Wall clock time and date at job start Tue Mar 31 2020 21:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46856 * 2 1 4 4 H 1.09000 * 109.47006 * 55.37334 * 3 2 1 5 5 C 1.53004 * 109.47112 * 175.37368 * 3 2 1 6 6 N 1.46501 * 109.46994 * 174.99792 * 5 3 2 7 7 C 1.34777 * 119.99702 * 180.02562 * 6 5 3 8 8 O 1.21683 * 120.00133 * 359.97438 * 7 6 5 9 9 C 1.46720 * 119.99642 * 180.02562 * 7 6 5 10 10 O 1.35339 * 126.64802 * 359.68571 * 9 7 6 11 11 C 1.33663 * 107.68802 * 179.87598 * 10 9 7 12 12 C 1.50697 * 125.42436 * 180.14603 * 11 10 9 13 13 N 1.30616 * 109.15380 * 0.39440 * 11 10 9 14 14 C 1.33697 * 108.99490 * 359.75578 * 13 11 10 15 15 C 1.50702 * 126.27414 * 180.02562 * 14 13 11 16 16 N 1.46897 * 109.46859 * 295.37139 * 3 2 1 17 17 C 1.46892 * 111.00364 * 302.88757 * 16 3 2 18 18 C 1.50699 * 109.47554 * 185.63843 * 17 16 3 19 19 O 1.21293 * 119.99809 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00525 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00222 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00297 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00240 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99435 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46924 * 59.99967 * 25 23 21 27 27 H 1.48502 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47058 * 300.00123 * 25 23 21 29 29 H 1.09002 * 109.47142 * 58.73980 * 1 2 3 30 30 H 1.09005 * 109.47088 * 178.72867 * 1 2 3 31 31 H 1.08997 * 109.47767 * 298.72962 * 1 2 3 32 32 H 1.08995 * 109.47487 * 239.99682 * 2 1 3 33 33 H 1.09002 * 109.46810 * 119.99497 * 2 1 3 34 34 H 1.08996 * 109.46937 * 294.99741 * 5 3 2 35 35 H 1.08996 * 109.47208 * 54.99781 * 5 3 2 36 36 H 0.97000 * 119.99999 * 0.02562 * 6 5 3 37 37 H 1.08996 * 109.47403 * 270.31199 * 12 11 10 38 38 H 1.09002 * 109.47151 * 30.31336 * 12 11 10 39 39 H 1.09000 * 109.47374 * 150.31165 * 12 11 10 40 40 H 1.09004 * 109.46630 * 269.96986 * 15 14 13 41 41 H 1.08995 * 109.46961 * 29.96615 * 15 14 13 42 42 H 1.08993 * 109.47184 * 149.97128 * 15 14 13 43 43 H 1.00900 * 111.00181 * 66.84808 * 16 3 2 44 44 H 1.09003 * 109.47527 * 305.63590 * 17 16 3 45 45 H 1.09001 * 109.47606 * 65.63732 * 17 16 3 46 46 H 0.97000 * 119.99794 * 0.02562 * 20 18 17 47 47 H 0.97000 * 119.99448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6104 1.9797 0.8456 5 6 3.5655 1.4442 0.1164 6 7 4.0629 2.8169 -0.0036 7 6 5.3861 3.0629 0.0687 8 8 6.1675 2.1449 0.2340 9 6 5.8842 4.4378 -0.0508 10 8 5.1408 5.5527 -0.2408 11 6 5.9767 6.5945 -0.2914 12 6 5.5698 8.0321 -0.4875 13 7 7.2028 6.1674 -0.1491 14 6 7.1862 4.8391 0.0021 15 6 8.3864 3.9487 0.1961 16 7 1.6436 2.1019 -1.2514 17 6 2.1483 1.3650 -2.4176 18 6 1.8430 2.1409 -3.6729 19 8 1.2616 3.2032 -3.6029 20 7 2.2158 1.6546 -4.8733 21 6 1.9376 2.3602 -6.0152 22 1 1.4192 3.3057 -5.9530 23 6 2.3225 1.8591 -7.2528 24 7 2.9528 0.7085 -7.3285 25 14 1.9428 2.8203 -8.8089 26 1 2.5982 4.1510 -8.7410 27 1 2.4538 2.0757 -9.9877 28 1 0.4738 2.9979 -8.9349 29 1 -0.3633 0.5333 -0.8785 30 1 -0.3633 -1.0275 -0.0228 31 1 -0.3634 0.4939 0.9011 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8565 1.0355 1.0840 35 1 3.9912 0.8327 -0.6792 36 1 3.4400 3.5488 -0.1349 37 1 5.5487 8.2618 -1.5527 38 1 4.5789 8.1906 -0.0619 39 1 6.2875 8.6841 0.0105 40 1 8.7533 3.6167 -0.7751 41 1 9.1710 4.5035 0.7106 42 1 8.1031 3.0819 0.7931 43 1 0.6419 2.2135 -1.2999 44 1 3.2263 1.2330 -2.3253 45 1 1.6657 0.3889 -2.4674 46 1 2.6804 0.8050 -4.9293 47 1 3.2212 0.3585 -8.1924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732195969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:19 Heat of formation + Delta-G solvation = -86.130678 kcal Electronic energy + Delta-G solvation = -29676.765446 eV Core-core repulsion = 25473.839416 eV Total energy + Delta-G solvation = -4202.926030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.54241 -40.90872 -40.18123 -38.68333 -36.55488 -35.96754 -35.17180 -33.79845 -33.31944 -32.77139 -30.34906 -30.23851 -28.60591 -27.71659 -26.06499 -24.52296 -23.06049 -22.72306 -21.85362 -21.47216 -20.66219 -19.91385 -19.11415 -18.36983 -18.14711 -17.23598 -17.12432 -16.80722 -16.50881 -16.18528 -15.91992 -15.67098 -15.42190 -15.26255 -15.12022 -14.80191 -14.45468 -14.29904 -14.09422 -14.04681 -13.89449 -13.57085 -13.53448 -13.48717 -13.18178 -13.15467 -12.90847 -12.75397 -12.44548 -12.33272 -12.14625 -12.08554 -12.02703 -11.86034 -11.67641 -11.50211 -11.29121 -10.37152 -10.30273 -10.02348 -9.80769 -9.35471 -8.47525 -5.96414 -0.31890 1.25544 1.32007 1.38177 1.39791 1.50846 1.91866 2.04891 2.10727 2.27811 2.86147 2.93196 3.19647 3.49164 3.60223 3.66879 3.69397 4.00912 4.15138 4.25907 4.27407 4.31717 4.34762 4.45748 4.51008 4.56629 4.59007 4.59476 4.64640 4.72341 4.73114 4.78883 4.85817 4.91312 5.06592 5.11996 5.22191 5.26474 5.32451 5.38042 5.39160 5.86065 6.06950 6.24928 6.39437 6.51517 6.58648 6.92733 7.11505 7.55413 8.10400 8.69759 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007664 B = 0.003518 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.697793 B = 7957.088080 C =10125.582299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.082 3.918 4 H 0.113 0.887 5 C 0.124 3.876 6 N -0.694 5.694 7 C 0.604 3.396 8 O -0.545 6.545 9 C -0.145 4.145 10 O -0.193 6.193 11 C 0.226 3.774 12 C -0.063 4.063 13 N -0.515 5.515 14 C 0.072 3.928 15 C -0.076 4.076 16 N -0.668 5.668 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.269 1.269 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.415 0.585 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.353 0.647 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 4.357 18.893 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.194 4.194 3 C -0.028 4.028 4 H 0.130 0.870 5 C 0.001 3.999 6 N -0.344 5.344 7 C 0.390 3.610 8 O -0.426 6.426 9 C -0.199 4.199 10 O -0.081 6.081 11 C 0.021 3.979 12 C -0.119 4.119 13 N -0.246 5.246 14 C -0.052 4.052 15 C -0.133 4.133 16 N -0.301 5.301 17 C -0.069 4.069 18 C 0.226 3.774 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.194 1.194 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.252 0.748 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.173 0.827 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.861 5.134 18.886 19.948 hybrid contribution -1.279 -1.011 -1.295 2.082 sum 2.581 4.123 17.591 18.251 Atomic orbital electron populations 1.21747 0.94854 1.02382 1.01907 1.22161 0.96994 0.96579 1.03710 1.21980 0.93202 0.94798 0.92780 0.86959 1.21648 0.93810 0.81852 1.02628 1.45732 1.05966 1.11557 1.71101 1.16384 0.83250 0.84085 0.77269 1.90811 1.56547 1.43025 1.52240 1.22898 0.91685 0.87486 1.17853 1.84473 1.39409 1.15479 1.68727 1.27691 0.82693 0.93420 0.94059 1.20740 1.05416 0.79725 1.06065 1.70381 1.22516 1.10249 1.21415 1.22477 0.95043 0.90861 0.96866 1.20407 0.92074 0.97055 1.03783 1.60133 1.19562 1.50503 0.99913 1.21512 1.01569 0.95246 0.88576 1.20879 0.83392 0.87654 0.85441 1.90482 1.47154 1.25448 1.87305 1.41947 1.52256 1.21914 1.05167 1.19630 1.36833 1.04940 0.84938 0.90212 1.26042 0.96158 0.97232 1.01855 1.69675 1.39643 1.19496 1.27448 0.85007 0.78799 0.77952 0.76711 1.19822 1.19565 1.19426 0.94152 0.91823 0.91164 0.92021 0.89060 0.88962 0.92276 0.74794 0.87108 0.86831 0.85835 0.89804 0.88858 0.89156 0.82661 0.89254 0.91254 0.77289 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.70 71.98 0.70 -1.74 16 2 C -0.15 -2.54 5.10 30.59 0.16 -2.39 16 3 C 0.08 1.58 2.70 44.92 0.12 1.70 16 4 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 5 C 0.12 2.74 4.76 86.38 0.41 3.15 16 6 N -0.69 -18.25 5.38 -467.05 -2.51 -20.76 16 7 C 0.60 18.42 7.79 86.46 0.67 19.09 16 8 O -0.55 -18.24 14.79 -4.29 -0.06 -18.31 16 9 C -0.14 -4.39 7.18 24.05 0.17 -4.22 16 10 O -0.19 -5.46 10.57 -7.03 -0.07 -5.54 16 11 C 0.23 5.46 8.32 88.29 0.73 6.19 16 12 C -0.06 -0.79 10.51 71.23 0.75 -0.04 16 13 N -0.51 -14.31 11.26 -291.06 -3.28 -17.59 16 14 C 0.07 2.09 7.16 41.83 0.30 2.39 16 15 C -0.08 -1.83 9.87 71.24 0.70 -1.13 16 16 N -0.67 -18.37 5.32 -495.59 -2.64 -21.00 16 17 C 0.06 2.11 5.31 85.56 0.45 2.56 16 18 C 0.44 20.66 7.83 87.66 0.69 21.35 16 19 O -0.62 -33.37 15.90 -3.07 -0.05 -33.42 16 20 N -0.58 -29.82 5.29 -306.98 -1.62 -31.44 16 21 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 29 H 0.04 0.79 6.87 -2.39 -0.02 0.77 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.17 6.23 -2.39 -0.01 1.16 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.50 6.61 -2.39 -0.02 1.48 16 36 H 0.42 10.99 7.93 -92.71 -0.74 10.26 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 2.25 6.47 -2.39 -0.02 2.23 16 43 H 0.35 9.94 7.29 -89.69 -0.65 9.28 16 44 H 0.09 2.96 6.22 -2.39 -0.01 2.94 16 45 H 0.07 2.05 6.48 -2.39 -0.02 2.03 16 46 H 0.39 19.67 7.90 -92.71 -0.73 18.93 16 47 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -74.20 392.73 -1.86 -76.06 By element: Atomic # 1 Polarization: 49.61 SS G_CDS: -1.08 Total: 48.53 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 7.14 Total: 28.40 kcal Atomic # 7 Polarization: -131.24 SS G_CDS: -9.77 Total: -141.01 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.19 Total: -57.26 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -74.20 -1.86 -76.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732195969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.068 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds