Wall clock time and date at job start Tue Mar 31 2020 20:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46921 * 2 1 4 4 N 1.29930 * 125.37737 * 90.00622 * 3 2 1 5 5 C 1.36067 * 108.47739 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.45028 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00018 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00260 * 0.02562 * 6 5 4 9 9 C 1.46506 * 120.00614 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46379 * 324.99979 * 9 8 6 11 11 C 1.53002 * 109.47040 * 84.99628 * 9 8 6 12 12 C 1.52999 * 109.47075 * 205.00168 * 9 8 6 13 13 H 1.08996 * 109.46929 * 299.99044 * 12 9 8 14 14 C 1.52997 * 109.47317 * 59.99940 * 12 9 8 15 15 N 1.46906 * 109.46507 * 179.97438 * 12 9 8 16 16 C 1.46904 * 110.99716 * 154.99875 * 15 12 9 17 17 C 1.50700 * 109.47105 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99799 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99668 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99955 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00105 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47135 * 59.99583 * 24 22 20 26 26 H 1.48503 * 109.47208 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46889 * 299.99762 * 24 22 20 28 28 C 1.36091 * 107.10147 * 0.25860 * 5 4 3 29 29 O 1.34053 * 125.37563 * 269.95677 * 3 2 1 30 30 H 1.08996 * 109.47192 * 59.99624 * 1 2 3 31 31 H 1.08995 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46804 * 300.00090 * 1 2 3 33 33 H 1.09000 * 109.47098 * 240.00102 * 2 1 3 34 34 H 1.08998 * 109.47302 * 119.99847 * 2 1 3 35 35 H 0.97000 * 119.99625 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46838 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.47142 * 300.00370 * 11 9 8 38 38 H 1.08996 * 109.46698 * 60.00424 * 11 9 8 39 39 H 1.09002 * 109.47153 * 299.99641 * 14 12 9 40 40 H 1.09001 * 109.46832 * 179.97438 * 14 12 9 41 41 H 1.09004 * 109.47261 * 59.99813 * 14 12 9 42 42 H 1.00900 * 110.99634 * 278.94600 * 15 12 9 43 43 H 1.08996 * 109.46868 * 300.00084 * 16 15 12 44 44 H 1.09007 * 109.46973 * 59.99616 * 16 15 12 45 45 H 0.96997 * 120.00718 * 0.02562 * 19 17 16 46 46 H 0.96993 * 119.99702 * 180.02562 * 23 22 20 47 47 H 1.08005 * 126.52365 * 179.73807 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7176 3.3573 0.6638 6 6 3.1116 4.4725 1.5438 7 8 3.4838 5.5252 1.0618 8 7 3.0593 4.3255 2.8825 9 6 3.4503 5.4339 3.7571 10 1 4.2705 5.9864 3.2986 11 6 2.2563 6.3689 3.9602 12 6 3.9012 4.8810 5.1105 13 1 3.0810 4.3287 5.5688 14 6 5.0952 3.9461 4.9073 15 7 4.2939 5.9925 5.9871 16 6 4.1617 5.6192 7.4018 17 6 4.5729 6.7814 8.2686 18 8 4.9395 7.8188 7.7581 19 7 4.5322 6.6683 9.6109 20 6 4.9058 7.7258 10.3995 21 1 5.2322 8.6494 9.9450 22 6 4.8644 7.6091 11.7835 23 7 4.4667 6.4853 12.3365 24 14 5.3728 9.0502 12.8579 25 1 4.4982 10.2152 12.5697 26 1 5.2388 8.6729 14.2879 27 1 6.7850 9.4082 12.5701 28 6 2.7138 3.3638 -0.6970 29 8 2.2918 2.1523 -1.0930 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.7628 3.4858 3.2669 36 1 2.5471 7.1933 4.6112 37 1 1.9351 6.7628 2.9959 38 1 1.4361 5.8164 4.4185 39 1 4.8043 3.1214 4.2566 40 1 5.4167 3.5526 5.8716 41 1 5.9155 4.4986 4.4489 42 1 5.2319 6.3016 5.7809 43 1 3.1250 5.3568 7.6129 44 1 4.8032 4.7637 7.6133 45 1 4.2387 5.8389 10.0192 46 1 4.4375 6.4040 13.3026 47 1 2.9990 4.1859 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733971551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:06 Heat of formation + Delta-G solvation = -59.690775 kcal Electronic energy + Delta-G solvation = -28442.801449 eV Core-core repulsion = 24241.021940 eV Total energy + Delta-G solvation = -4201.779510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.84825 -39.94443 -38.42835 -37.18907 -35.47301 -34.51826 -34.38757 -33.77901 -31.27607 -30.80063 -29.86957 -29.48271 -26.32058 -25.10450 -24.71643 -24.15585 -22.95495 -21.65147 -20.68501 -20.59895 -19.26099 -18.47221 -17.88730 -17.26190 -16.86855 -16.41856 -15.92769 -15.36690 -15.18516 -15.07188 -14.98098 -14.56307 -14.40756 -14.06799 -13.87654 -13.75847 -13.68022 -13.45724 -13.24880 -13.02925 -12.35606 -12.34137 -12.19801 -12.12486 -11.79313 -11.65748 -11.56170 -11.52462 -11.44405 -11.26688 -11.24208 -11.00490 -10.66824 -10.43312 -10.35789 -10.20058 -9.48900 -9.47565 -9.18698 -8.45376 -8.04775 -7.94657 -6.40631 -3.81402 0.73455 1.61089 2.13331 2.83519 3.06343 3.21295 3.26800 3.31441 3.40987 3.92106 4.12185 4.30526 4.32239 4.44171 4.54434 4.57949 4.68486 4.79218 4.94781 5.14266 5.15222 5.16327 5.20150 5.22230 5.28124 5.37240 5.46420 5.52341 5.55925 5.68150 5.69672 5.71871 5.85408 5.92895 6.02224 6.07147 6.11204 6.26082 6.39317 6.57044 7.01025 7.18408 7.38182 7.56254 7.64067 7.98194 8.07275 8.62374 9.18998 9.55396 10.06918 10.77041 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.001735 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.430098 B =16138.091126 C =16757.286233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.198 3.802 4 N -0.459 5.459 5 C -0.070 4.070 6 C 0.602 3.398 7 O -0.535 6.535 8 N -0.704 5.704 9 C 0.153 3.847 10 H 0.091 0.909 11 C -0.152 4.152 12 C 0.078 3.922 13 H 0.082 0.918 14 C -0.185 4.185 15 N -0.657 5.657 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.011 3.989 29 O -0.196 6.196 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.353 0.647 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 -17.011 -24.663 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.011 4.011 4 N -0.190 5.190 5 C -0.190 4.190 6 C 0.387 3.613 7 O -0.412 6.412 8 N -0.354 5.354 9 C 0.048 3.952 10 H 0.109 0.891 11 C -0.211 4.211 12 C -0.033 4.033 13 H 0.100 0.900 14 C -0.244 4.244 15 N -0.289 5.289 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.063 4.063 29 O -0.082 6.082 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.241 0.759 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.186 -15.489 -24.514 29.874 hybrid contribution 0.786 -0.611 0.522 1.124 sum -6.399 -16.100 -23.992 29.594 Atomic orbital electron populations 1.21801 0.92810 1.03245 1.03132 1.20140 0.97057 0.83833 1.05523 1.26381 0.99391 0.97007 0.78295 1.70754 1.15662 1.02600 1.29944 1.21859 1.09699 0.94338 0.93118 1.16683 0.77629 0.84999 0.81974 1.90847 1.47819 1.27169 1.75353 1.45869 1.66535 1.17827 1.05212 1.20962 0.98527 0.86760 0.88920 0.89093 1.22043 0.96903 1.00325 1.01795 1.21738 0.97488 0.91174 0.92948 0.89968 1.22541 0.99198 1.00475 1.02142 1.60003 1.33360 1.33496 1.02084 1.21693 1.01691 0.96412 0.88218 1.19797 0.85066 0.89462 0.83062 1.90532 1.52269 1.30462 1.73354 1.41851 1.58334 1.15705 1.04156 1.19659 1.41010 0.94663 0.87569 0.87960 1.25260 0.97422 0.98017 0.97247 1.69605 1.47441 1.25354 1.11974 0.85915 0.79264 0.80783 0.78242 1.19885 1.21004 1.19931 1.25315 0.98699 0.86511 0.95761 1.84398 1.63472 1.22427 1.37937 0.92091 0.90664 0.91563 0.88647 0.87306 0.75860 0.89313 0.93079 0.93092 0.92158 0.92170 0.92188 0.82706 0.89560 0.93766 0.77479 0.91847 0.75274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.89 37.16 0.37 -0.16 16 2 C -0.03 -0.11 6.56 -27.88 -0.18 -0.29 16 3 C 0.20 1.54 7.56 -13.08 -0.10 1.44 16 4 N -0.46 -4.53 11.06 -7.65 -0.08 -4.61 16 5 C -0.07 -0.75 6.99 -83.02 -0.58 -1.33 16 6 C 0.60 7.52 7.78 -12.53 -0.10 7.42 16 7 O -0.53 -8.14 16.55 5.26 0.09 -8.05 16 8 N -0.70 -7.84 4.38 -54.88 -0.24 -8.08 16 9 C 0.15 1.89 2.34 -67.93 -0.16 1.73 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 11 C -0.15 -2.01 9.33 37.16 0.35 -1.67 16 12 C 0.08 0.94 2.22 -67.71 -0.15 0.79 16 13 H 0.08 0.93 7.80 -51.93 -0.41 0.53 16 14 C -0.18 -2.01 9.00 37.16 0.33 -1.68 16 15 N -0.66 -10.23 5.11 -107.99 -0.55 -10.78 16 16 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 17 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 18 O -0.58 -15.73 15.78 5.55 0.09 -15.65 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.29 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.01 0.09 11.94 29.96 0.36 0.45 16 29 O -0.20 -1.59 10.73 6.49 0.07 -1.52 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.41 3.97 8.12 -40.82 -0.33 3.64 16 36 H 0.09 1.33 7.60 -51.93 -0.39 0.94 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 40 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 41 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 42 H 0.35 5.81 8.17 -39.29 -0.32 5.48 16 43 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 44 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 45 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 47 H 0.23 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 401.60 15.07 6.05 6.05 Total: -1.00 -33.73 401.60 -6.22 -39.95 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -7.06 Total: 14.89 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.22 Total: 9.79 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.21 Total: -61.59 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.24 Total: -25.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.73 -6.22 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733971551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.740 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds