Wall clock time and date at job start Tue Mar 31 2020 20:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46921 * 2 1 4 4 N 1.29930 * 125.37737 * 90.00622 * 3 2 1 5 5 C 1.36067 * 108.47739 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.45028 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00018 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00260 * 0.02562 * 6 5 4 9 9 C 1.46506 * 120.00614 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46379 * 324.99979 * 9 8 6 11 11 C 1.53002 * 109.47040 * 84.99628 * 9 8 6 12 12 C 1.52999 * 109.47075 * 205.00168 * 9 8 6 13 13 H 1.08996 * 109.46929 * 299.99044 * 12 9 8 14 14 C 1.52997 * 109.47317 * 59.99940 * 12 9 8 15 15 N 1.46906 * 109.46507 * 179.97438 * 12 9 8 16 16 C 1.46904 * 110.99716 * 154.99875 * 15 12 9 17 17 C 1.50700 * 109.47105 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99799 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99763 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99668 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99955 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00105 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99749 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00210 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47135 * 59.99583 * 24 22 20 26 26 H 1.48503 * 109.47208 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46889 * 299.99762 * 24 22 20 28 28 C 1.36091 * 107.10147 * 0.25860 * 5 4 3 29 29 O 1.34053 * 125.37563 * 269.95677 * 3 2 1 30 30 H 1.08996 * 109.47192 * 59.99624 * 1 2 3 31 31 H 1.08995 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46804 * 300.00090 * 1 2 3 33 33 H 1.09000 * 109.47098 * 240.00102 * 2 1 3 34 34 H 1.08998 * 109.47302 * 119.99847 * 2 1 3 35 35 H 0.97000 * 119.99625 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46838 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.47142 * 300.00370 * 11 9 8 38 38 H 1.08996 * 109.46698 * 60.00424 * 11 9 8 39 39 H 1.09002 * 109.47153 * 299.99641 * 14 12 9 40 40 H 1.09001 * 109.46832 * 179.97438 * 14 12 9 41 41 H 1.09004 * 109.47261 * 59.99813 * 14 12 9 42 42 H 1.00900 * 110.99634 * 278.94600 * 15 12 9 43 43 H 1.08996 * 109.46868 * 300.00084 * 16 15 12 44 44 H 1.09007 * 109.46973 * 59.99616 * 16 15 12 45 45 H 0.96997 * 120.00718 * 0.02562 * 19 17 16 46 46 H 0.96993 * 119.99702 * 180.02562 * 23 22 20 47 47 H 1.08005 * 126.52365 * 179.73807 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7176 3.3573 0.6638 6 6 3.1116 4.4725 1.5438 7 8 3.4838 5.5252 1.0618 8 7 3.0593 4.3255 2.8825 9 6 3.4503 5.4339 3.7571 10 1 4.2705 5.9864 3.2986 11 6 2.2563 6.3689 3.9602 12 6 3.9012 4.8810 5.1105 13 1 3.0810 4.3287 5.5688 14 6 5.0952 3.9461 4.9073 15 7 4.2939 5.9925 5.9871 16 6 4.1617 5.6192 7.4018 17 6 4.5729 6.7814 8.2686 18 8 4.9395 7.8188 7.7581 19 7 4.5322 6.6683 9.6109 20 6 4.9058 7.7258 10.3995 21 1 5.2322 8.6494 9.9450 22 6 4.8644 7.6091 11.7835 23 7 4.4667 6.4853 12.3365 24 14 5.3728 9.0502 12.8579 25 1 4.4982 10.2152 12.5697 26 1 5.2388 8.6729 14.2879 27 1 6.7850 9.4082 12.5701 28 6 2.7138 3.3638 -0.6970 29 8 2.2918 2.1523 -1.0930 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.7628 3.4858 3.2669 36 1 2.5471 7.1933 4.6112 37 1 1.9351 6.7628 2.9959 38 1 1.4361 5.8164 4.4185 39 1 4.8043 3.1214 4.2566 40 1 5.4167 3.5526 5.8716 41 1 5.9155 4.4986 4.4489 42 1 5.2319 6.3016 5.7809 43 1 3.1250 5.3568 7.6129 44 1 4.8032 4.7637 7.6133 45 1 4.2387 5.8389 10.0192 46 1 4.4375 6.4040 13.3026 47 1 2.9990 4.1859 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733971551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:06 Heat of formation + Delta-G solvation = -87.520233 kcal Electronic energy + Delta-G solvation = -28444.008225 eV Core-core repulsion = 24241.021940 eV Total energy + Delta-G solvation = -4202.986286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.49506 -40.95674 -40.15036 -38.45074 -36.14006 -36.02627 -35.39510 -34.84422 -33.26377 -31.94750 -30.72973 -30.33310 -27.95085 -25.87199 -25.84718 -25.22043 -23.96878 -22.30991 -21.74228 -21.40574 -21.03495 -19.90843 -19.28467 -17.92723 -17.78541 -17.54268 -17.35454 -16.69434 -16.38344 -16.04084 -15.98502 -15.73265 -15.50482 -15.27088 -15.16960 -14.96470 -14.61114 -14.44261 -14.27456 -13.95862 -13.57581 -13.52880 -13.38731 -13.22116 -12.98958 -12.72866 -12.63839 -12.59082 -12.42125 -12.36454 -12.26867 -12.12041 -12.03786 -11.93257 -11.70787 -11.49073 -11.36585 -10.38419 -10.28176 -10.01141 -9.99899 -9.30572 -8.45562 -5.94010 0.03266 0.91677 1.40396 1.42248 1.52835 1.54275 1.93273 2.07384 2.18023 2.30626 2.77835 3.01478 3.21894 3.54470 3.58085 3.73858 3.75849 4.00545 4.18801 4.21965 4.26670 4.32014 4.36745 4.44344 4.47653 4.54831 4.56887 4.62078 4.65538 4.76861 4.83291 4.94070 4.98811 5.00686 5.05500 5.08158 5.18926 5.32816 5.35987 5.42013 5.46089 5.89293 6.09892 6.26269 6.35782 6.56111 6.61689 7.05366 7.14050 7.58081 8.13715 8.71528 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.001735 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.430098 B =16138.091126 C =16757.286233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C 0.203 3.797 4 N -0.480 5.480 5 C -0.099 4.099 6 C 0.601 3.399 7 O -0.570 6.570 8 N -0.693 5.693 9 C 0.160 3.840 10 H 0.071 0.929 11 C -0.145 4.145 12 C 0.086 3.914 13 H 0.099 0.901 14 C -0.178 4.178 15 N -0.670 5.670 16 C 0.069 3.931 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.024 3.976 29 O -0.195 6.195 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.415 0.585 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.346 0.654 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.397 0.603 46 H 0.277 0.723 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -19.238 -25.135 32.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.007 4.007 4 N -0.210 5.210 5 C -0.218 4.218 6 C 0.388 3.612 7 O -0.449 6.449 8 N -0.343 5.343 9 C 0.055 3.945 10 H 0.089 0.911 11 C -0.204 4.204 12 C -0.025 4.025 13 H 0.117 0.883 14 C -0.237 4.237 15 N -0.302 5.302 16 C -0.064 4.064 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.050 4.050 29 O -0.081 6.081 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.252 0.748 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.165 0.835 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.811 -17.771 -24.971 31.629 hybrid contribution 0.934 0.027 0.567 1.093 sum -6.877 -17.744 -24.404 30.947 Atomic orbital electron populations 1.21789 0.92409 1.04293 1.02199 1.20416 0.97214 0.81702 1.07155 1.27214 0.97875 0.97910 0.77680 1.70721 1.16786 1.02514 1.30936 1.21687 1.11904 0.94510 0.93670 1.16940 0.76910 0.85061 0.82300 1.90823 1.49521 1.28665 1.75937 1.45707 1.66089 1.17715 1.04829 1.20750 0.97517 0.86963 0.89246 0.91087 1.21944 0.97543 0.99972 1.00897 1.21717 0.98512 0.90331 0.91913 0.88258 1.22463 0.98236 1.00361 1.02601 1.59954 1.33081 1.35423 1.01731 1.21546 1.03112 0.93956 0.87752 1.20896 0.83123 0.90555 0.82900 1.90504 1.53655 1.32768 1.74037 1.41912 1.58905 1.15352 1.04867 1.19625 1.43096 0.94990 0.88687 0.90397 1.26017 0.96860 1.00552 0.97813 1.69661 1.47320 1.26506 1.12550 0.85006 0.78744 0.77677 0.77010 1.19846 1.19456 1.19751 1.25743 0.96962 0.86959 0.95385 1.84439 1.63351 1.22264 1.38075 0.92447 0.88631 0.93053 0.86348 0.86296 0.74785 0.91299 0.93957 0.91920 0.90737 0.91764 0.92954 0.83487 0.87485 0.91248 0.76926 0.91315 0.73181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 71.98 0.71 -0.01 16 2 C -0.03 -0.15 6.56 29.85 0.20 0.05 16 3 C 0.20 2.80 7.56 88.39 0.67 3.46 16 4 N -0.48 -8.86 11.06 -293.04 -3.24 -12.10 16 5 C -0.10 -2.04 6.99 40.41 0.28 -1.76 16 6 C 0.60 14.94 7.78 86.66 0.67 15.62 16 7 O -0.57 -17.66 16.55 -4.08 -0.07 -17.73 16 8 N -0.69 -14.96 4.38 -445.79 -1.95 -16.92 16 9 C 0.16 3.93 2.34 44.99 0.11 4.03 16 10 H 0.07 2.06 7.58 -2.39 -0.02 2.05 16 11 C -0.15 -3.85 9.33 71.98 0.67 -3.17 16 12 C 0.09 1.94 2.22 44.91 0.10 2.04 16 13 H 0.10 1.97 7.80 -2.39 -0.02 1.95 16 14 C -0.18 -3.55 9.00 71.98 0.65 -2.91 16 15 N -0.67 -20.42 5.11 -495.56 -2.53 -22.95 16 16 C 0.07 2.25 5.97 85.56 0.51 2.76 16 17 C 0.44 20.62 7.82 87.66 0.69 21.30 16 18 O -0.62 -34.56 15.78 -3.07 -0.05 -34.61 16 19 N -0.57 -29.24 5.29 -306.99 -1.62 -30.86 16 20 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 24 Si 0.99 43.16 29.55 68.60 2.03 45.18 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.02 0.38 11.94 67.32 0.80 1.18 16 29 O -0.20 -2.82 10.73 0.32 0.00 -2.81 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.09 8.14 -2.39 -0.02 0.08 16 32 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.12 0.12 8.14 -2.39 -0.02 0.11 16 34 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.42 7.52 8.12 -92.71 -0.75 6.77 16 36 H 0.07 2.11 7.60 -2.39 -0.02 2.09 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 40 H 0.06 1.25 7.45 -2.39 -0.02 1.24 16 41 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 42 H 0.35 11.43 8.17 -89.69 -0.73 10.70 16 43 H 0.11 3.12 8.06 -2.39 -0.02 3.10 16 44 H 0.07 1.97 7.43 -2.38 -0.02 1.96 16 45 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.25 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -74.25 401.60 -1.01 -75.26 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: -1.19 Total: 42.62 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 7.34 Total: 24.16 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -9.06 Total: -132.06 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.11 Total: -55.16 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.25 -1.01 -75.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733971551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.263 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds