Wall clock time and date at job start Tue Mar 31 2020 21:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 H 1.09006 * 109.46409 * 305.00011 * 5 4 2 7 7 C 1.52996 * 109.47453 * 185.00149 * 5 4 2 8 8 N 1.46495 * 109.46978 * 184.99908 * 7 5 4 9 9 C 1.36940 * 119.99609 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00426 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99780 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99879 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99915 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46966 * 90.00185 * 13 11 9 15 15 H 1.48493 * 109.46854 * 210.00142 * 13 11 9 16 16 H 1.48498 * 109.46830 * 330.00218 * 13 11 9 17 17 N 1.46498 * 109.47248 * 64.99480 * 5 4 2 18 18 C 1.34779 * 120.00209 * 275.00900 * 17 5 4 19 19 O 1.21277 * 119.99923 * 359.97438 * 18 17 5 20 20 C 1.50698 * 119.99742 * 179.97438 * 18 17 5 21 21 N 1.46498 * 109.46990 * 179.97438 * 20 18 17 22 22 C 1.36160 * 119.85640 * 269.72863 * 21 20 18 23 23 C 1.35547 * 119.25813 * 179.77147 * 22 21 20 24 24 C 1.40734 * 119.00060 * 0.49688 * 23 22 21 25 25 O 1.35153 * 120.16628 * 179.72840 * 24 23 22 26 26 N 1.32429 * 119.67031 * 359.74481 * 24 23 22 27 27 C 1.33272 * 120.72480 * 0.02562 * 26 24 23 28 28 O 1.21977 * 119.47315 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 37 37 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 38 38 H 1.09005 * 109.46682 * 304.99764 * 7 5 4 39 39 H 1.09003 * 109.47321 * 64.99282 * 7 5 4 40 40 H 0.96998 * 120.00617 * 359.97438 * 8 7 5 41 41 H 0.97003 * 119.99460 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99609 * 94.99925 * 17 5 4 43 43 H 1.08997 * 109.47262 * 299.99464 * 20 18 17 44 44 H 1.08999 * 109.47606 * 59.99686 * 20 18 17 45 45 H 1.08002 * 120.37046 * 0.02562 * 22 21 20 46 46 H 1.08006 * 120.49763 * 180.24304 * 23 22 21 47 47 H 0.96700 * 114.00403 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.8309 -1.1881 6 1 3.9954 0.1613 -1.0527 7 6 4.0852 -1.4391 -2.4920 8 7 5.5305 -1.6547 -2.3876 9 6 6.2200 -2.1943 -3.4405 10 1 5.6984 -2.4606 -4.3480 11 6 7.5896 -2.3981 -3.3419 12 7 8.2253 -2.0732 -2.2361 13 14 8.5303 -3.1335 -4.7785 14 1 9.0074 -2.0440 -5.6674 15 1 9.6944 -3.9006 -4.2671 16 1 7.6369 -4.0406 -5.5428 17 7 3.9481 -1.6871 -0.0627 18 6 4.0652 -1.1629 1.1735 19 8 3.8538 0.0175 1.3541 20 6 4.4588 -2.0438 2.3311 21 7 4.5173 -1.2429 3.5563 22 6 5.6842 -0.6416 3.9181 23 6 5.7234 0.1005 5.0516 24 6 4.5568 0.2199 5.8297 25 8 4.5709 0.9495 6.9673 26 7 3.4452 -0.3865 5.4418 27 6 3.4190 -1.1094 4.3225 28 8 2.3828 -1.6587 3.9870 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6055 -1.7197 -1.2953 37 1 1.7517 -0.1582 -2.1370 38 1 3.5878 -2.3921 -2.6722 39 1 3.8780 -0.7591 -3.3183 40 1 5.9990 -1.4153 -1.5727 41 1 9.1824 -2.2153 -2.1674 42 1 4.1174 -2.6312 -0.2073 43 1 3.7217 -2.8378 2.4505 44 1 5.4375 -2.4828 2.1374 45 1 6.5675 -0.7514 3.3064 46 1 6.6373 0.5894 5.3554 47 1 3.7227 0.9711 7.4313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732466223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:19 Heat of formation + Delta-G solvation = -56.615238 kcal Electronic energy + Delta-G solvation = -30562.153746 eV Core-core repulsion = 26360.507601 eV Total energy + Delta-G solvation = -4201.646144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95288 -39.96095 -38.81149 -36.99399 -36.58870 -35.00030 -34.59524 -33.55592 -31.58998 -31.22286 -29.51964 -27.89310 -26.85290 -25.59392 -24.97315 -23.59354 -22.89568 -21.27456 -20.32570 -19.92511 -19.66971 -18.28557 -17.74546 -17.49665 -17.07615 -16.09581 -15.92539 -15.70763 -15.48013 -14.88024 -14.77101 -14.47772 -14.29081 -14.03208 -13.86840 -13.62611 -13.51011 -13.41753 -13.05434 -12.96383 -12.46559 -12.18571 -12.05923 -11.97567 -11.91054 -11.50231 -11.09380 -11.02134 -10.91245 -10.88345 -10.55922 -10.44356 -10.27349 -10.21881 -10.05437 -9.97373 -9.80003 -9.65476 -9.01112 -8.74155 -8.69575 -7.06057 -5.89007 -3.17894 0.50800 1.55938 2.15278 2.69035 2.98302 3.28474 3.36126 3.42145 3.42703 3.74009 4.08992 4.36130 4.47980 4.60598 4.73099 4.88223 4.97539 5.04052 5.18807 5.18943 5.21500 5.28160 5.44782 5.56823 5.63474 5.71855 5.88461 5.90276 5.96788 6.05566 6.10619 6.14034 6.15836 6.21517 6.29430 6.39080 6.48963 6.60115 6.71811 6.81341 6.82734 6.85524 7.59718 7.64183 7.70084 8.04914 8.29550 8.35100 9.42006 9.96609 10.32513 11.33555 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.003413 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.958912 B = 8201.729585 C =10104.496127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.136 4.136 4 C -0.122 4.122 5 C 0.138 3.862 6 H 0.091 0.909 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.933 5.933 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.702 5.702 18 C 0.501 3.499 19 O -0.525 6.525 20 C 0.072 3.928 21 N -0.506 5.506 22 C 0.218 3.782 23 C -0.291 4.291 24 C 0.458 3.542 25 O -0.449 6.449 26 N -0.617 5.617 27 C 0.662 3.338 28 O -0.533 6.533 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.405 0.595 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.185 0.815 46 H 0.164 0.836 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 2.777 14.110 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.193 4.193 4 C -0.161 4.161 5 C 0.034 3.966 6 H 0.109 0.891 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.581 5.581 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.353 5.353 18 C 0.285 3.715 19 O -0.402 6.402 20 C -0.055 4.055 21 N -0.222 5.222 22 C 0.083 3.917 23 C -0.317 4.317 24 C 0.257 3.743 25 O -0.244 6.244 26 N -0.374 5.374 27 C 0.364 3.636 28 O -0.407 6.407 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.240 0.760 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.202 0.798 46 H 0.182 0.818 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -7.911 3.255 14.068 16.464 hybrid contribution 1.046 -0.758 -0.801 1.520 sum -6.865 2.497 13.266 15.144 Atomic orbital electron populations 1.21842 0.96343 1.01004 1.01010 1.21129 0.94366 0.97093 0.98531 1.21803 1.02733 0.95146 0.99576 1.22024 0.94935 1.00701 0.98446 1.21406 0.94063 0.95446 0.85700 0.89079 1.20979 0.86933 0.97437 0.93090 1.42323 1.01458 1.76104 1.17670 1.19227 0.90412 1.33308 0.94293 0.91142 1.24721 0.96535 1.02013 0.97463 1.69648 1.08573 1.53836 1.26084 0.86188 0.79580 0.78669 0.81720 1.21703 1.21763 1.20753 1.45856 1.69029 1.13520 1.06893 1.20403 0.77892 0.88919 0.84242 1.90742 1.49522 1.15804 1.84096 1.21893 1.06902 0.94519 0.82159 1.45989 1.10954 1.43021 1.22217 1.22441 0.90015 0.86091 0.93201 1.20578 1.00317 1.12117 0.98688 1.20423 0.89236 0.81264 0.83391 1.84984 1.41214 1.65033 1.33171 1.69622 1.26695 1.21748 1.19345 1.17237 0.83134 0.81987 0.81250 1.91000 1.28540 1.49495 1.71681 0.93234 0.93278 0.93253 0.90573 0.90798 0.94312 0.94027 0.91893 0.91123 0.95681 0.94823 0.78124 0.93523 0.75965 0.85202 0.85363 0.79752 0.81805 0.72802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 2 C -0.09 -1.36 2.38 -90.62 -0.22 -1.58 16 3 C -0.14 -2.05 8.04 37.16 0.30 -1.75 16 4 C -0.12 -1.68 4.36 -26.73 -0.12 -1.80 16 5 C 0.14 2.14 2.33 -67.93 -0.16 1.98 16 6 H 0.09 1.60 5.92 -51.93 -0.31 1.29 16 7 C 0.14 2.61 5.82 -4.05 -0.02 2.58 16 8 N -0.73 -16.76 5.43 -59.91 -0.33 -17.09 16 9 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 10 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -26.20 13.06 55.49 0.72 -25.48 16 13 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 N -0.70 -9.85 4.47 -53.81 -0.24 -10.09 16 18 C 0.50 7.10 6.45 -10.99 -0.07 7.03 16 19 O -0.52 -8.83 11.39 5.56 0.06 -8.77 16 20 C 0.07 0.79 5.83 -5.20 -0.03 0.76 16 21 N -0.51 -6.14 2.08 -123.16 -0.26 -6.39 16 22 C 0.22 1.97 10.40 -16.59 -0.17 1.80 16 23 C -0.29 -2.53 10.03 -39.60 -0.40 -2.93 16 24 C 0.46 4.87 7.91 -16.35 -0.13 4.74 16 25 O -0.45 -3.51 13.55 -17.16 -0.23 -3.74 16 26 N -0.62 -8.77 10.40 -16.72 -0.17 -8.94 16 27 C 0.66 10.41 8.34 -88.43 -0.74 9.67 16 28 O -0.53 -10.17 16.72 4.94 0.08 -10.09 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.30 5.19 -51.93 -0.27 1.03 16 33 H 0.07 1.24 4.76 -51.93 -0.25 1.00 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.38 9.26 7.33 -40.82 -0.30 8.96 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.41 5.26 8.60 -40.82 -0.35 4.91 16 43 H 0.13 1.40 7.38 -51.93 -0.38 1.01 16 44 H 0.13 1.00 8.03 -51.93 -0.42 0.58 16 45 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.42 1.80 8.98 45.56 0.41 2.21 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -35.83 386.28 -7.28 -43.11 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.06 Total: 13.27 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -1.66 Total: 12.09 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.27 Total: -67.99 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.09 Total: -22.60 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.83 -7.28 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732466223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.501 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds