Wall clock time and date at job start Tue Mar 31 2020 20:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47421 * 2 1 4 4 N 1.33698 * 126.27819 * 270.30634 * 3 2 1 5 5 C 1.30611 * 108.99951 * 180.16890 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.56411 * 5 4 3 7 7 C 1.35341 * 107.68327 * 0.26824 * 6 5 4 8 8 C 1.46728 * 126.64287 * 180.02562 * 7 6 5 9 9 O 1.21679 * 119.99941 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99790 * 359.97346 * 8 7 6 11 11 C 1.46498 * 119.99858 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47470 * 35.00011 * 11 10 8 13 13 C 1.53005 * 109.46828 * 274.99879 * 11 10 8 14 14 C 1.53002 * 109.47420 * 155.00040 * 11 10 8 15 15 H 1.08998 * 109.46549 * 294.99890 * 14 11 10 16 16 C 1.52996 * 109.46927 * 54.99522 * 14 11 10 17 17 N 1.46896 * 109.47109 * 174.99776 * 14 11 10 18 18 C 1.46905 * 110.99556 * 154.99946 * 17 14 11 19 19 C 1.50709 * 109.46692 * 179.97438 * 18 17 14 20 20 O 1.21289 * 120.00257 * 0.02562 * 19 18 17 21 21 N 1.34774 * 119.99670 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99916 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99925 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99844 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00366 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99746 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47113 * 90.00111 * 26 24 22 28 28 H 1.48496 * 109.47007 * 210.00170 * 26 24 22 29 29 H 1.48498 * 109.47320 * 330.00092 * 26 24 22 30 30 H 1.08997 * 109.47017 * 60.00006 * 1 2 3 31 31 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46918 * 300.00208 * 1 2 3 33 33 H 1.09004 * 109.47457 * 240.00157 * 2 1 3 34 34 H 1.09001 * 109.47453 * 120.00160 * 2 1 3 35 35 H 1.08002 * 125.42615 * 179.83678 * 5 4 3 36 36 H 0.96998 * 120.00452 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46763 * 299.99663 * 13 11 10 38 38 H 1.09000 * 109.47098 * 60.00162 * 13 11 10 39 39 H 1.08998 * 109.46620 * 180.02562 * 13 11 10 40 40 H 1.09007 * 109.47100 * 60.00153 * 16 14 11 41 41 H 1.09000 * 109.47108 * 180.02562 * 16 14 11 42 42 H 1.08998 * 109.47443 * 300.00278 * 16 14 11 43 43 H 1.00896 * 111.00190 * 278.95178 * 17 14 11 44 44 H 1.08995 * 109.47232 * 299.99480 * 18 17 14 45 45 H 1.08996 * 109.47370 * 60.00195 * 18 17 14 46 46 H 0.96999 * 120.00024 * 0.02562 * 21 19 18 47 47 H 0.97007 * 120.00266 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2907 2.1685 -1.0778 5 6 2.7118 3.3424 -0.6899 6 8 2.7264 3.3837 0.6461 7 6 2.3013 2.1813 1.0992 8 6 2.1571 1.7751 2.5017 9 8 1.7613 0.6571 2.7737 10 7 2.4630 2.6404 3.4887 11 6 2.3195 2.2346 4.8891 12 1 2.5715 1.1789 4.9891 13 6 0.8746 2.4591 5.3396 14 6 3.2608 3.0684 5.7607 15 1 4.2944 2.8415 5.4991 16 6 2.9900 4.5557 5.5256 17 7 3.0317 2.7465 7.1755 18 6 4.2287 3.0270 7.9797 19 6 3.9560 2.6859 9.4221 20 8 2.8715 2.2514 9.7480 21 7 4.9177 2.8626 10.3497 22 6 4.6699 2.5518 11.6617 23 1 3.7042 2.1650 11.9519 24 6 5.6615 2.7335 12.6180 25 7 6.8366 3.2037 12.2649 26 14 5.3240 2.3094 14.4057 27 1 5.6895 0.8919 14.6557 28 1 6.1327 3.1916 15.2849 29 1 3.8816 2.5075 14.6977 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.9982 4.1525 -1.3443 36 1 2.7788 3.5315 3.2720 37 1 0.6228 3.5149 5.2396 38 1 0.2040 1.8651 4.7187 39 1 0.7680 2.1577 6.3816 40 1 1.9564 4.7826 5.7871 41 1 3.6609 5.1497 6.1462 42 1 3.1600 4.7945 4.4758 43 1 2.2304 3.2437 7.5343 44 1 5.0609 2.4250 7.6147 45 1 4.4817 4.0840 7.8983 46 1 5.7851 3.2097 10.0890 47 1 7.5290 3.3302 12.9324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733984390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:13 Heat of formation + Delta-G solvation = -81.346146 kcal Electronic energy + Delta-G solvation = -28869.552198 eV Core-core repulsion = 24666.833640 eV Total energy + Delta-G solvation = -4202.718557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.49366 -41.03716 -40.16406 -38.64070 -36.81731 -36.04053 -35.36994 -33.99736 -33.27777 -32.34154 -30.64752 -29.91700 -27.98932 -26.23598 -25.90745 -24.92409 -24.41899 -22.57407 -21.62216 -21.15647 -20.83097 -19.93619 -19.43182 -17.96185 -17.78563 -17.50204 -17.20774 -16.89398 -16.40684 -16.14039 -15.95261 -15.94550 -15.61754 -15.40569 -15.14243 -14.94486 -14.70853 -14.40294 -14.13710 -13.89686 -13.73522 -13.50329 -13.34749 -13.18612 -13.07911 -12.88493 -12.59581 -12.53260 -12.41110 -12.20936 -12.12036 -12.10546 -11.95887 -11.90122 -11.83632 -11.50041 -11.22166 -10.42724 -10.31261 -10.00668 -9.95419 -9.32224 -8.46239 -5.94587 -0.25692 1.37130 1.38314 1.39609 1.42274 1.54648 1.94404 2.03975 2.06619 2.30311 2.97294 3.10369 3.21383 3.53796 3.59968 3.64672 3.78596 3.88077 4.19910 4.26307 4.30011 4.30377 4.37983 4.42887 4.45448 4.46768 4.53103 4.62481 4.69383 4.76902 4.82433 4.94587 4.97295 4.98823 5.07744 5.18905 5.19684 5.29853 5.37475 5.41382 5.42224 5.88238 6.09024 6.25037 6.40059 6.55108 6.60956 6.94855 7.13560 7.57476 8.12863 8.71030 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.001812 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.047382 B =15450.468106 C =15870.781839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 C 0.076 3.924 4 N -0.524 5.524 5 C 0.229 3.771 6 O -0.190 6.190 7 C -0.133 4.133 8 C 0.607 3.393 9 O -0.540 6.540 10 N -0.698 5.698 11 C 0.161 3.839 12 H 0.074 0.926 13 C -0.157 4.157 14 C 0.084 3.916 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.673 5.673 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.309 0.691 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.350 0.650 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 5.367 -28.030 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.047 4.047 4 N -0.252 5.252 5 C 0.004 3.996 6 O -0.077 6.077 7 C -0.189 4.189 8 C 0.393 3.607 9 O -0.419 6.419 10 N -0.351 5.351 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.215 4.215 14 C -0.027 4.027 15 H 0.109 0.891 16 C -0.243 4.243 17 N -0.307 5.307 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.324 0.676 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.170 0.830 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.264 3.556 -28.126 29.033 hybrid contribution 0.661 1.488 1.451 2.181 sum -5.603 5.044 -26.674 27.719 Atomic orbital electron populations 1.21578 0.93180 1.03044 1.01281 1.20184 0.97178 0.87719 1.04214 1.22267 0.97038 0.98543 0.86854 1.70380 1.18828 1.04625 1.31393 1.29609 0.93344 0.97635 0.78971 1.84493 1.64823 1.32934 1.25414 1.22659 1.14227 0.86275 0.95708 1.16452 0.77729 0.84581 0.81988 1.90872 1.47806 1.20884 1.82360 1.45929 1.66548 1.17149 1.05506 1.20767 0.95929 0.99352 0.78374 0.90804 1.22102 0.95190 1.02338 1.01885 1.21696 0.99518 0.94101 0.87356 0.89091 1.22567 1.03018 0.95421 1.03340 1.59946 1.05412 1.64187 1.01105 1.21548 0.94593 1.01104 0.89257 1.20908 0.84877 0.83131 0.88606 1.90499 1.26304 1.51386 1.82716 1.41926 1.14360 1.57814 1.06986 1.19655 1.00151 1.42141 0.84289 0.90358 1.26023 0.94570 0.96586 1.04151 1.69664 1.04298 1.45399 1.36718 0.84942 0.78234 0.78349 0.76902 1.19817 1.19515 1.19769 0.92346 0.90373 0.93924 0.89071 0.89526 0.67598 0.74775 0.90943 0.93438 0.91352 0.91420 0.91757 0.90052 0.83009 0.87915 0.90979 0.76948 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.06 -1.05 5.92 29.85 0.18 -0.87 16 3 C 0.08 1.53 6.41 41.83 0.27 1.80 16 4 N -0.52 -8.86 11.26 -303.13 -3.41 -12.27 16 5 C 0.23 2.10 13.21 130.42 1.72 3.82 16 6 O -0.19 -2.57 10.57 -7.09 -0.07 -2.64 16 7 C -0.13 -2.61 7.18 24.05 0.17 -2.44 16 8 C 0.61 13.73 7.75 86.46 0.67 14.40 16 9 O -0.54 -15.56 14.46 -4.28 -0.06 -15.63 16 10 N -0.70 -12.71 4.98 -446.45 -2.23 -14.94 16 11 C 0.16 3.52 2.63 44.99 0.12 3.64 16 12 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 13 C -0.16 -3.50 8.87 71.98 0.64 -2.86 16 14 C 0.08 1.71 2.64 44.92 0.12 1.83 16 15 H 0.09 1.77 7.80 -2.39 -0.02 1.75 16 16 C -0.18 -2.78 8.68 71.98 0.62 -2.15 16 17 N -0.67 -19.51 5.23 -495.57 -2.59 -22.11 16 18 C 0.07 2.16 5.97 85.56 0.51 2.67 16 19 C 0.44 20.31 7.82 87.66 0.69 21.00 16 20 O -0.62 -34.00 15.78 -3.06 -0.05 -34.05 16 21 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 22 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 25 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 26 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.09 1.91 6.47 -2.39 -0.02 1.89 16 35 H 0.31 -1.17 8.06 -2.91 -0.02 -1.19 16 36 H 0.41 5.40 6.37 -92.71 -0.59 4.81 16 37 H 0.07 1.33 6.56 -2.39 -0.02 1.31 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.77 7.13 -2.39 -0.02 1.75 16 40 H 0.07 1.03 6.55 -2.38 -0.02 1.02 16 41 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 42 H 0.08 0.83 6.29 -2.39 -0.02 0.81 16 43 H 0.35 10.60 7.39 -89.70 -0.66 9.94 16 44 H 0.10 3.01 8.05 -2.39 -0.02 2.99 16 45 H 0.07 1.95 7.44 -2.39 -0.02 1.93 16 46 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 47 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -75.06 390.85 -0.97 -76.04 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.95 Total: 39.31 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 7.70 Total: 20.99 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -9.57 Total: -128.92 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.19 Total: -52.32 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.06 -0.97 -76.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.308 kcal (2) G-P(sol) polarization free energy of solvation -75.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds