.94314 0.99077 1.43847 1.00782 1.85070 1.02133 1.19119 1.06333 1.19977 0.94738 0.93476 1.25694 1.01939 0.94676 0.99918 1.70068 1.25930 1.15338 1.43710 0.85580 0.79700 0.77323 0.79694 1.21308 1.21440 1.20142 1.20943 0.99277 0.91893 0.86022 1.21864 0.94131 1.00779 0.83807 1.45896 1.57420 1.09650 1.23193 1.21078 0.79118 0.83650 0.86341 1.90699 1.56737 1.28666 1.71268 1.20551 1.04353 0.93291 0.93812 1.21142 0.95612 1.00326 1.03237 1.21793 0.93591 0.86973 0.90718 1.21038 0.96789 1.02454 0.96647 1.67910 1.33979 1.13893 1.11793 1.19998 0.83931 0.88742 0.86914 1.84645 1.80103 1.11771 1.50395 1.67402 1.21847 1.11699 1.30482 1.19084 0.84266 0.86331 0.89789 1.84762 1.29164 1.63224 1.51365 0.91995 0.92467 0.92541 0.93800 0.94495 0.94716 0.93122 0.93570 0.90500 0.93648 0.94089 0.95470 0.74763 0.83536 0.83805 0.89986 0.88308 0.86783 0.70616 0.70516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.85 6.23 30.59 0.19 -4.66 16 3 C 0.15 5.90 5.72 86.38 0.49 6.39 16 4 N -0.60 -28.27 2.43 -702.00 -1.71 -29.97 16 5 C -0.27 -14.40 9.45 84.03 0.79 -13.60 16 6 H 0.05 2.58 7.92 -2.91 -0.02 2.56 16 7 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 8 N -0.91 -48.84 11.47 21.65 0.25 -48.60 16 9 Si 0.95 43.06 29.61 68.60 2.03 45.09 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.15 6.12 5.45 86.38 0.47 6.59 16 14 C 0.12 4.68 6.00 86.38 0.52 5.20 16 15 N -0.71 -20.25 5.56 -463.07 -2.57 -22.83 16 16 C 0.51 14.52 7.82 87.66 0.69 15.21 16 17 O -0.59 -23.43 16.03 -3.03 -0.05 -23.48 16 18 C -0.08 -1.32 5.28 29.10 0.15 -1.17 16 19 C -0.20 -4.35 4.42 -19.59 -0.09 -4.43 16 20 C 0.21 4.96 6.82 42.46 0.29 5.25 16 21 C -0.11 -1.92 9.83 71.24 0.70 -1.22 16 22 N -0.55 -14.46 10.40 -301.70 -3.14 -17.60 16 23 C 0.51 13.48 8.71 180.58 1.57 15.05 16 24 O -0.46 -9.95 13.64 -87.56 -1.19 -11.14 16 25 N -0.58 -15.83 10.49 -426.37 -4.47 -20.30 16 26 C 0.39 9.50 7.80 84.82 0.66 10.16 16 27 O -0.47 -9.17 12.74 -88.13 -1.12 -10.29 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.64 6.64 -2.39 -0.02 1.63 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.05 1.86 7.83 -2.38 -0.02 1.84 16 35 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 36 H 0.08 3.63 5.52 -2.38 -0.01 3.61 16 37 H 0.05 1.73 7.86 -2.39 -0.02 1.71 16 38 H 0.04 1.67 6.64 -2.39 -0.02 1.66 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.42 8.89 8.47 -92.71 -0.79 8.10 16 41 H 0.15 1.40 6.07 -2.39 -0.01 1.39 16 42 H 0.14 1.36 7.62 -2.39 -0.02 1.35 16 43 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 1.25 6.06 -2.39 -0.01 1.24 16 46 H 0.43 5.01 9.06 -74.06 -0.67 4.33 16 47 H 0.43 2.76 9.06 -74.06 -0.67 2.09 16 Total: -1.00 -79.47 394.23 -5.48 -84.95 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -1.09 Total: 19.40 kcal Atomic # 6 Polarization: 27.19 SS G_CDS: 7.58 Total: 34.77 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -11.64 Total: -139.30 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -2.37 Total: -44.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -79.47 -5.48 -84.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.594 kcal (2) G-P(sol) polarization free energy of solvation -79.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds