Wall clock time and date at job start Tue Mar 31 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 H 1.09006 * 109.46409 * 305.00011 * 5 4 2 7 7 C 1.52996 * 109.47453 * 185.00149 * 5 4 2 8 8 N 1.46495 * 109.46978 * 184.99908 * 7 5 4 9 9 C 1.36940 * 119.99609 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00426 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99780 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99879 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99915 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46966 * 90.00185 * 13 11 9 15 15 H 1.48493 * 109.46854 * 210.00142 * 13 11 9 16 16 H 1.48498 * 109.46830 * 330.00218 * 13 11 9 17 17 N 1.46498 * 109.47248 * 64.99480 * 5 4 2 18 18 C 1.34779 * 120.00209 * 275.00900 * 17 5 4 19 19 O 1.21277 * 119.99923 * 359.97438 * 18 17 5 20 20 C 1.50698 * 119.99742 * 179.97438 * 18 17 5 21 21 N 1.46498 * 109.46990 * 179.97438 * 20 18 17 22 22 C 1.36160 * 119.85640 * 269.72863 * 21 20 18 23 23 C 1.35547 * 119.25813 * 179.77147 * 22 21 20 24 24 C 1.40734 * 119.00060 * 0.49688 * 23 22 21 25 25 O 1.35153 * 120.16628 * 179.72840 * 24 23 22 26 26 N 1.32429 * 119.67031 * 359.74481 * 24 23 22 27 27 C 1.33272 * 120.72480 * 0.02562 * 26 24 23 28 28 O 1.21977 * 119.47315 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 37 37 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 38 38 H 1.09005 * 109.46682 * 304.99764 * 7 5 4 39 39 H 1.09003 * 109.47321 * 64.99282 * 7 5 4 40 40 H 0.96998 * 120.00617 * 359.97438 * 8 7 5 41 41 H 0.97003 * 119.99460 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99609 * 94.99925 * 17 5 4 43 43 H 1.08997 * 109.47262 * 299.99464 * 20 18 17 44 44 H 1.08999 * 109.47606 * 59.99686 * 20 18 17 45 45 H 1.08002 * 120.37046 * 0.02562 * 22 21 20 46 46 H 1.08006 * 120.49763 * 180.24304 * 23 22 21 47 47 H 0.96700 * 114.00403 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5649 -0.8309 -1.1881 6 1 3.9954 0.1613 -1.0527 7 6 4.0852 -1.4391 -2.4920 8 7 5.5305 -1.6547 -2.3876 9 6 6.2200 -2.1943 -3.4405 10 1 5.6984 -2.4606 -4.3480 11 6 7.5896 -2.3981 -3.3419 12 7 8.2253 -2.0732 -2.2361 13 14 8.5303 -3.1335 -4.7785 14 1 9.0074 -2.0440 -5.6674 15 1 9.6944 -3.9006 -4.2671 16 1 7.6369 -4.0406 -5.5428 17 7 3.9481 -1.6871 -0.0627 18 6 4.0652 -1.1629 1.1735 19 8 3.8538 0.0175 1.3541 20 6 4.4588 -2.0438 2.3311 21 7 4.5173 -1.2429 3.5563 22 6 5.6842 -0.6416 3.9181 23 6 5.7234 0.1005 5.0516 24 6 4.5568 0.2199 5.8297 25 8 4.5709 0.9495 6.9673 26 7 3.4452 -0.3865 5.4418 27 6 3.4190 -1.1094 4.3225 28 8 2.3828 -1.6587 3.9870 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6055 -1.7197 -1.2953 37 1 1.7517 -0.1582 -2.1370 38 1 3.5878 -2.3921 -2.6722 39 1 3.8780 -0.7591 -3.3183 40 1 5.9990 -1.4153 -1.5727 41 1 9.1824 -2.2153 -2.1674 42 1 4.1174 -2.6312 -0.2073 43 1 3.7217 -2.8378 2.4505 44 1 5.4375 -2.4828 2.1374 45 1 6.5675 -0.7514 3.3064 46 1 6.6373 0.5894 5.3554 47 1 3.7227 0.9711 7.4313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732466223.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:18 Heat of formation + Delta-G solvation = -86.683344 kcal Electronic energy + Delta-G solvation = -30563.457597 eV Core-core repulsion = 26360.507601 eV Total energy + Delta-G solvation = -4202.949995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.89112 -41.08413 -39.65530 -38.18565 -37.66813 -36.46985 -35.51112 -35.04179 -33.06415 -32.30256 -30.91587 -28.90193 -28.01304 -27.17385 -25.80769 -24.77026 -24.38175 -22.55342 -21.51125 -20.86271 -20.74856 -19.31005 -19.09493 -18.56008 -18.36772 -17.19613 -17.01672 -16.80420 -16.77037 -16.32344 -15.67020 -15.53311 -15.44800 -15.23242 -15.05880 -14.80989 -14.64820 -14.53752 -14.41847 -14.23465 -13.77357 -13.34006 -13.22849 -13.04328 -12.99802 -12.93268 -12.77367 -12.59572 -12.35807 -12.07859 -12.00421 -11.87912 -11.67168 -11.43247 -11.35565 -11.27580 -10.95991 -10.94664 -10.75486 -9.92426 -9.65041 -8.95989 -7.91357 -5.18879 -0.30624 0.68483 1.25338 1.51548 1.53018 1.60096 1.60659 2.21672 2.27158 2.58905 2.74919 3.28922 3.43389 3.58055 3.64790 3.77739 3.84202 3.98806 4.05091 4.13505 4.20938 4.24300 4.34837 4.41386 4.45449 4.58229 4.65585 4.75305 4.84091 4.86007 4.92746 4.97443 5.03080 5.11913 5.18273 5.21534 5.34841 5.35491 5.51825 5.55412 5.58782 5.62757 6.17117 6.30736 6.56133 6.69199 7.04815 7.24940 7.39259 8.11124 8.37185 9.31319 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.003413 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.958912 B = 8201.729585 C =10104.496127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.113 4.113 5 C 0.151 3.849 6 H 0.070 0.930 7 C 0.147 3.853 8 N -0.738 5.738 9 C -0.243 4.243 10 H 0.074 0.926 11 C -0.066 4.066 12 N -0.961 5.961 13 Si 0.966 3.034 14 H -0.293 1.293 15 H -0.296 1.296 16 H -0.272 1.272 17 N -0.699 5.699 18 C 0.498 3.502 19 O -0.554 6.554 20 C 0.076 3.924 21 N -0.508 5.508 22 C 0.214 3.786 23 C -0.284 4.284 24 C 0.458 3.542 25 O -0.440 6.440 26 N -0.653 5.653 27 C 0.652 3.348 28 O -0.587 6.587 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.034 0.966 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.411 0.589 43 H 0.131 0.869 44 H 0.166 0.834 45 H 0.222 0.778 46 H 0.198 0.802 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 2.595 13.716 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.185 4.185 4 C -0.152 4.152 5 C 0.046 3.954 6 H 0.088 0.912 7 C 0.020 3.980 8 N -0.382 5.382 9 C -0.375 4.375 10 H 0.092 0.908 11 C -0.259 4.259 12 N -0.612 5.612 13 Si 0.796 3.204 14 H -0.221 1.221 15 H -0.222 1.222 16 H -0.197 1.197 17 N -0.351 5.351 18 C 0.284 3.716 19 O -0.433 6.433 20 C -0.050 4.050 21 N -0.222 5.222 22 C 0.080 3.920 23 C -0.309 4.309 24 C 0.259 3.741 25 O -0.236 6.236 26 N -0.412 5.412 27 C 0.355 3.645 28 O -0.465 6.465 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.210 0.790 41 H 0.059 0.941 42 H 0.247 0.753 43 H 0.149 0.851 44 H 0.184 0.816 45 H 0.239 0.761 46 H 0.215 0.785 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.292 3.092 13.695 15.821 hybrid contribution 0.859 -0.593 -0.601 1.205 sum -6.433 2.499 13.094 14.801 Atomic orbital electron populations 1.21798 0.94985 1.01577 1.01446 1.21038 0.95437 0.96413 0.97826 1.21712 1.01436 0.95693 0.99658 1.21950 0.93440 1.01403 0.98418 1.21130 0.94980 0.94302 0.85006 0.91232 1.21068 0.84513 0.97997 0.94461 1.42435 1.03253 1.75815 1.16694 1.19567 0.90805 1.32172 0.94960 0.90831 1.25400 0.97527 1.03352 0.99644 1.69770 1.08374 1.55403 1.27627 0.85260 0.78231 0.77794 0.79140 1.22097 1.22221 1.19694 1.45794 1.69009 1.13604 1.06702 1.20903 0.77067 0.88910 0.84751 1.90730 1.50710 1.17279 1.84545 1.21995 1.08849 0.93591 0.80519 1.45870 1.11134 1.43244 1.21961 1.23146 0.89895 0.85273 0.93729 1.21025 1.00702 1.11277 0.97921 1.20743 0.89001 0.80441 0.83920 1.84984 1.42368 1.63998 1.32224 1.69498 1.28832 1.23193 1.19726 1.17412 0.83363 0.81921 0.81848 1.90938 1.30566 1.51906 1.73129 0.91623 0.92661 0.93970 0.93067 0.92680 0.92864 0.95146 0.90798 0.89947 0.94456 0.94858 0.78976 0.94052 0.75256 0.85136 0.81646 0.76129 0.78515 0.71091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.19 71.98 0.66 -2.90 16 2 C -0.09 -2.57 2.38 -10.79 -0.03 -2.59 16 3 C -0.13 -3.88 8.04 71.98 0.58 -3.30 16 4 C -0.11 -2.98 4.36 30.59 0.13 -2.84 16 5 C 0.15 4.57 2.33 44.99 0.10 4.67 16 6 H 0.07 2.46 5.92 -2.38 -0.01 2.44 16 7 C 0.15 5.14 5.82 86.38 0.50 5.64 16 8 N -0.74 -33.29 5.43 -343.45 -1.87 -35.15 16 9 C -0.24 -12.44 9.99 84.03 0.84 -11.60 16 10 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 11 C -0.07 -3.51 5.50 84.86 0.47 -3.05 16 12 N -0.96 -53.66 13.06 21.65 0.28 -53.38 16 13 Si 0.97 43.26 29.55 68.60 2.03 45.29 16 14 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 N -0.70 -19.26 4.47 -442.54 -1.98 -21.24 16 18 C 0.50 14.02 6.45 87.66 0.57 14.58 16 19 O -0.55 -18.92 11.39 -3.02 -0.03 -18.96 16 20 C 0.08 1.63 5.83 85.63 0.50 2.13 16 21 N -0.51 -12.02 2.08 -661.78 -1.38 -13.39 16 22 C 0.21 3.43 10.40 83.40 0.87 4.30 16 23 C -0.28 -4.31 10.03 22.26 0.22 -4.08 16 24 C 0.46 9.26 7.91 85.21 0.67 9.93 16 25 O -0.44 -6.18 13.55 -84.31 -1.14 -7.33 16 26 N -0.65 -18.85 10.40 -438.82 -4.56 -23.41 16 27 C 0.65 21.03 8.34 179.58 1.50 22.53 16 28 O -0.59 -23.50 16.72 -5.24 -0.09 -23.59 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.77 5.19 -2.39 -0.01 1.76 16 33 H 0.05 1.89 4.76 -2.39 -0.01 1.88 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.38 18.02 7.33 -92.71 -0.68 17.34 16 41 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 42 H 0.41 10.30 8.60 -92.71 -0.80 9.50 16 43 H 0.13 2.81 7.38 -2.39 -0.02 2.79 16 44 H 0.17 2.21 8.03 -2.39 -0.02 2.19 16 45 H 0.22 1.79 8.06 -2.91 -0.02 1.77 16 46 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.43 3.29 8.98 -74.06 -0.66 2.63 16 Total: -1.00 -78.77 386.28 -2.26 -81.03 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -1.11 Total: 36.70 kcal Atomic # 6 Polarization: 25.84 SS G_CDS: 7.59 Total: 33.42 kcal Atomic # 7 Polarization: -137.07 SS G_CDS: -9.50 Total: -146.57 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -1.26 Total: -49.88 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -78.77 -2.26 -81.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732466223.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.653 kcal (2) G-P(sol) polarization free energy of solvation -78.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds