Wall clock time and date at job start Tue Mar 31 2020 21:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 N 1.46507 * 109.46803 * 175.00213 * 6 4 2 8 8 C 1.34773 * 119.99647 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99967 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47267 * 179.97438 * 10 8 7 12 12 N 1.46491 * 109.47168 * 180.02562 * 11 10 8 13 13 C 1.37898 * 120.06507 * 90.00118 * 12 11 10 14 14 C 1.32993 * 121.65424 * 180.02562 * 13 12 11 15 15 N 1.37896 * 121.65483 * 359.97409 * 14 13 12 16 16 H 0.96997 * 120.06556 * 179.97438 * 15 14 13 17 17 C 1.35066 * 119.87538 * 0.02847 * 15 14 13 18 18 O 1.21574 * 120.76647 * 179.97438 * 17 15 14 19 19 C 1.35069 * 120.06391 * 269.73163 * 12 11 10 20 20 O 1.21586 * 120.76204 * 359.97438 * 19 12 11 21 21 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 22 22 C 1.36933 * 119.99983 * 84.99832 * 21 4 2 23 23 H 1.08002 * 120.00189 * 0.02562 * 22 21 4 24 24 C 1.38812 * 120.00422 * 179.97438 * 22 21 4 25 25 N 1.31623 * 119.99438 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00488 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47306 * 60.00034 * 26 24 22 28 28 H 1.48498 * 109.47382 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47182 * 299.99946 * 26 24 22 30 30 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 31 31 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 34 34 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 36 36 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 37 37 H 1.09008 * 109.47142 * 294.99397 * 6 4 2 38 38 H 1.08990 * 109.47170 * 54.99895 * 6 4 2 39 39 H 0.96994 * 119.99737 * 359.97438 * 7 6 4 40 40 H 1.08994 * 109.46898 * 300.00344 * 10 8 7 41 41 H 1.09000 * 109.46513 * 60.00010 * 10 8 7 42 42 H 1.09003 * 109.47165 * 300.00552 * 11 10 8 43 43 H 1.09000 * 109.46818 * 60.00293 * 11 10 8 44 44 H 1.07999 * 119.16717 * 0.02562 * 13 12 11 45 45 H 1.07999 * 119.17325 * 179.97438 * 14 13 12 46 46 H 0.96997 * 120.00274 * 264.99726 * 21 4 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 7 2.1142 -2.8884 2.3805 8 6 1.8053 -4.1846 2.5824 9 8 1.0441 -4.7514 1.8273 10 6 2.4067 -4.9301 3.7459 11 6 1.8957 -6.3722 3.7467 12 7 2.4797 -7.0967 4.8780 13 6 1.8340 -7.1116 6.0964 14 6 2.3359 -7.7585 7.1444 15 7 3.5275 -8.4482 7.0664 16 1 3.8725 -8.9118 7.8454 17 6 4.2139 -8.4759 5.9035 18 8 5.2662 -9.0785 5.8168 19 6 3.6491 -7.7559 4.7283 20 8 4.2295 -7.7580 3.6599 21 7 3.5050 -0.7218 1.2488 22 6 4.1902 0.3528 1.7497 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3522 1.7498 25 7 6.2359 -0.6816 1.2689 26 14 6.5130 1.8177 2.4338 27 1 6.1542 2.0111 3.8617 28 1 7.9728 1.5714 2.3187 29 1 6.1549 3.0362 1.6641 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 0.4437 -2.1652 1.3387 38 1 1.8183 -2.6510 0.3177 39 1 2.7233 -2.4351 2.9842 40 1 3.4929 -4.9292 3.6557 41 1 2.1191 -4.4426 4.6774 42 1 0.8094 -6.3727 3.8371 43 1 2.1829 -6.8599 2.8151 44 1 0.8973 -6.5846 6.2021 45 1 1.7966 -7.7434 8.0800 46 1 3.9897 -1.4833 0.8937 47 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732567278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:36 Heat of formation + Delta-G solvation = -77.452363 kcal Electronic energy + Delta-G solvation = -29271.685659 eV Core-core repulsion = 25069.135949 eV Total energy + Delta-G solvation = -4202.549710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86623 -39.63205 -38.75908 -37.95957 -37.29104 -35.34524 -33.89786 -33.14365 -31.99480 -30.42659 -29.86028 -28.19515 -26.48498 -25.99395 -23.95603 -23.78572 -22.97899 -21.68053 -20.17830 -19.28469 -19.26407 -18.95363 -17.79401 -17.34932 -16.89126 -16.53970 -15.96511 -15.68849 -15.62989 -15.13118 -15.03925 -14.45379 -14.24003 -14.02581 -13.86208 -13.70658 -13.48221 -13.36654 -13.10401 -13.03399 -12.65023 -12.30147 -12.16869 -12.05254 -11.77218 -11.65565 -11.34767 -11.07049 -10.97238 -10.84095 -10.76125 -10.66716 -10.32639 -10.14272 -10.11732 -9.99861 -9.66416 -9.55515 -8.94334 -8.67386 -8.04171 -7.05877 -5.83628 -3.13618 0.97083 1.32590 2.02352 2.53862 2.83788 3.06030 3.37739 3.43312 3.45219 3.53523 3.74831 4.47082 4.51627 4.66023 4.72573 4.75188 5.04607 5.16401 5.28722 5.31166 5.37342 5.50044 5.54863 5.60467 5.65894 5.72846 5.81457 5.87747 5.97439 6.15497 6.20087 6.21561 6.28331 6.34522 6.42267 6.50737 6.60056 6.64619 6.82906 6.87962 7.04433 7.05721 7.27687 7.58277 7.63441 7.84823 8.33185 8.47035 9.45103 9.99702 10.35334 11.37828 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.002691 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.664244 B =10402.851294 C =12135.686511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.709 5.709 8 C 0.517 3.483 9 O -0.557 6.557 10 C -0.159 4.159 11 C 0.120 3.880 12 N -0.518 5.518 13 C 0.023 3.977 14 C 0.005 3.995 15 N -0.627 5.627 16 H 0.418 0.582 17 C 0.499 3.501 18 O -0.484 6.484 19 C 0.491 3.509 20 O -0.469 6.469 21 N -0.721 5.721 22 C -0.240 4.240 23 H 0.072 0.928 24 C -0.009 4.009 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.173 0.827 45 H 0.174 0.826 46 H 0.385 0.615 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 -10.645 13.118 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.360 5.360 8 C 0.302 3.698 9 O -0.436 6.436 10 C -0.200 4.200 11 C -0.001 4.001 12 N -0.244 5.244 13 C -0.097 4.097 14 C -0.115 4.115 15 N -0.275 5.275 16 H 0.256 0.744 17 C 0.281 3.719 18 O -0.354 6.354 19 C 0.275 3.725 20 O -0.338 6.338 21 N -0.363 5.363 22 C -0.371 4.371 23 H 0.090 0.910 24 C -0.206 4.206 25 N -0.575 5.575 26 Si 0.734 3.266 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.190 0.810 45 H 0.191 0.809 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.014 -11.163 11.720 21.409 hybrid contribution 1.112 0.831 0.931 1.671 sum -12.902 -10.332 12.651 20.815 Atomic orbital electron populations 1.21940 0.96873 1.00926 1.00917 1.21737 0.93521 0.97818 1.00103 1.21816 1.04240 0.94615 0.98973 1.20541 0.86425 0.91093 0.95978 0.92912 1.21758 0.97217 0.93274 0.88890 1.45989 1.48276 1.10842 1.30897 1.20193 0.81378 0.82261 0.85949 1.90683 1.37156 1.67886 1.47882 1.21969 1.03709 0.95506 0.98813 1.21594 0.98870 0.90699 0.88982 1.45682 1.20597 1.46296 1.11782 1.21142 1.00444 1.04306 0.83769 1.20995 0.89446 1.00670 1.00432 1.43543 1.21220 1.49094 1.13642 0.74394 1.20388 0.85396 0.82425 0.83666 1.90932 1.20882 1.41071 1.82481 1.20333 0.81554 0.81044 0.89609 1.90946 1.58131 1.58560 1.26136 1.42462 0.98713 1.21244 1.73875 1.19130 0.88747 0.96451 1.32793 0.90996 1.24739 0.96496 0.97649 1.01695 1.69649 1.07084 1.29729 1.51054 0.86348 0.79181 0.82358 0.78744 1.21327 1.21778 1.21261 0.93222 0.93564 0.93053 0.91891 0.89487 0.95005 0.94085 0.91537 0.91850 0.75249 0.88002 0.88373 0.88027 0.87754 0.80977 0.80891 0.78069 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 2 C -0.11 -1.82 2.69 -90.63 -0.24 -2.07 16 3 C -0.14 -2.45 8.26 37.15 0.31 -2.15 16 4 C 0.17 3.01 2.18 -67.93 -0.15 2.86 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.82 4.73 -4.04 -0.02 1.80 16 7 N -0.71 -10.93 5.39 -60.29 -0.32 -11.26 16 8 C 0.52 7.61 7.83 -10.98 -0.09 7.53 16 9 O -0.56 -9.68 15.98 5.55 0.09 -9.59 16 10 C -0.16 -1.79 6.02 -27.88 -0.17 -1.95 16 11 C 0.12 1.23 4.70 -4.05 -0.02 1.21 16 12 N -0.52 -4.82 2.65 -116.82 -0.31 -5.13 16 13 C 0.02 0.12 10.25 -16.64 -0.17 -0.05 16 14 C 0.01 0.02 11.10 -16.64 -0.18 -0.17 16 15 N -0.63 -4.00 5.38 -12.59 -0.07 -4.07 16 16 H 0.42 1.64 8.93 -40.82 -0.36 1.27 16 17 C 0.50 5.89 8.03 -11.69 -0.09 5.79 16 18 O -0.48 -7.61 17.85 -10.29 -0.18 -7.79 16 19 C 0.49 6.43 7.73 -11.69 -0.09 6.34 16 20 O -0.47 -8.22 16.67 -10.31 -0.17 -8.39 16 21 N -0.72 -16.00 4.44 -53.43 -0.24 -16.24 16 22 C -0.24 -5.96 7.57 -15.06 -0.11 -6.07 16 23 H 0.07 1.74 7.40 -52.49 -0.39 1.35 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 26 Si 0.90 21.31 29.55 -169.99 -5.02 16.28 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.84 6.01 -51.93 -0.31 1.52 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.99 6.71 -51.92 -0.35 0.64 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 6.46 8.14 -40.82 -0.33 6.12 16 40 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.82 8.00 -51.93 -0.42 0.41 16 43 H 0.10 1.35 7.41 -51.93 -0.38 0.97 16 44 H 0.17 0.28 8.06 -52.49 -0.42 -0.14 16 45 H 0.17 -0.08 8.06 -52.49 -0.42 -0.50 16 46 H 0.39 9.50 7.80 -40.82 -0.32 9.18 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -34.93 392.30 -7.38 -42.31 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.99 Total: 12.80 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.80 Total: 11.06 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.22 Total: -62.60 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.27 Total: -25.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.93 -7.38 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732567278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.141 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds