Wall clock time and date at job start Tue Mar 31 2020 20:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.46878 * 2 1 4 4 N 1.29938 * 125.37966 * 90.00212 * 3 2 1 5 5 C 1.36069 * 108.47722 * 179.97438 * 4 3 2 6 6 C 1.47425 * 126.44638 * 180.02562 * 5 4 3 7 7 O 1.21609 * 119.99744 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99932 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99830 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46938 * 325.00225 * 9 8 6 11 11 C 1.53000 * 109.46861 * 85.00099 * 9 8 6 12 12 C 1.52997 * 109.47004 * 205.00136 * 9 8 6 13 13 H 1.08993 * 109.47194 * 64.99579 * 12 9 8 14 14 C 1.53006 * 109.47127 * 304.99736 * 12 9 8 15 15 N 1.46902 * 109.47094 * 185.00358 * 12 9 8 16 16 C 1.46904 * 110.99949 * 205.00250 * 15 12 9 17 17 C 1.50702 * 109.47107 * 179.97438 * 16 15 12 18 18 O 1.21292 * 119.99798 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99799 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99562 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00283 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99450 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47214 * 90.00035 * 24 22 20 26 26 H 1.48509 * 109.46800 * 209.99913 * 24 22 20 27 27 H 1.48497 * 109.47495 * 329.99637 * 24 22 20 28 28 C 1.36091 * 107.10488 * 0.25707 * 5 4 3 29 29 O 1.34057 * 125.38068 * 269.96223 * 3 2 1 30 30 H 1.08998 * 109.46859 * 299.99569 * 1 2 3 31 31 H 1.08992 * 109.47241 * 60.00110 * 1 2 3 32 32 H 1.09004 * 109.46686 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46859 * 240.00431 * 2 1 3 34 34 H 1.08992 * 109.47241 * 119.99890 * 2 1 3 35 35 H 0.97001 * 120.00108 * 0.02562 * 8 6 5 36 36 H 1.08994 * 109.47725 * 60.00045 * 11 9 8 37 37 H 1.09002 * 109.46818 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47412 * 299.99210 * 11 9 8 39 39 H 1.09001 * 109.46998 * 59.99868 * 14 12 9 40 40 H 1.09000 * 109.47050 * 180.02562 * 14 12 9 41 41 H 1.09001 * 109.46801 * 300.00272 * 14 12 9 42 42 H 1.00896 * 111.00544 * 81.04158 * 15 12 9 43 43 H 1.09002 * 109.46523 * 299.99312 * 16 15 12 44 44 H 1.08997 * 109.46880 * 59.99279 * 16 15 12 45 45 H 0.96997 * 120.00155 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99553 * 180.02562 * 23 22 20 47 47 H 1.08002 * 126.52696 * 179.73582 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7176 3.3574 0.6638 6 6 3.1125 4.4723 1.5439 7 8 3.4846 5.5249 1.0618 8 7 3.0611 4.3248 2.8826 9 6 3.4531 5.4329 3.7571 10 1 4.2731 5.9853 3.2982 11 6 2.2595 6.3680 3.9614 12 6 3.9049 4.8796 5.1100 13 1 4.8082 4.2846 4.9759 14 6 2.7982 4.0011 5.6971 15 7 4.1836 5.9935 6.0263 16 6 5.1404 5.5928 7.0665 17 6 5.4016 6.7588 7.9849 18 8 4.8457 7.8193 7.7915 19 7 6.2528 6.6230 9.0209 20 6 6.4907 7.6839 9.8561 21 1 5.9958 8.6282 9.6840 22 6 7.3687 7.5440 10.9240 23 7 7.9713 6.3951 11.1330 24 14 7.6924 8.9893 12.0623 25 1 6.7178 8.9651 13.1824 26 1 9.0718 8.8933 12.6041 27 1 7.5452 10.2583 11.3053 28 6 2.7140 3.3637 -0.6971 29 8 2.2917 2.1524 -1.0930 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7647 3.4850 3.2670 36 1 1.4394 5.8157 4.4201 37 1 2.5509 7.1923 4.6124 38 1 1.9376 6.7624 2.9975 39 1 2.5913 3.1746 5.0173 40 1 3.1199 3.6073 6.6612 41 1 1.8948 4.5961 5.8312 42 1 3.3318 6.3471 6.4353 43 1 4.7269 4.7634 7.6403 44 1 6.0750 5.2816 6.5999 45 1 6.6975 5.7749 9.1753 46 1 8.5839 6.2974 11.8788 47 1 2.9991 4.1859 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733971547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:57 Heat of formation + Delta-G solvation = -84.787869 kcal Electronic energy + Delta-G solvation = -28456.736044 eV Core-core repulsion = 24253.868243 eV Total energy + Delta-G solvation = -4202.867801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.50035 -41.01657 -40.16347 -38.59809 -36.14576 -36.03539 -35.37002 -34.84682 -33.27376 -32.07929 -30.54871 -30.00697 -27.99875 -26.25495 -25.88991 -25.26876 -24.39727 -22.33841 -21.52528 -21.16078 -20.78340 -19.93426 -19.37465 -17.94214 -17.81451 -17.49774 -17.18095 -16.88692 -16.41258 -16.17770 -16.01401 -15.74037 -15.64397 -15.44402 -15.14275 -14.99697 -14.73708 -14.44510 -14.11109 -13.90594 -13.57913 -13.50445 -13.35388 -13.19613 -13.08589 -12.88186 -12.62864 -12.58905 -12.41165 -12.37711 -12.12287 -12.04441 -11.96073 -11.92719 -11.84517 -11.49982 -11.37195 -10.38716 -10.27820 -10.00901 -10.00676 -9.33141 -8.46275 -5.94793 0.02629 0.90896 1.38286 1.42115 1.53533 1.54995 1.93799 2.06146 2.16921 2.30190 2.77624 2.98951 3.21162 3.53407 3.62717 3.74168 3.78358 3.87273 4.19200 4.21699 4.26402 4.29311 4.36242 4.41617 4.45985 4.52204 4.56370 4.61178 4.63944 4.71234 4.83070 4.93258 4.96351 5.00250 5.05170 5.06582 5.18539 5.35608 5.37558 5.40985 5.42077 5.87746 6.08639 6.25499 6.39261 6.55080 6.60799 7.04468 7.13284 7.57047 8.12459 8.71074 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026532 B = 0.001721 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.056476 B =16269.888501 C =16703.857831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.203 3.797 4 N -0.480 5.480 5 C -0.100 4.100 6 C 0.600 3.400 7 O -0.569 6.569 8 N -0.695 5.695 9 C 0.159 3.841 10 H 0.071 0.929 11 C -0.156 4.156 12 C 0.085 3.915 13 H 0.089 0.911 14 C -0.183 4.183 15 N -0.673 5.673 16 C 0.067 3.933 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.274 1.274 28 C 0.025 3.975 29 O -0.195 6.195 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.350 0.650 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.397 0.603 46 H 0.277 0.723 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 -19.056 -22.887 32.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.006 4.006 4 N -0.210 5.210 5 C -0.219 4.219 6 C 0.386 3.614 7 O -0.449 6.449 8 N -0.347 5.347 9 C 0.054 3.946 10 H 0.089 0.911 11 C -0.214 4.214 12 C -0.025 4.025 13 H 0.107 0.893 14 C -0.242 4.242 15 N -0.306 5.306 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.050 4.050 29 O -0.081 6.081 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.170 0.830 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.713 -17.606 -22.952 32.012 hybrid contribution 0.096 0.036 0.854 0.860 sum -13.617 -17.570 -22.098 31.344 Atomic orbital electron populations 1.21789 0.92348 1.04307 1.02216 1.20421 0.97261 0.81661 1.07168 1.27224 0.97831 0.97912 0.77668 1.70716 1.16848 1.02500 1.30976 1.21688 1.11963 0.94517 0.93695 1.16994 0.76903 0.85102 0.82402 1.90824 1.49412 1.28686 1.75972 1.45876 1.66199 1.17838 1.04829 1.20760 0.97542 0.86976 0.89350 0.91076 1.22089 0.97835 0.99822 1.01630 1.21674 0.99053 0.90671 0.91147 0.89277 1.22550 0.99116 1.00592 1.01952 1.59954 1.17331 1.33313 1.19998 1.21552 0.98588 0.93986 0.92425 1.20876 0.82543 0.90705 0.83349 1.90497 1.54393 1.31159 1.74835 1.41921 1.40010 1.13916 1.25192 1.19672 1.25446 0.93499 1.07758 0.90343 1.26030 0.95657 1.00558 0.99019 1.69672 1.29547 1.25258 1.31605 0.84931 0.77924 0.77615 0.77879 1.19537 1.19574 1.19927 1.25744 0.96886 0.86968 0.95356 1.84438 1.63341 1.22248 1.38066 0.93015 0.92435 0.88616 0.86347 0.86292 0.74677 0.91051 0.91245 0.93569 0.90388 0.91644 0.91431 0.83008 0.90987 0.87971 0.76950 0.91317 0.73158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.90 71.98 0.71 0.03 16 2 C -0.03 -0.15 6.56 29.85 0.20 0.05 16 3 C 0.20 2.82 7.56 88.39 0.67 3.49 16 4 N -0.48 -8.97 11.06 -293.02 -3.24 -12.21 16 5 C -0.10 -2.10 6.99 40.41 0.28 -1.81 16 6 C 0.60 15.26 7.78 86.66 0.67 15.93 16 7 O -0.57 -18.04 16.55 -4.06 -0.07 -18.11 16 8 N -0.70 -15.37 4.99 -445.79 -2.22 -17.59 16 9 C 0.16 3.96 2.63 44.99 0.12 4.08 16 10 H 0.07 2.19 7.58 -2.39 -0.02 2.18 16 11 C -0.16 -3.87 8.86 71.98 0.64 -3.23 16 12 C 0.09 1.97 2.64 44.92 0.12 2.09 16 13 H 0.09 1.99 7.80 -2.39 -0.02 1.97 16 14 C -0.18 -3.29 8.68 71.98 0.62 -2.67 16 15 N -0.67 -20.78 5.23 -495.56 -2.59 -23.37 16 16 C 0.07 2.24 5.97 85.56 0.51 2.75 16 17 C 0.44 20.82 7.82 87.66 0.69 21.51 16 18 O -0.62 -34.63 15.78 -3.07 -0.05 -34.68 16 19 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 20 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.02 0.40 11.95 67.32 0.80 1.20 16 29 O -0.19 -2.84 10.73 0.31 0.00 -2.84 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.41 7.67 6.30 -92.71 -0.58 7.08 16 36 H 0.07 1.50 6.56 -2.39 -0.02 1.48 16 37 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.11 6.29 -2.39 -0.02 1.10 16 40 H 0.06 1.18 7.45 -2.39 -0.02 1.16 16 41 H 0.07 1.21 6.55 -2.39 -0.02 1.20 16 42 H 0.35 11.21 7.39 -89.70 -0.66 10.55 16 43 H 0.07 2.06 7.44 -2.39 -0.02 2.05 16 44 H 0.10 3.15 8.05 -2.39 -0.02 3.13 16 45 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 46 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.25 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -75.11 394.87 -1.11 -76.22 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.94 Total: 42.98 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 7.31 Total: 24.88 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -9.39 Total: -133.75 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.11 Total: -55.63 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -75.11 -1.11 -76.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733971547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.569 kcal (2) G-P(sol) polarization free energy of solvation -75.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds