Wall clock time and date at job start Tue Mar 31 2020 20:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.46878 * 2 1 4 4 N 1.29938 * 125.37966 * 90.00212 * 3 2 1 5 5 C 1.36069 * 108.47722 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.44638 * 180.02562 * 5 4 3 7 7 O 1.21609 * 119.99744 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99932 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99830 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46938 * 325.00225 * 9 8 6 11 11 C 1.53000 * 109.46861 * 85.00099 * 9 8 6 12 12 C 1.52997 * 109.47004 * 205.00136 * 9 8 6 13 13 H 1.08993 * 109.47194 * 64.99579 * 12 9 8 14 14 C 1.53006 * 109.47127 * 304.99736 * 12 9 8 15 15 N 1.46902 * 109.47094 * 185.00358 * 12 9 8 16 16 C 1.46904 * 110.99949 * 205.00250 * 15 12 9 17 17 C 1.50702 * 109.47107 * 179.97438 * 16 15 12 18 18 O 1.21292 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99799 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99562 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00283 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99450 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47214 * 90.00035 * 24 22 20 26 26 H 1.48509 * 109.46800 * 209.99913 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99637 * 24 22 20 28 28 C 1.36091 * 107.10488 * 0.25707 * 5 4 3 29 29 O 1.34057 * 125.38068 * 269.96223 * 3 2 1 30 30 H 1.08998 * 109.46859 * 299.99569 * 1 2 3 31 31 H 1.08992 * 109.47241 * 60.00110 * 1 2 3 32 32 H 1.09004 * 109.46686 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46859 * 240.00431 * 2 1 3 34 34 H 1.08992 * 109.47241 * 119.99890 * 2 1 3 35 35 H 0.97001 * 120.00108 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47725 * 60.00045 * 11 9 8 37 37 H 1.09002 * 109.46818 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47412 * 299.99210 * 11 9 8 39 39 H 1.09001 * 109.46998 * 59.99868 * 14 12 9 40 40 H 1.09000 * 109.47050 * 180.02562 * 14 12 9 41 41 H 1.09001 * 109.46801 * 300.00272 * 14 12 9 42 42 H 1.00896 * 111.00544 * 81.04158 * 15 12 9 43 43 H 1.09002 * 109.46523 * 299.99312 * 16 15 12 44 44 H 1.08997 * 109.46880 * 59.99279 * 16 15 12 45 45 H 0.96997 * 120.00155 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 47 47 H 1.08002 * 126.52696 * 179.73582 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7176 3.3574 0.6638 6 6 3.1125 4.4723 1.5439 7 8 3.4846 5.5249 1.0618 8 7 3.0611 4.3248 2.8826 9 6 3.4531 5.4329 3.7571 10 1 4.2731 5.9853 3.2982 11 6 2.2595 6.3680 3.9614 12 6 3.9049 4.8796 5.1100 13 1 4.8082 4.2846 4.9759 14 6 2.7982 4.0011 5.6971 15 7 4.1836 5.9935 6.0263 16 6 5.1404 5.5928 7.0665 17 6 5.4016 6.7588 7.9849 18 8 4.8457 7.8193 7.7915 19 7 6.2528 6.6230 9.0209 20 6 6.4907 7.6839 9.8561 21 1 5.9958 8.6282 9.6840 22 6 7.3687 7.5440 10.9240 23 7 7.9713 6.3951 11.1330 24 14 7.6924 8.9893 12.0623 25 1 6.7178 8.9651 13.1824 26 1 9.0718 8.8933 12.6041 27 1 7.5452 10.2583 11.3053 28 6 2.7140 3.3637 -0.6971 29 8 2.2917 2.1524 -1.0930 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7647 3.4850 3.2670 36 1 1.4394 5.8157 4.4201 37 1 2.5509 7.1923 4.6124 38 1 1.9376 6.7624 2.9975 39 1 2.5913 3.1746 5.0173 40 1 3.1199 3.6073 6.6612 41 1 1.8948 4.5961 5.8312 42 1 3.3318 6.3471 6.4353 43 1 4.7269 4.7634 7.6403 44 1 6.0750 5.2816 6.5999 45 1 6.6975 5.7749 9.1753 46 1 8.5839 6.2974 11.8788 47 1 2.9991 4.1859 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733971547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:58 Heat of formation + Delta-G solvation = -56.377523 kcal Electronic energy + Delta-G solvation = -28455.504079 eV Core-core repulsion = 24253.868243 eV Total energy + Delta-G solvation = -4201.635836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.84662 -39.99361 -38.45799 -37.31985 -35.47312 -34.49678 -34.38082 -33.76612 -31.30403 -30.89023 -29.86916 -29.03847 -26.39372 -25.33755 -24.85380 -24.27402 -23.33726 -21.68529 -20.71515 -19.79810 -19.31870 -18.54519 -17.89213 -17.26268 -16.91677 -16.18535 -15.94202 -15.57882 -15.29328 -15.08114 -15.01685 -14.63517 -14.51804 -14.15708 -14.01501 -13.80162 -13.71003 -13.27119 -13.24801 -12.97513 -12.36596 -12.34292 -12.21024 -12.14272 -11.88780 -11.80085 -11.64813 -11.53238 -11.39824 -11.25736 -11.03601 -10.94166 -10.81654 -10.38181 -10.35549 -10.20451 -9.49660 -9.47133 -9.17196 -8.46090 -8.06273 -7.94651 -6.40549 -3.81261 0.73741 1.61001 2.13415 2.84455 3.06482 3.18981 3.27634 3.33938 3.41158 3.92166 4.11846 4.30588 4.33213 4.41513 4.53783 4.58217 4.74937 4.79112 4.82669 5.11671 5.14183 5.15488 5.20473 5.21567 5.27979 5.36599 5.39568 5.41704 5.53649 5.63850 5.67916 5.71300 5.80975 5.87515 5.98748 6.01068 6.11629 6.27439 6.37159 6.43874 7.00790 7.17758 7.38701 7.56554 7.64237 7.98587 8.07617 8.62495 9.19178 9.55584 10.06995 10.77191 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.001721 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.056476 B =16269.888501 C =16703.857831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C 0.198 3.802 4 N -0.460 5.460 5 C -0.071 4.071 6 C 0.601 3.399 7 O -0.534 6.534 8 N -0.706 5.706 9 C 0.152 3.848 10 H 0.099 0.901 11 C -0.163 4.163 12 C 0.078 3.922 13 H 0.083 0.917 14 C -0.190 4.190 15 N -0.658 5.658 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.012 3.988 29 O -0.196 6.196 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.406 0.594 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.353 0.647 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -16.837 -22.432 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.011 4.011 4 N -0.190 5.190 5 C -0.191 4.191 6 C 0.386 3.614 7 O -0.410 6.410 8 N -0.358 5.358 9 C 0.048 3.952 10 H 0.117 0.883 11 C -0.221 4.221 12 C -0.033 4.033 13 H 0.101 0.899 14 C -0.249 4.249 15 N -0.291 5.291 16 C -0.081 4.081 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.062 4.062 29 O -0.082 6.082 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.243 0.757 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.174 0.826 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.184 -15.330 -22.507 30.256 hybrid contribution -0.023 -0.595 0.806 1.003 sum -13.207 -15.925 -21.701 29.983 Atomic orbital electron populations 1.21800 0.92833 1.03233 1.03104 1.20139 0.97032 0.83845 1.05548 1.26377 0.99399 0.97003 0.78300 1.70752 1.15702 1.02611 1.29970 1.21864 1.09718 0.94336 0.93138 1.16717 0.77607 0.85016 0.82042 1.90850 1.47656 1.27153 1.75374 1.46022 1.66682 1.17935 1.05208 1.20968 0.98364 0.86703 0.89143 0.88346 1.22179 0.97389 1.00124 1.02433 1.21709 0.97841 0.91470 0.92285 0.89884 1.22621 1.00114 1.00534 1.01597 1.60018 1.17543 1.31326 1.20182 1.21708 0.97154 0.96364 0.92923 1.19795 0.84320 0.89573 0.83674 1.90527 1.53282 1.28884 1.73946 1.41858 1.39230 1.14278 1.24691 1.19712 1.23954 0.93294 1.05895 0.87897 1.25262 0.96493 0.97960 0.98254 1.69615 1.29565 1.24043 1.31129 0.85854 0.77460 0.81072 0.79882 1.20455 1.20940 1.19395 1.25320 0.98632 0.86507 0.95752 1.84397 1.63465 1.22429 1.37926 0.91604 0.92086 0.90668 0.88619 0.87305 0.75718 0.92791 0.89814 0.92535 0.92318 0.91909 0.91623 0.82632 0.93720 0.89542 0.77473 0.91901 0.75240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.90 37.16 0.37 -0.14 16 2 C -0.03 -0.11 6.56 -27.88 -0.18 -0.29 16 3 C 0.20 1.55 7.56 -13.08 -0.10 1.45 16 4 N -0.46 -4.57 11.06 -7.65 -0.08 -4.65 16 5 C -0.07 -0.76 6.99 -83.02 -0.58 -1.34 16 6 C 0.60 7.63 7.78 -12.52 -0.10 7.53 16 7 O -0.53 -8.24 16.55 5.27 0.09 -8.15 16 8 N -0.71 -7.99 4.99 -54.88 -0.27 -8.27 16 9 C 0.15 1.91 2.63 -67.93 -0.18 1.73 16 10 H 0.10 1.47 7.58 -51.93 -0.39 1.07 16 11 C -0.16 -2.01 8.86 37.16 0.33 -1.68 16 12 C 0.08 0.95 2.64 -67.71 -0.18 0.77 16 13 H 0.08 1.00 7.80 -51.93 -0.41 0.60 16 14 C -0.19 -1.92 8.68 37.16 0.32 -1.60 16 15 N -0.66 -10.34 5.23 -107.99 -0.56 -10.90 16 16 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 17 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 18 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 19 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.01 0.10 11.95 29.96 0.36 0.46 16 29 O -0.20 -1.59 10.73 6.49 0.07 -1.53 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.41 4.03 6.30 -40.82 -0.26 3.77 16 36 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 37 H 0.08 1.13 7.13 -51.93 -0.37 0.76 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.50 6.29 -51.93 -0.33 0.18 16 40 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 41 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 42 H 0.35 5.70 7.39 -39.29 -0.29 5.41 16 43 H 0.04 0.69 7.44 -51.93 -0.39 0.31 16 44 H 0.09 1.40 8.05 -51.93 -0.42 0.99 16 45 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 47 H 0.23 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -34.05 394.87 -6.09 -40.14 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.71 Total: 15.22 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.30 Total: 10.01 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.26 Total: -62.09 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.24 Total: -25.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.05 -6.09 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733971547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.240 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds