Wall clock time and date at job start Tue Mar 31 2020 21:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46856 * 2 1 4 4 H 1.09000 * 109.47006 * 55.37334 * 3 2 1 5 5 C 1.53004 * 109.47112 * 175.37368 * 3 2 1 6 6 N 1.46501 * 109.46994 * 174.99792 * 5 3 2 7 7 C 1.34777 * 119.99702 * 180.02562 * 6 5 3 8 8 O 1.21683 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.46720 * 119.99642 * 180.02562 * 7 6 5 10 10 O 1.35339 * 126.64802 * 359.68571 * 9 7 6 11 11 C 1.33663 * 107.68802 * 179.87598 * 10 9 7 12 12 C 1.50697 * 125.42436 * 180.14603 * 11 10 9 13 13 N 1.30616 * 109.15380 * 0.39440 * 11 10 9 14 14 C 1.33697 * 108.99490 * 359.75578 * 13 11 10 15 15 C 1.50702 * 126.27414 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.46859 * 295.37139 * 3 2 1 17 17 C 1.46892 * 111.00364 * 302.88757 * 16 3 2 18 18 C 1.50699 * 109.47554 * 185.63843 * 17 16 3 19 19 O 1.21293 * 119.99809 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00525 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00222 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00297 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00240 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99435 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46924 * 59.99967 * 25 23 21 27 27 H 1.48502 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47058 * 300.00123 * 25 23 21 29 29 H 1.09002 * 109.47142 * 58.73980 * 1 2 3 30 30 H 1.09005 * 109.47088 * 178.72867 * 1 2 3 31 31 H 1.08997 * 109.47767 * 298.72962 * 1 2 3 32 32 H 1.08995 * 109.47487 * 239.99682 * 2 1 3 33 33 H 1.09002 * 109.46810 * 119.99497 * 2 1 3 34 34 H 1.08996 * 109.46937 * 294.99741 * 5 3 2 35 35 H 1.08996 * 109.47208 * 54.99781 * 5 3 2 36 36 H 0.97000 * 119.99999 * 0.02562 * 6 5 3 37 37 H 1.08996 * 109.47403 * 270.31199 * 12 11 10 38 38 H 1.09002 * 109.47151 * 30.31336 * 12 11 10 39 39 H 1.09000 * 109.47374 * 150.31165 * 12 11 10 40 40 H 1.09004 * 109.46630 * 269.96986 * 15 14 13 41 41 H 1.08995 * 109.46961 * 29.96615 * 15 14 13 42 42 H 1.08993 * 109.47184 * 149.97128 * 15 14 13 43 43 H 1.00900 * 111.00181 * 66.84808 * 16 3 2 44 44 H 1.09003 * 109.47527 * 305.63590 * 17 16 3 45 45 H 1.09001 * 109.47606 * 65.63732 * 17 16 3 46 46 H 0.97000 * 119.99794 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6104 1.9797 0.8456 5 6 3.5655 1.4442 0.1164 6 7 4.0629 2.8169 -0.0036 7 6 5.3861 3.0629 0.0687 8 8 6.1675 2.1449 0.2340 9 6 5.8842 4.4378 -0.0508 10 8 5.1408 5.5527 -0.2408 11 6 5.9767 6.5945 -0.2914 12 6 5.5698 8.0321 -0.4875 13 7 7.2028 6.1674 -0.1491 14 6 7.1862 4.8391 0.0021 15 6 8.3864 3.9487 0.1961 16 7 1.6436 2.1019 -1.2514 17 6 2.1483 1.3650 -2.4176 18 6 1.8430 2.1409 -3.6729 19 8 1.2616 3.2032 -3.6029 20 7 2.2158 1.6546 -4.8733 21 6 1.9376 2.3602 -6.0152 22 1 1.4192 3.3057 -5.9530 23 6 2.3225 1.8591 -7.2528 24 7 2.9528 0.7085 -7.3285 25 14 1.9428 2.8203 -8.8089 26 1 2.5982 4.1510 -8.7410 27 1 2.4538 2.0757 -9.9877 28 1 0.4738 2.9979 -8.9349 29 1 -0.3633 0.5333 -0.8785 30 1 -0.3633 -1.0275 -0.0228 31 1 -0.3634 0.4939 0.9011 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8565 1.0355 1.0840 35 1 3.9912 0.8327 -0.6792 36 1 3.4400 3.5488 -0.1349 37 1 5.5487 8.2618 -1.5527 38 1 4.5789 8.1906 -0.0619 39 1 6.2875 8.6841 0.0105 40 1 8.7533 3.6167 -0.7751 41 1 9.1710 4.5035 0.7106 42 1 8.1031 3.0819 0.7931 43 1 0.6419 2.2135 -1.2999 44 1 3.2263 1.2330 -2.3253 45 1 1.6657 0.3889 -2.4674 46 1 2.6804 0.8050 -4.9293 47 1 3.2212 0.3585 -8.1924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732195969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:19 Heat of formation + Delta-G solvation = -57.763426 kcal Electronic energy + Delta-G solvation = -29675.535350 eV Core-core repulsion = 25473.839416 eV Total energy + Delta-G solvation = -4201.695934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.51238 -39.76134 -38.61209 -37.31892 -35.50655 -34.16016 -33.88175 -32.90037 -31.80649 -31.17805 -29.51535 -29.22854 -27.37380 -26.40053 -24.30086 -23.62009 -22.10820 -21.70915 -20.66603 -20.25460 -19.18246 -18.11925 -17.86817 -17.15665 -16.83980 -16.11983 -15.89583 -15.56045 -15.06010 -14.82030 -14.43199 -14.36195 -14.25516 -14.09031 -13.86553 -13.53703 -13.46327 -13.25800 -13.15207 -13.10902 -12.85534 -12.63192 -12.33851 -12.25043 -11.96425 -11.80704 -11.51881 -11.41827 -11.08137 -11.07250 -10.95850 -10.90150 -10.83710 -10.45225 -10.22044 -10.17155 -9.50510 -9.22774 -8.77714 -8.53750 -8.11052 -7.96804 -6.42116 -3.83072 0.74465 2.28191 2.31387 3.04003 3.14029 3.19085 3.25016 3.29085 3.75611 3.89813 4.07380 4.30254 4.54930 4.60317 4.63826 4.83456 4.93734 5.04205 5.11444 5.12882 5.20023 5.22300 5.25316 5.38230 5.46824 5.49211 5.54033 5.55100 5.59698 5.69603 5.76816 5.78213 5.83644 5.87046 5.93598 6.04033 6.15197 6.20048 6.24714 6.34680 7.09693 7.33156 7.53133 7.54164 7.57583 8.03977 8.05106 8.60512 9.17157 9.53687 10.05079 10.75535 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.003518 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.697793 B = 7957.088080 C =10125.582299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.126 3.874 6 N -0.699 5.699 7 C 0.608 3.392 8 O -0.524 6.524 9 C -0.116 4.116 10 O -0.183 6.183 11 C 0.221 3.779 12 C -0.062 4.062 13 N -0.493 5.493 14 C 0.079 3.921 15 C -0.080 4.080 16 N -0.659 5.659 17 C 0.044 3.956 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.416 0.584 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 4.037 18.090 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.002 3.998 6 N -0.350 5.350 7 C 0.393 3.607 8 O -0.402 6.402 9 C -0.172 4.172 10 O -0.070 6.070 11 C 0.016 3.984 12 C -0.119 4.119 13 N -0.224 5.224 14 C -0.045 4.045 15 C -0.137 4.137 16 N -0.292 5.292 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.174 0.826 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.183 4.835 18.060 19.158 hybrid contribution -1.369 -0.987 -1.121 2.026 sum 2.814 3.848 16.939 17.597 Atomic orbital electron populations 1.21756 0.95202 1.02049 1.02038 1.22206 0.96831 0.97767 1.03169 1.21923 0.93998 0.93747 0.94140 0.89152 1.21504 0.93248 0.82869 1.02156 1.45699 1.06518 1.10888 1.71860 1.16288 0.82892 0.84090 0.77396 1.90838 1.56044 1.42405 1.50960 1.22855 0.91243 0.87132 1.15922 1.84476 1.38985 1.15235 1.68287 1.26546 0.83148 0.92159 0.96583 1.20391 1.03780 0.82777 1.04999 1.70338 1.21575 1.10432 1.20011 1.22047 0.94482 0.90267 0.97699 1.20377 0.92325 0.97332 1.03623 1.60182 1.19591 1.49894 0.99540 1.21762 1.01119 0.95354 0.90642 1.19788 0.85337 0.87943 0.84273 1.90515 1.46002 1.23703 1.86515 1.41853 1.51510 1.21793 1.04828 1.19636 1.35311 1.04845 0.83212 0.88028 1.25257 0.96805 0.96389 0.99412 1.69606 1.39487 1.18655 1.26489 0.85930 0.78861 0.79274 0.80226 1.19909 1.20945 1.19912 0.92422 0.92431 0.92554 0.90909 0.91236 0.90794 0.90896 0.74736 0.88199 0.88825 0.87836 0.89938 0.90629 0.88692 0.82620 0.89636 0.93315 0.77537 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.70 37.16 0.36 -1.05 16 2 C -0.16 -1.51 5.10 -26.73 -0.14 -1.65 16 3 C 0.07 0.77 2.70 -67.71 -0.18 0.59 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.13 1.48 4.76 -4.04 -0.02 1.46 16 6 N -0.70 -9.35 5.38 -61.61 -0.33 -9.69 16 7 C 0.61 9.20 7.79 -12.83 -0.10 9.10 16 8 O -0.52 -8.68 14.79 5.20 0.08 -8.60 16 9 C -0.12 -1.75 7.18 -36.84 -0.26 -2.01 16 10 O -0.18 -2.60 10.57 4.44 0.05 -2.55 16 11 C 0.22 2.75 8.32 -12.80 -0.11 2.64 16 12 C -0.06 -0.45 10.51 36.00 0.38 -0.07 16 13 N -0.49 -6.96 11.26 -7.07 -0.08 -7.04 16 14 C 0.08 1.15 7.16 -82.46 -0.59 0.56 16 15 C -0.08 -0.96 9.87 36.01 0.36 -0.60 16 16 N -0.66 -9.39 5.32 -108.00 -0.57 -9.96 16 17 C 0.04 0.74 5.31 -4.98 -0.03 0.71 16 18 C 0.44 10.23 7.83 -10.98 -0.09 10.15 16 19 O -0.58 -15.44 15.90 5.55 0.09 -15.35 16 20 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 21 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.61 6.87 -51.93 -0.36 0.25 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.77 6.23 -51.93 -0.32 0.44 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.96 6.61 -51.93 -0.34 0.61 16 36 H 0.42 5.59 7.93 -40.82 -0.32 5.27 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.17 6.47 -51.93 -0.34 0.83 16 43 H 0.35 5.13 7.29 -39.29 -0.29 4.85 16 44 H 0.09 1.43 6.22 -51.93 -0.32 1.11 16 45 H 0.05 0.75 6.48 -51.93 -0.34 0.41 16 46 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 47 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -33.76 392.73 -6.56 -40.32 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -6.69 Total: 17.30 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -0.66 Total: 11.82 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.32 Total: -64.98 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: 0.21 Total: -26.50 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.76 -6.56 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732195969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.443 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds