Wall clock time and date at job start Tue Mar 31 2020 21:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21287 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00338 * 180.02562 * 8 7 6 11 11 C 1.52995 * 109.47276 * 179.97438 * 10 8 7 12 12 N 1.46500 * 109.47361 * 179.97438 * 11 10 8 13 13 C 1.37888 * 120.06221 * 89.99857 * 12 11 10 14 14 C 1.32989 * 121.65525 * 180.02562 * 13 12 11 15 15 N 1.37893 * 121.65649 * 359.97438 * 14 13 12 16 16 H 0.96999 * 120.06890 * 180.02562 * 15 14 13 17 17 C 1.35071 * 119.86799 * 0.02562 * 15 14 13 18 18 O 1.21582 * 120.76066 * 180.02562 * 17 15 14 19 19 C 1.35067 * 120.06496 * 269.73364 * 12 11 10 20 20 O 1.21589 * 120.75941 * 359.97438 * 19 12 11 21 21 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 31 31 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 32 32 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 34 34 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 36 36 H 1.08999 * 109.47000 * 60.00316 * 3 2 1 37 37 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 38 38 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 39 39 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 40 40 H 1.09005 * 109.46830 * 300.00121 * 10 8 7 41 41 H 1.09002 * 109.46892 * 59.99693 * 10 8 7 42 42 H 1.08997 * 109.47185 * 300.00164 * 11 10 8 43 43 H 1.09002 * 109.47351 * 60.00047 * 11 10 8 44 44 H 1.08005 * 119.17486 * 0.02594 * 13 12 11 45 45 H 1.08003 * 119.17827 * 180.02562 * 14 13 12 46 46 H 0.97000 * 119.99792 * 94.99575 * 21 4 2 47 47 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1715 -1.1269 1.8270 10 6 5.8856 -2.4705 3.7459 11 6 7.4155 -2.4710 3.7457 12 7 7.9039 -3.2631 4.8772 13 6 8.1337 -4.6143 4.7264 14 6 8.5763 -5.3635 5.7321 15 7 8.8287 -4.8275 6.9773 16 1 9.1516 -5.3953 7.6944 17 6 8.6256 -3.5103 7.1964 18 8 8.8433 -3.0206 8.2877 19 6 8.1349 -2.6703 6.0686 20 8 7.9428 -1.4790 6.2181 21 7 1.5516 -2.1024 1.2494 22 6 0.3101 -2.3896 1.7505 23 1 -0.3093 -1.5979 2.1454 24 6 -0.1549 -3.6976 1.7453 25 7 -1.3504 -3.9729 2.2220 26 14 0.9161 -5.0669 1.0617 27 1 1.7530 -5.6314 2.1509 28 1 0.0531 -6.1349 0.4963 29 1 1.7938 -4.5229 -0.0056 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.9329 -1.1563 0.3177 38 1 3.9337 0.3019 1.3384 39 1 3.4279 -1.9367 2.9844 40 1 5.5221 -2.0366 4.6775 41 1 5.5222 -3.4943 3.6560 42 1 7.7786 -2.9051 2.8142 43 1 7.7792 -1.4474 3.8354 44 1 7.9496 -5.0759 3.7675 45 1 8.7431 -6.4181 5.5693 46 1 2.1078 -2.8134 0.8944 47 1 -1.6752 -4.8869 2.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732567288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:40 Heat of formation + Delta-G solvation = -101.093536 kcal Electronic energy + Delta-G solvation = -29344.150032 eV Core-core repulsion = 25140.575163 eV Total energy + Delta-G solvation = -4203.574868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.69490 -40.87857 -39.73830 -38.90224 -38.75151 -36.22447 -35.29003 -34.92795 -32.96978 -32.61646 -30.59064 -29.73712 -27.66329 -27.31561 -25.35036 -24.50279 -24.03924 -23.00552 -21.49241 -20.88027 -20.06411 -19.63164 -19.54336 -18.60784 -17.95276 -17.49610 -17.12221 -17.06937 -16.82447 -16.54525 -15.98670 -15.84961 -15.46734 -15.12893 -14.98107 -14.93046 -14.70793 -14.54470 -14.32082 -14.07983 -13.91430 -13.83798 -13.46622 -13.10325 -12.92253 -12.90847 -12.82755 -12.72636 -12.45631 -12.31043 -12.25033 -11.91027 -11.75411 -11.59850 -11.50821 -11.32640 -11.09261 -10.96086 -10.79630 -10.02890 -9.25817 -8.68001 -7.92461 -5.25765 0.02795 0.75166 1.18692 1.41967 1.46100 1.53045 1.61380 1.82671 2.22605 2.37558 2.55450 3.10282 3.37215 3.58336 3.68241 3.83881 3.86086 3.90607 4.17910 4.25597 4.27988 4.29956 4.41745 4.44827 4.55492 4.62048 4.76010 4.77929 4.84997 4.90947 4.95384 5.05884 5.06940 5.16208 5.24287 5.31524 5.50088 5.51087 5.61985 5.69757 5.75397 5.89084 6.13513 6.28189 6.29191 6.55026 6.79049 7.15476 7.20517 7.88894 8.09209 9.28642 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.002745 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.042479 B =10199.351724 C =11608.811019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.142 4.142 4 C 0.175 3.825 5 H 0.053 0.947 6 C 0.119 3.881 7 N -0.717 5.717 8 C 0.518 3.482 9 O -0.579 6.579 10 C -0.151 4.151 11 C 0.123 3.877 12 N -0.500 5.500 13 C 0.000 4.000 14 C 0.026 3.974 15 N -0.601 5.601 16 H 0.434 0.566 17 C 0.490 3.510 18 O -0.540 6.540 19 C 0.476 3.524 20 O -0.535 6.535 21 N -0.743 5.743 22 C -0.207 4.207 23 H 0.063 0.937 24 C -0.063 4.063 25 N -0.985 5.985 26 Si 0.946 3.054 27 H -0.271 1.271 28 H -0.309 1.309 29 H -0.258 1.258 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.411 0.589 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.076 0.924 44 H 0.213 0.787 45 H 0.229 0.771 46 H 0.365 0.635 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.649 -5.362 0.853 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.200 4.200 4 C 0.066 3.934 5 H 0.071 0.929 6 C -0.005 4.005 7 N -0.368 5.368 8 C 0.305 3.695 9 O -0.460 6.460 10 C -0.192 4.192 11 C 0.001 3.999 12 N -0.224 5.224 13 C -0.117 4.117 14 C -0.094 4.094 15 N -0.247 5.247 16 H 0.275 0.725 17 C 0.274 3.726 18 O -0.415 6.415 19 C 0.261 3.739 20 O -0.409 6.409 21 N -0.387 5.387 22 C -0.338 4.338 23 H 0.081 0.919 24 C -0.254 4.254 25 N -0.637 5.637 26 Si 0.775 3.225 27 H -0.197 1.197 28 H -0.236 1.236 29 H -0.183 1.183 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.247 0.753 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.230 0.770 45 H 0.245 0.755 46 H 0.198 0.802 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.949 -3.808 1.019 22.300 hybrid contribution -0.468 -1.144 0.336 1.281 sum 21.481 -4.952 1.355 22.086 Atomic orbital electron populations 1.21723 0.95873 1.01680 0.99887 1.21610 0.95854 0.96509 0.98648 1.21861 1.01155 0.94934 1.02020 1.20653 0.90623 0.85150 0.96939 0.92855 1.21658 0.93652 0.96132 0.89065 1.46068 1.07118 1.52820 1.30812 1.20675 0.82091 0.80646 0.86093 1.90685 1.55872 1.50375 1.49029 1.21945 0.96858 1.03123 0.97230 1.21540 0.92522 0.97502 0.88330 1.45713 1.56484 1.09925 1.10316 1.21976 1.05727 0.80637 1.03368 1.21959 1.03850 1.01834 0.81708 1.43566 1.58548 1.07697 1.14937 0.72527 1.20306 0.80211 0.83729 0.88373 1.90896 1.51729 1.73334 1.25510 1.20640 0.80831 0.88320 0.84076 1.90874 1.51981 1.15878 1.82178 1.42760 1.17008 1.04358 1.74536 1.18912 0.92154 0.92972 1.29727 0.91942 1.25374 0.97725 0.99634 1.02663 1.69876 1.19984 1.19305 1.54487 0.85542 0.78473 0.79540 0.78954 1.19713 1.23630 1.18253 0.94503 0.93002 0.93305 0.91858 0.91771 0.92022 0.92836 0.91769 0.90094 0.75263 0.88966 0.85319 0.85422 0.90541 0.76994 0.75454 0.80176 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.26 71.98 0.59 -4.08 16 2 C -0.10 -3.16 2.69 -10.79 -0.03 -3.19 16 3 C -0.14 -3.39 8.84 71.99 0.64 -2.75 16 4 C 0.17 5.66 2.18 44.99 0.10 5.76 16 5 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 6 C 0.12 3.33 4.73 86.38 0.41 3.74 16 7 N -0.72 -19.09 5.39 -463.06 -2.49 -21.59 16 8 C 0.52 13.16 7.83 87.66 0.69 13.85 16 9 O -0.58 -17.90 15.98 -3.05 -0.05 -17.95 16 10 C -0.15 -2.81 6.02 29.85 0.18 -2.63 16 11 C 0.12 2.13 4.70 86.38 0.41 2.54 16 12 N -0.50 -7.76 2.65 -641.61 -1.70 -9.47 16 13 C 0.00 0.00 10.25 82.57 0.85 0.85 16 14 C 0.03 0.06 11.10 82.57 0.92 0.97 16 15 N -0.60 -5.53 5.38 -311.86 -1.68 -7.20 16 16 H 0.43 1.79 8.93 -92.71 -0.83 0.97 16 17 C 0.49 10.75 8.03 87.07 0.70 11.45 16 18 O -0.54 -16.77 17.85 10.94 0.20 -16.58 16 19 C 0.48 11.65 7.73 87.07 0.67 12.33 16 20 O -0.53 -18.26 16.67 10.92 0.18 -18.08 16 21 N -0.74 -29.43 4.24 -322.93 -1.37 -30.80 16 22 C -0.21 -10.33 8.05 84.04 0.68 -9.65 16 23 H 0.06 3.49 7.62 -2.91 -0.02 3.47 16 24 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 25 N -0.99 -59.46 13.97 21.65 0.30 -59.16 16 26 Si 0.95 41.40 27.74 68.60 1.90 43.30 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.26 -10.25 6.51 99.48 0.65 -9.60 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 2.09 6.01 -2.39 -0.01 2.07 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.08 2.14 6.71 -2.39 -0.02 2.13 16 39 H 0.41 11.06 8.14 -92.71 -0.75 10.31 16 40 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.13 1.59 8.00 -2.39 -0.02 1.57 16 43 H 0.08 1.81 7.41 -2.39 -0.02 1.79 16 44 H 0.21 -0.49 8.06 -2.91 -0.02 -0.51 16 45 H 0.23 -1.82 8.06 -2.91 -0.02 -1.85 16 46 H 0.36 14.13 5.66 -92.71 -0.52 13.61 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -82.85 389.18 1.40 -81.45 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -1.14 Total: 29.83 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 7.26 Total: 26.26 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.94 Total: -128.22 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: 0.33 Total: -52.61 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.90 Total: 43.30 kcal Total: -82.85 1.40 -81.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732567288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.648 kcal (2) G-P(sol) polarization free energy of solvation -82.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds