Wall clock time and date at job start Tue Mar 31 2020 20:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47421 * 2 1 4 4 N 1.33698 * 126.27819 * 270.30634 * 3 2 1 5 5 C 1.30611 * 108.99951 * 180.16890 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.56411 * 5 4 3 7 7 C 1.35341 * 107.68327 * 0.26824 * 6 5 4 8 8 C 1.46728 * 126.64287 * 180.02562 * 7 6 5 9 9 O 1.21679 * 119.99941 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99790 * 359.97346 * 8 7 6 11 11 C 1.46498 * 119.99858 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47470 * 35.00011 * 11 10 8 13 13 C 1.53005 * 109.46828 * 274.99879 * 11 10 8 14 14 C 1.53002 * 109.47420 * 155.00040 * 11 10 8 15 15 H 1.08998 * 109.46549 * 294.99890 * 14 11 10 16 16 C 1.52996 * 109.46927 * 54.99522 * 14 11 10 17 17 N 1.46896 * 109.47109 * 174.99776 * 14 11 10 18 18 C 1.46905 * 110.99556 * 154.99946 * 17 14 11 19 19 C 1.50709 * 109.46692 * 179.97438 * 18 17 14 20 20 O 1.21289 * 120.00257 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99670 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99916 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99925 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99844 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00366 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99746 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47113 * 90.00111 * 26 24 22 28 28 H 1.48496 * 109.47007 * 210.00170 * 26 24 22 29 29 H 1.48498 * 109.47320 * 330.00092 * 26 24 22 30 30 H 1.08997 * 109.47017 * 60.00006 * 1 2 3 31 31 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46918 * 300.00208 * 1 2 3 33 33 H 1.09004 * 109.47457 * 240.00157 * 2 1 3 34 34 H 1.09001 * 109.47453 * 120.00160 * 2 1 3 35 35 H 1.08002 * 125.42615 * 179.83678 * 5 4 3 36 36 H 0.96998 * 120.00452 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46763 * 299.99663 * 13 11 10 38 38 H 1.09000 * 109.47098 * 60.00162 * 13 11 10 39 39 H 1.08998 * 109.46620 * 180.02562 * 13 11 10 40 40 H 1.09007 * 109.47100 * 60.00153 * 16 14 11 41 41 H 1.09000 * 109.47108 * 180.02562 * 16 14 11 42 42 H 1.08998 * 109.47443 * 300.00278 * 16 14 11 43 43 H 1.00896 * 111.00190 * 278.95178 * 17 14 11 44 44 H 1.08995 * 109.47232 * 299.99480 * 18 17 14 45 45 H 1.08996 * 109.47370 * 60.00195 * 18 17 14 46 46 H 0.96999 * 120.00024 * 0.02562 * 21 19 18 47 47 H 0.97007 * 120.00266 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2907 2.1685 -1.0778 5 6 2.7118 3.3424 -0.6899 6 8 2.7264 3.3837 0.6461 7 6 2.3013 2.1813 1.0992 8 6 2.1571 1.7751 2.5017 9 8 1.7613 0.6571 2.7737 10 7 2.4630 2.6404 3.4887 11 6 2.3195 2.2346 4.8891 12 1 2.5715 1.1789 4.9891 13 6 0.8746 2.4591 5.3396 14 6 3.2608 3.0684 5.7607 15 1 4.2944 2.8415 5.4991 16 6 2.9900 4.5557 5.5256 17 7 3.0317 2.7465 7.1755 18 6 4.2287 3.0270 7.9797 19 6 3.9560 2.6859 9.4221 20 8 2.8715 2.2514 9.7480 21 7 4.9177 2.8626 10.3497 22 6 4.6699 2.5518 11.6617 23 1 3.7042 2.1650 11.9519 24 6 5.6615 2.7335 12.6180 25 7 6.8366 3.2037 12.2649 26 14 5.3240 2.3094 14.4057 27 1 5.6895 0.8919 14.6557 28 1 6.1327 3.1916 15.2849 29 1 3.8816 2.5075 14.6977 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.9982 4.1525 -1.3443 36 1 2.7788 3.5315 3.2720 37 1 0.6228 3.5149 5.2396 38 1 0.2040 1.8651 4.7187 39 1 0.7680 2.1577 6.3816 40 1 1.9564 4.7826 5.7871 41 1 3.6609 5.1497 6.1462 42 1 3.1600 4.7945 4.4758 43 1 2.2304 3.2437 7.5343 44 1 5.0609 2.4250 7.6147 45 1 4.4817 4.0840 7.8983 46 1 5.7851 3.2097 10.0890 47 1 7.5290 3.3302 12.9324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733984390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:14 Heat of formation + Delta-G solvation = -53.248060 kcal Electronic energy + Delta-G solvation = -28868.333773 eV Core-core repulsion = 24666.833640 eV Total energy + Delta-G solvation = -4201.500133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.86228 -40.12956 -38.52933 -37.45467 -36.11043 -34.54763 -33.82832 -33.30723 -31.47993 -31.12571 -29.83146 -29.06416 -26.44867 -25.40194 -24.50244 -24.03285 -23.54494 -21.80299 -20.86057 -19.94405 -19.37583 -18.62969 -17.92606 -17.28706 -16.97221 -16.33008 -16.01521 -15.63968 -15.26587 -15.07389 -14.93202 -14.55522 -14.47282 -14.24414 -13.94736 -13.84716 -13.69686 -13.32575 -13.08766 -13.01886 -12.41134 -12.30763 -12.21313 -11.97632 -11.85521 -11.57259 -11.52483 -11.46023 -11.37037 -11.24877 -11.06892 -11.01909 -10.91339 -10.40578 -10.36627 -10.23280 -9.54315 -9.52549 -9.22266 -8.51097 -8.12389 -7.97999 -6.43393 -3.84190 0.42973 2.02181 2.04419 2.76658 2.83112 3.17078 3.25861 3.31590 3.59774 3.88431 4.07467 4.27536 4.29848 4.36702 4.65606 4.72225 4.92576 5.00937 5.03563 5.09763 5.12408 5.14539 5.23899 5.29109 5.31625 5.35809 5.54466 5.62081 5.66447 5.69125 5.73985 5.80501 5.87207 5.88827 5.93912 5.97877 6.03186 6.22300 6.26456 6.33839 6.98029 7.11201 7.23186 7.53788 7.57082 7.76015 8.04434 8.59169 9.16208 9.52262 10.03461 10.74262 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.001812 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.047382 B =15450.468106 C =15870.781839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C 0.083 3.917 4 N -0.492 5.492 5 C 0.200 3.800 6 O -0.193 6.193 7 C -0.113 4.113 8 C 0.608 3.392 9 O -0.506 6.506 10 N -0.713 5.713 11 C 0.153 3.847 12 H 0.101 0.899 13 C -0.164 4.164 14 C 0.078 3.922 15 H 0.084 0.916 16 C -0.190 4.190 17 N -0.657 5.657 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.256 0.744 36 H 0.401 0.599 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.353 0.647 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 3.544 -26.393 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.040 4.040 4 N -0.220 5.220 5 C -0.025 4.025 6 O -0.079 6.079 7 C -0.168 4.168 8 C 0.393 3.607 9 O -0.383 6.383 10 N -0.365 5.365 11 C 0.049 3.951 12 H 0.119 0.881 13 C -0.222 4.222 14 C -0.034 4.034 15 H 0.102 0.898 16 C -0.249 4.249 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.272 0.728 36 H 0.238 0.762 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.075 1.704 -26.455 27.438 hybrid contribution 0.916 2.024 1.089 2.475 sum -6.158 3.729 -25.366 26.368 Atomic orbital electron populations 1.21634 0.93683 1.02450 1.01959 1.20192 0.96748 0.87644 1.04555 1.22102 0.97420 0.98226 0.86289 1.70354 1.16921 1.03279 1.31486 1.28353 0.97105 0.97661 0.79383 1.84488 1.64789 1.34053 1.24525 1.23024 1.12173 0.85191 0.96439 1.16290 0.78277 0.84914 0.81243 1.90890 1.46266 1.19475 1.81669 1.46140 1.66999 1.16830 1.06514 1.21008 0.95940 1.00700 0.77446 0.88081 1.22190 0.95300 1.01451 1.03267 1.21714 0.99280 0.92513 0.89863 0.89820 1.22629 1.02920 0.97679 1.01674 1.60014 1.06236 1.63351 0.99422 1.21711 0.93488 0.99315 0.93626 1.19781 0.86096 0.85188 0.86379 1.90528 1.24695 1.50058 1.81376 1.41858 1.13691 1.57138 1.07301 1.19705 1.00510 1.40255 0.82404 0.87888 1.25267 0.94943 0.97186 1.00577 1.69608 1.03885 1.45432 1.35385 0.85851 0.78545 0.78289 0.81571 1.20369 1.20956 1.19419 0.92790 0.91533 0.92329 0.90019 0.88009 0.72791 0.76228 0.92774 0.92399 0.89672 0.91526 0.91801 0.92557 0.82577 0.89516 0.93723 0.77477 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.50 5.92 -27.89 -0.17 -0.67 16 3 C 0.08 0.86 6.41 -82.46 -0.53 0.34 16 4 N -0.49 -4.63 11.26 -10.88 -0.12 -4.76 16 5 C 0.20 1.25 13.21 52.24 0.69 1.94 16 6 O -0.19 -1.55 10.57 4.42 0.05 -1.50 16 7 C -0.11 -1.16 7.18 -36.84 -0.26 -1.42 16 8 C 0.61 6.91 7.75 -12.83 -0.10 6.81 16 9 O -0.51 -7.00 14.46 5.21 0.08 -6.92 16 10 N -0.71 -6.86 4.98 -55.10 -0.27 -7.14 16 11 C 0.15 1.71 2.63 -67.93 -0.18 1.53 16 12 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 13 C -0.16 -1.83 8.87 37.16 0.33 -1.50 16 14 C 0.08 0.86 2.64 -67.72 -0.18 0.68 16 15 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 16 C -0.19 -1.70 8.68 37.16 0.32 -1.38 16 17 N -0.66 -9.75 5.23 -107.99 -0.56 -10.31 16 18 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 19 C 0.44 10.13 7.82 -10.98 -0.09 10.04 16 20 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 21 N -0.56 -14.05 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 26 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.06 6.47 -51.93 -0.34 0.72 16 35 H 0.26 0.18 8.06 -52.49 -0.42 -0.24 16 36 H 0.40 3.10 6.37 -40.82 -0.26 2.84 16 37 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 40 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 41 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 42 H 0.06 0.39 6.29 -51.93 -0.33 0.06 16 43 H 0.35 5.41 7.39 -39.29 -0.29 5.12 16 44 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 45 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 46 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -33.42 390.85 -5.91 -39.33 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.62 Total: 14.18 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.06 Total: 8.42 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.30 Total: -59.92 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.21 Total: -23.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.42 -5.91 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.919 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds