Wall clock time and date at job start Tue Mar 31 2020 21:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 N 1.46507 * 109.46803 * 175.00213 * 6 4 2 8 8 C 1.34773 * 119.99647 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99967 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47267 * 179.97438 * 10 8 7 12 12 N 1.46491 * 109.47168 * 180.02562 * 11 10 8 13 13 C 1.37898 * 120.06507 * 90.00118 * 12 11 10 14 14 C 1.32993 * 121.65424 * 180.02562 * 13 12 11 15 15 N 1.37896 * 121.65483 * 359.97409 * 14 13 12 16 16 H 0.96997 * 120.06556 * 179.97438 * 15 14 13 17 17 C 1.35066 * 119.87538 * 0.02847 * 15 14 13 18 18 O 1.21574 * 120.76647 * 179.97438 * 17 15 14 19 19 C 1.35069 * 120.06391 * 269.73163 * 12 11 10 20 20 O 1.21586 * 120.76204 * 359.97438 * 19 12 11 21 21 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 22 22 C 1.36933 * 119.99983 * 84.99832 * 21 4 2 23 23 H 1.08002 * 120.00189 * 0.02562 * 22 21 4 24 24 C 1.38812 * 120.00422 * 179.97438 * 22 21 4 25 25 N 1.31623 * 119.99438 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00488 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47306 * 60.00034 * 26 24 22 28 28 H 1.48498 * 109.47382 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47182 * 299.99946 * 26 24 22 30 30 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 31 31 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 34 34 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 36 36 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 37 37 H 1.09008 * 109.47142 * 294.99397 * 6 4 2 38 38 H 1.08990 * 109.47170 * 54.99895 * 6 4 2 39 39 H 0.96994 * 119.99737 * 359.97438 * 7 6 4 40 40 H 1.08994 * 109.46898 * 300.00344 * 10 8 7 41 41 H 1.09000 * 109.46513 * 60.00010 * 10 8 7 42 42 H 1.09003 * 109.47165 * 300.00552 * 11 10 8 43 43 H 1.09000 * 109.46818 * 60.00293 * 11 10 8 44 44 H 1.07999 * 119.16717 * 0.02562 * 13 12 11 45 45 H 1.07999 * 119.17325 * 179.97438 * 14 13 12 46 46 H 0.96997 * 120.00274 * 264.99726 * 21 4 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 7 2.1142 -2.8884 2.3805 8 6 1.8053 -4.1846 2.5824 9 8 1.0441 -4.7514 1.8273 10 6 2.4067 -4.9301 3.7459 11 6 1.8957 -6.3722 3.7467 12 7 2.4797 -7.0967 4.8780 13 6 1.8340 -7.1116 6.0964 14 6 2.3359 -7.7585 7.1444 15 7 3.5275 -8.4482 7.0664 16 1 3.8725 -8.9118 7.8454 17 6 4.2139 -8.4759 5.9035 18 8 5.2662 -9.0785 5.8168 19 6 3.6491 -7.7559 4.7283 20 8 4.2295 -7.7580 3.6599 21 7 3.5050 -0.7218 1.2488 22 6 4.1902 0.3528 1.7497 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3522 1.7498 25 7 6.2359 -0.6816 1.2689 26 14 6.5130 1.8177 2.4338 27 1 6.1542 2.0111 3.8617 28 1 7.9728 1.5714 2.3187 29 1 6.1549 3.0362 1.6641 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 0.4437 -2.1652 1.3387 38 1 1.8183 -2.6510 0.3177 39 1 2.7233 -2.4351 2.9842 40 1 3.4929 -4.9292 3.6557 41 1 2.1191 -4.4426 4.6774 42 1 0.8094 -6.3727 3.8371 43 1 2.1829 -6.8599 2.8151 44 1 0.8973 -6.5846 6.2021 45 1 1.7966 -7.7434 8.0800 46 1 3.9897 -1.4833 0.8937 47 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732567278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:35 Heat of formation + Delta-G solvation = -104.491018 kcal Electronic energy + Delta-G solvation = -29272.858143 eV Core-core repulsion = 25069.135949 eV Total energy + Delta-G solvation = -4203.722194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68048 -40.83129 -39.72271 -38.83757 -38.69362 -36.21424 -35.24341 -34.90483 -32.91202 -32.12176 -30.55306 -29.59443 -27.59621 -27.21930 -25.56781 -24.49014 -24.11957 -23.00943 -21.42816 -20.64953 -20.05412 -19.61334 -19.21562 -18.57379 -17.93499 -17.47917 -17.13180 -16.90057 -16.84610 -16.52412 -15.96653 -15.72101 -15.44655 -15.16462 -15.08489 -14.88439 -14.70827 -14.47682 -14.23261 -13.95184 -13.81941 -13.60373 -13.41188 -13.08701 -12.88969 -12.80560 -12.72286 -12.70546 -12.45740 -12.27763 -12.23342 -12.03072 -11.75079 -11.58586 -11.43147 -11.27205 -11.07879 -10.93920 -10.75541 -9.97493 -8.95725 -8.65581 -7.87242 -5.14591 0.04056 0.77745 1.19774 1.50031 1.51377 1.57132 1.64124 1.84626 2.25818 2.41800 2.60172 3.13295 3.46256 3.70098 3.85647 3.87021 3.93244 3.96169 4.19825 4.31830 4.32435 4.34306 4.42329 4.49027 4.60052 4.67505 4.79619 4.80712 4.86856 4.94688 5.00301 5.08971 5.10040 5.17936 5.28864 5.35406 5.51807 5.55185 5.61264 5.66813 5.72130 5.78769 6.15668 6.31123 6.32150 6.59952 6.81276 7.24494 7.40162 8.12936 8.36794 9.35349 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.002691 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.664244 B =10402.851294 C =12135.686511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.172 3.828 5 H 0.061 0.939 6 C 0.122 3.878 7 N -0.711 5.711 8 C 0.517 3.483 9 O -0.583 6.583 10 C -0.148 4.148 11 C 0.124 3.876 12 N -0.500 5.500 13 C 0.002 3.998 14 C 0.024 3.976 15 N -0.600 5.600 16 H 0.434 0.566 17 C 0.490 3.510 18 O -0.541 6.541 19 C 0.472 3.528 20 O -0.539 6.539 21 N -0.729 5.729 22 C -0.213 4.213 23 H 0.082 0.918 24 C -0.074 4.074 25 N -0.970 5.970 26 Si 0.958 3.042 27 H -0.276 1.276 28 H -0.307 1.307 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.410 0.590 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.219 0.781 45 H 0.233 0.767 46 H 0.370 0.630 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.465 -9.563 16.224 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.192 4.192 4 C 0.063 3.937 5 H 0.079 0.921 6 C -0.003 4.003 7 N -0.362 5.362 8 C 0.303 3.697 9 O -0.464 6.464 10 C -0.188 4.188 11 C 0.002 3.998 12 N -0.224 5.224 13 C -0.115 4.115 14 C -0.095 4.095 15 N -0.246 5.246 16 H 0.275 0.725 17 C 0.274 3.726 18 O -0.417 6.417 19 C 0.257 3.743 20 O -0.413 6.413 21 N -0.368 5.368 22 C -0.345 4.345 23 H 0.099 0.901 24 C -0.266 4.266 25 N -0.621 5.621 26 Si 0.789 3.211 27 H -0.202 1.202 28 H -0.234 1.234 29 H -0.209 1.209 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.247 0.753 40 H 0.098 0.902 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.087 0.913 44 H 0.235 0.765 45 H 0.249 0.751 46 H 0.202 0.798 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.060 -10.038 14.925 25.489 hybrid contribution 2.083 0.532 0.044 2.150 sum -15.977 -9.507 14.969 23.869 Atomic orbital electron populations 1.21842 0.93709 1.01958 1.02213 1.21641 0.96109 0.96726 0.98485 1.21731 1.01555 0.95601 1.00336 1.20708 0.83727 0.92435 0.96795 0.92076 1.21624 0.98251 0.91957 0.88447 1.46015 1.48280 1.11287 1.30608 1.20704 0.80758 0.81832 0.86360 1.90670 1.38543 1.68220 1.48994 1.21911 1.01954 0.95932 0.99008 1.21532 1.00374 0.89678 0.88220 1.45725 1.19220 1.44230 1.13207 1.22051 1.01980 1.05599 0.81906 1.22018 0.87499 0.97725 1.02208 1.43555 1.21223 1.47563 1.12290 0.72509 1.20287 0.85270 0.82403 0.84679 1.90893 1.23399 1.43938 1.83425 1.20737 0.82439 0.81699 0.89389 1.90897 1.60326 1.61624 1.28474 1.42608 1.00693 1.20049 1.73485 1.19446 0.88713 0.96576 1.29769 0.90050 1.25380 0.97696 0.99828 1.03662 1.69814 1.06325 1.31853 1.54123 0.85428 0.77095 0.79910 0.78643 1.20196 1.23443 1.20859 0.91929 0.92293 0.92182 0.93571 0.93443 0.93214 0.93188 0.89425 0.93898 0.75342 0.90226 0.84401 0.84772 0.91330 0.76452 0.75094 0.79803 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.84 71.98 0.64 -2.68 16 2 C -0.11 -3.42 2.69 -10.80 -0.03 -3.45 16 3 C -0.13 -4.54 8.26 71.98 0.59 -3.95 16 4 C 0.17 5.88 2.18 44.99 0.10 5.98 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 3.81 4.73 86.38 0.41 4.22 16 7 N -0.71 -21.43 5.39 -463.04 -2.49 -23.93 16 8 C 0.52 14.85 7.83 87.66 0.69 15.54 16 9 O -0.58 -19.96 15.98 -3.04 -0.05 -20.01 16 10 C -0.15 -3.16 6.02 29.85 0.18 -2.98 16 11 C 0.12 2.43 4.70 86.38 0.41 2.83 16 12 N -0.50 -8.62 2.65 -641.60 -1.70 -10.33 16 13 C 0.00 0.01 10.25 82.57 0.85 0.86 16 14 C 0.02 0.05 11.10 82.57 0.92 0.97 16 15 N -0.60 -6.08 5.38 -311.86 -1.68 -7.76 16 16 H 0.43 2.11 8.93 -92.71 -0.83 1.29 16 17 C 0.49 11.82 8.03 87.07 0.70 12.52 16 18 O -0.54 -18.25 17.85 10.96 0.20 -18.05 16 19 C 0.47 12.96 7.73 87.07 0.67 13.64 16 20 O -0.54 -20.87 16.67 10.92 0.18 -20.68 16 21 N -0.73 -32.55 4.44 -322.94 -1.43 -33.98 16 22 C -0.21 -10.55 7.57 84.03 0.64 -9.91 16 23 H 0.08 3.83 7.40 -2.91 -0.02 3.81 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 25 N -0.97 -57.69 13.06 21.65 0.28 -57.40 16 26 Si 0.96 44.38 29.55 68.60 2.03 46.41 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 28 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 29 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.34 6.54 -2.39 -0.02 1.32 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.97 6.01 -2.39 -0.01 1.96 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 2.40 6.71 -2.38 -0.02 2.38 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.41 12.62 8.14 -92.71 -0.75 11.86 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.13 1.77 8.00 -2.39 -0.02 1.75 16 43 H 0.07 1.89 7.41 -2.39 -0.02 1.87 16 44 H 0.22 -0.78 8.06 -2.91 -0.02 -0.80 16 45 H 0.23 -2.05 8.06 -2.91 -0.02 -2.08 16 46 H 0.37 18.83 7.80 -92.71 -0.72 18.10 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -84.64 392.30 1.27 -83.37 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -1.28 Total: 32.31 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 7.22 Total: 30.06 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -7.03 Total: -133.40 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: 0.33 Total: -58.75 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -84.64 1.27 -83.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732567278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.121 kcal (2) G-P(sol) polarization free energy of solvation -84.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds