Wall clock time and date at job start Tue Mar 31 2020 20:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47175 * 2 1 4 4 N 1.33691 * 126.26972 * 270.03970 * 3 2 1 5 5 C 1.30615 * 108.99088 * 179.97438 * 4 3 2 6 6 O 1.33667 * 109.15611 * 359.73231 * 5 4 3 7 7 C 1.35342 * 107.68112 * 0.43492 * 6 5 4 8 8 C 1.46724 * 126.64105 * 179.84242 * 7 6 5 9 9 O 1.21681 * 120.00154 * 179.68376 * 8 7 6 10 10 N 1.34775 * 120.00183 * 359.68249 * 8 7 6 11 11 C 1.46503 * 120.00091 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46807 * 324.99746 * 11 10 8 13 13 C 1.52998 * 109.46969 * 85.00295 * 11 10 8 14 14 C 1.53002 * 109.46849 * 204.99890 * 11 10 8 15 15 H 1.09002 * 109.47070 * 65.00067 * 14 11 10 16 16 C 1.53000 * 109.47233 * 304.99693 * 14 11 10 17 17 N 1.46901 * 109.46860 * 185.00217 * 14 11 10 18 18 C 1.46903 * 110.99880 * 205.00557 * 17 14 11 19 19 C 1.50697 * 109.46959 * 180.02562 * 18 17 14 20 20 O 1.21293 * 120.00499 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99745 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00042 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99673 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00330 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99357 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00081 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47215 * 60.00559 * 26 24 22 28 28 H 1.48502 * 109.47064 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47513 * 300.00246 * 26 24 22 30 30 H 1.09005 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47172 * 299.99673 * 1 2 3 32 32 H 1.09000 * 109.47237 * 59.99849 * 1 2 3 33 33 H 1.08996 * 109.46999 * 239.99866 * 2 1 3 34 34 H 1.09006 * 109.46854 * 120.00226 * 2 1 3 35 35 H 1.08000 * 125.42378 * 180.02562 * 5 4 3 36 36 H 0.97002 * 119.99909 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47805 * 60.00062 * 13 11 10 38 38 H 1.09003 * 109.46952 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.47027 * 299.99535 * 13 11 10 40 40 H 1.08992 * 109.47399 * 300.00166 * 16 14 11 41 41 H 1.09004 * 109.46724 * 60.00652 * 16 14 11 42 42 H 1.09001 * 109.47194 * 179.97438 * 16 14 11 43 43 H 1.00892 * 111.00435 * 81.04393 * 17 14 11 44 44 H 1.09003 * 109.46525 * 299.99167 * 18 17 14 45 45 H 1.08991 * 109.47692 * 59.99249 * 18 17 14 46 46 H 0.97000 * 119.99778 * 359.97438 * 21 19 18 47 47 H 0.97003 * 119.99448 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2953 2.1667 -1.0779 5 6 2.7108 3.3427 -0.6899 6 8 2.7203 3.3858 0.6460 7 6 2.3015 2.1812 1.0991 8 6 2.1585 1.7746 2.5016 9 8 1.7637 0.6563 2.7737 10 7 2.4646 2.6398 3.4887 11 6 2.3224 2.2337 4.8891 12 1 1.4633 1.5703 4.9895 13 6 3.5880 1.5009 5.3386 14 6 2.1140 3.4735 5.7610 15 1 1.1671 3.9462 5.5002 16 6 3.2588 4.4609 5.5254 17 7 2.0912 3.0789 7.1758 18 6 1.3363 4.0486 7.9807 19 6 1.3353 3.6117 9.4229 20 8 1.9068 2.5925 9.7484 21 7 0.6994 4.3535 10.3513 22 6 0.6980 3.9558 11.6634 23 1 1.2061 3.0478 11.9529 24 6 0.0429 4.7208 12.6206 25 7 -0.5758 5.8252 12.2681 26 14 0.0416 4.1792 14.4083 27 1 1.4395 4.1047 14.9040 28 1 -0.7199 5.1604 15.2223 29 1 -0.5951 2.8423 14.5202 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.9962 4.1530 -1.3443 36 1 2.7790 3.5315 3.2718 37 1 4.4471 2.1642 5.2381 38 1 3.4820 1.1983 6.3804 39 1 3.7364 0.6176 4.7174 40 1 4.2057 3.9883 5.7862 41 1 3.2757 4.7538 4.4756 42 1 3.1102 5.3444 6.1463 43 1 3.0272 2.9625 7.5340 44 1 1.8034 5.0302 7.8992 45 1 0.3105 4.1030 7.6164 46 1 0.2427 5.1688 10.0912 47 1 -1.0335 6.3591 12.9363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733984393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:20 Heat of formation + Delta-G solvation = -53.202979 kcal Electronic energy + Delta-G solvation = -28875.036607 eV Core-core repulsion = 24673.538429 eV Total energy + Delta-G solvation = -4201.498178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.86285 -40.12889 -38.52768 -37.45290 -36.10890 -34.54646 -33.82637 -33.30352 -31.47859 -31.12413 -29.82951 -29.06545 -26.44791 -25.39303 -24.50574 -24.03030 -23.54485 -21.79924 -20.86082 -19.94217 -19.37460 -18.62944 -17.92448 -17.29025 -16.96772 -16.33161 -16.01407 -15.63801 -15.26480 -15.08671 -14.92222 -14.54662 -14.43679 -14.27724 -13.94487 -13.83857 -13.71143 -13.32408 -13.06918 -13.02192 -12.40976 -12.30500 -12.21121 -11.97765 -11.84649 -11.57150 -11.51568 -11.46022 -11.35234 -11.24568 -11.06270 -11.02529 -10.91343 -10.45261 -10.35761 -10.22640 -9.54064 -9.51488 -9.22598 -8.51029 -8.12289 -7.97878 -6.43214 -3.84058 0.43009 2.02213 2.04464 2.76718 2.83076 3.19347 3.25175 3.29661 3.59856 3.88517 4.07543 4.27656 4.29862 4.36801 4.65645 4.72271 4.92838 5.01268 5.03648 5.10436 5.13032 5.14579 5.24027 5.29153 5.31748 5.36205 5.54511 5.62123 5.66853 5.69472 5.74425 5.80545 5.88125 5.88802 5.94029 5.98283 6.03816 6.22370 6.26514 6.33839 6.98035 7.11253 7.23202 7.53750 7.57186 7.76048 8.04327 8.59298 9.16211 9.52288 10.03564 10.74398 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.001822 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.779130 B =15363.952472 C =15640.866729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.083 3.917 4 N -0.492 5.492 5 C 0.200 3.800 6 O -0.193 6.193 7 C -0.113 4.113 8 C 0.608 3.392 9 O -0.506 6.506 10 N -0.713 5.713 11 C 0.153 3.847 12 H 0.101 0.899 13 C -0.164 4.164 14 C 0.078 3.922 15 H 0.084 0.916 16 C -0.190 4.190 17 N -0.657 5.657 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.401 0.599 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 -0.950 -26.385 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.040 4.040 4 N -0.220 5.220 5 C -0.025 4.025 6 O -0.079 6.079 7 C -0.168 4.168 8 C 0.393 3.607 9 O -0.383 6.383 10 N -0.365 5.365 11 C 0.049 3.951 12 H 0.119 0.881 13 C -0.222 4.222 14 C -0.034 4.034 15 H 0.102 0.898 16 C -0.249 4.249 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.272 0.728 36 H 0.238 0.762 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.799 -2.845 -26.447 27.224 hybrid contribution 0.601 2.138 1.091 2.474 sum 6.400 -0.707 -25.356 26.161 Atomic orbital electron populations 1.21641 0.93631 1.02480 1.02028 1.20192 0.96790 0.87630 1.04497 1.22101 0.97366 0.98282 0.86292 1.70357 1.16897 1.03306 1.31475 1.28354 0.97153 0.97612 0.79386 1.84488 1.64983 1.33860 1.24522 1.23020 1.12262 0.85109 0.96438 1.16289 0.78142 0.85053 0.81244 1.90891 1.46397 1.19354 1.81665 1.46143 1.66961 1.16864 1.06515 1.21008 1.00333 0.96307 0.77442 0.88079 1.22191 0.96519 1.00233 1.03281 1.21716 0.98705 0.93086 0.89858 0.89824 1.22628 1.00057 1.00544 1.01673 1.60009 1.21993 1.47607 0.99419 1.21707 0.99359 0.93445 0.93619 1.19779 0.84862 0.86442 0.86377 1.90528 1.48468 1.26274 1.81404 1.41855 1.47256 1.23580 1.07269 1.19657 1.31972 1.08902 0.82400 0.87943 1.25267 0.96506 0.95611 1.00579 1.69605 1.34818 1.14454 1.35448 0.85908 0.78454 0.78301 0.81501 1.19927 1.20993 1.19848 0.91522 0.92273 0.92763 0.90052 0.88043 0.72793 0.76229 0.92760 0.89668 0.92404 0.91522 0.92558 0.91802 0.82575 0.93728 0.89519 0.77474 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.05 -0.50 5.93 -27.88 -0.17 -0.67 16 3 C 0.08 0.86 6.41 -82.47 -0.53 0.34 16 4 N -0.49 -4.64 11.26 -10.89 -0.12 -4.76 16 5 C 0.20 1.25 13.21 52.24 0.69 1.94 16 6 O -0.19 -1.55 10.57 4.42 0.05 -1.50 16 7 C -0.11 -1.16 7.18 -36.84 -0.26 -1.42 16 8 C 0.61 6.91 7.75 -12.83 -0.10 6.81 16 9 O -0.51 -7.00 14.45 5.21 0.08 -6.93 16 10 N -0.71 -6.87 4.98 -55.10 -0.27 -7.14 16 11 C 0.15 1.71 2.63 -67.93 -0.18 1.53 16 12 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 13 C -0.16 -1.83 8.86 37.16 0.33 -1.50 16 14 C 0.08 0.86 2.64 -67.71 -0.18 0.68 16 15 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 16 C -0.19 -1.70 8.68 37.16 0.32 -1.38 16 17 N -0.66 -9.75 5.23 -107.99 -0.56 -10.32 16 18 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 19 C 0.44 10.13 7.82 -10.98 -0.09 10.04 16 20 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 26 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.05 6.47 -51.93 -0.34 0.71 16 35 H 0.26 0.18 8.06 -52.49 -0.42 -0.24 16 36 H 0.40 3.10 6.37 -40.82 -0.26 2.84 16 37 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 38 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 41 H 0.06 0.39 6.29 -51.93 -0.33 0.06 16 42 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 43 H 0.35 5.41 7.39 -39.30 -0.29 5.12 16 44 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 45 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 46 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -33.40 390.85 -5.91 -39.30 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.62 Total: 14.26 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -0.06 Total: 8.38 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.30 Total: -59.93 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.21 Total: -23.83 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.40 -5.91 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.900 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds