Wall clock time and date at job start Tue Mar 31 2020 20:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47175 * 2 1 4 4 N 1.33691 * 126.26972 * 270.03970 * 3 2 1 5 5 C 1.30615 * 108.99088 * 179.97438 * 4 3 2 6 6 O 1.33667 * 109.15611 * 359.73231 * 5 4 3 7 7 C 1.35342 * 107.68112 * 0.43492 * 6 5 4 8 8 C 1.46724 * 126.64105 * 179.84242 * 7 6 5 9 9 O 1.21681 * 120.00154 * 179.68376 * 8 7 6 10 10 N 1.34775 * 120.00183 * 359.68249 * 8 7 6 11 11 C 1.46503 * 120.00091 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46807 * 324.99746 * 11 10 8 13 13 C 1.52998 * 109.46969 * 85.00295 * 11 10 8 14 14 C 1.53002 * 109.46849 * 204.99890 * 11 10 8 15 15 H 1.09002 * 109.47070 * 65.00067 * 14 11 10 16 16 C 1.53000 * 109.47233 * 304.99693 * 14 11 10 17 17 N 1.46901 * 109.46860 * 185.00217 * 14 11 10 18 18 C 1.46903 * 110.99880 * 205.00557 * 17 14 11 19 19 C 1.50697 * 109.46959 * 180.02562 * 18 17 14 20 20 O 1.21293 * 120.00499 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99745 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00042 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99673 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00330 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99357 * 0.02562 * 24 22 21 26 26 Si 1.86791 * 120.00081 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47215 * 60.00559 * 26 24 22 28 28 H 1.48502 * 109.47064 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47513 * 300.00246 * 26 24 22 30 30 H 1.09005 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47172 * 299.99673 * 1 2 3 32 32 H 1.09000 * 109.47237 * 59.99849 * 1 2 3 33 33 H 1.08996 * 109.46999 * 239.99866 * 2 1 3 34 34 H 1.09006 * 109.46854 * 120.00226 * 2 1 3 35 35 H 1.08000 * 125.42378 * 180.02562 * 5 4 3 36 36 H 0.97002 * 119.99909 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47805 * 60.00062 * 13 11 10 38 38 H 1.09003 * 109.46952 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.47027 * 299.99535 * 13 11 10 40 40 H 1.08992 * 109.47399 * 300.00166 * 16 14 11 41 41 H 1.09004 * 109.46724 * 60.00652 * 16 14 11 42 42 H 1.09001 * 109.47194 * 179.97438 * 16 14 11 43 43 H 1.00892 * 111.00435 * 81.04393 * 17 14 11 44 44 H 1.09003 * 109.46525 * 299.99167 * 18 17 14 45 45 H 1.08991 * 109.47692 * 59.99249 * 18 17 14 46 46 H 0.97000 * 119.99778 * 359.97438 * 21 19 18 47 47 H 0.97003 * 119.99448 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2953 2.1667 -1.0779 5 6 2.7108 3.3427 -0.6899 6 8 2.7203 3.3858 0.6460 7 6 2.3015 2.1812 1.0991 8 6 2.1585 1.7746 2.5016 9 8 1.7637 0.6563 2.7737 10 7 2.4646 2.6398 3.4887 11 6 2.3224 2.2337 4.8891 12 1 1.4633 1.5703 4.9895 13 6 3.5880 1.5009 5.3386 14 6 2.1140 3.4735 5.7610 15 1 1.1671 3.9462 5.5002 16 6 3.2588 4.4609 5.5254 17 7 2.0912 3.0789 7.1758 18 6 1.3363 4.0486 7.9807 19 6 1.3353 3.6117 9.4229 20 8 1.9068 2.5925 9.7484 21 7 0.6994 4.3535 10.3513 22 6 0.6980 3.9558 11.6634 23 1 1.2061 3.0478 11.9529 24 6 0.0429 4.7208 12.6206 25 7 -0.5758 5.8252 12.2681 26 14 0.0416 4.1792 14.4083 27 1 1.4395 4.1047 14.9040 28 1 -0.7199 5.1604 15.2223 29 1 -0.5951 2.8423 14.5202 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.9962 4.1530 -1.3443 36 1 2.7790 3.5315 3.2718 37 1 4.4471 2.1642 5.2381 38 1 3.4820 1.1983 6.3804 39 1 3.7364 0.6176 4.7174 40 1 4.2057 3.9883 5.7862 41 1 3.2757 4.7538 4.4756 42 1 3.1102 5.3444 6.1463 43 1 3.0272 2.9625 7.5340 44 1 1.8034 5.0302 7.8992 45 1 0.3105 4.1030 7.6164 46 1 0.2427 5.1688 10.0912 47 1 -1.0335 6.3591 12.9363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733984393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:19 Heat of formation + Delta-G solvation = -81.275835 kcal Electronic energy + Delta-G solvation = -28876.253937 eV Core-core repulsion = 24673.538429 eV Total energy + Delta-G solvation = -4202.715508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.49464 -41.03691 -40.16235 -38.63981 -36.81724 -36.03857 -35.36919 -33.99781 -33.27620 -32.34110 -30.64748 -29.91938 -27.98818 -26.22988 -25.90736 -24.93224 -24.41659 -22.57239 -21.62319 -21.15540 -20.82920 -19.93461 -19.43229 -17.94940 -17.81157 -17.48237 -17.21069 -16.89521 -16.40654 -16.13812 -15.95855 -15.95005 -15.62343 -15.37695 -15.11973 -14.98165 -14.70931 -14.41540 -14.12731 -13.89196 -13.73344 -13.49786 -13.34670 -13.18365 -13.07789 -12.87922 -12.59615 -12.53400 -12.42436 -12.19443 -12.12462 -12.09791 -11.96513 -11.91649 -11.84331 -11.49268 -11.21408 -10.42680 -10.31126 -10.00660 -9.95739 -9.32180 -8.46014 -5.94437 -0.25700 1.37124 1.39589 1.40221 1.42268 1.52903 1.94450 2.03883 2.06731 2.30456 2.97336 3.10405 3.21521 3.53849 3.59960 3.64733 3.78552 3.88101 4.19866 4.26265 4.29922 4.30400 4.37845 4.42895 4.45499 4.46730 4.53154 4.62483 4.69250 4.76978 4.82409 4.94597 4.97147 4.98725 5.07703 5.18842 5.19906 5.29850 5.37528 5.41284 5.42149 5.88229 6.09000 6.24994 6.40135 6.55085 6.61057 6.94839 7.13533 7.57507 8.12906 8.71052 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.001822 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.779130 B =15363.952472 C =15640.866729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C 0.076 3.924 4 N -0.524 5.524 5 C 0.229 3.771 6 O -0.190 6.190 7 C -0.133 4.133 8 C 0.606 3.394 9 O -0.540 6.540 10 N -0.698 5.698 11 C 0.161 3.839 12 H 0.074 0.926 13 C -0.157 4.157 14 C 0.084 3.916 15 H 0.091 0.909 16 C -0.185 4.185 17 N -0.673 5.673 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.309 0.691 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.350 0.650 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 0.961 -28.026 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.047 4.047 4 N -0.252 5.252 5 C 0.004 3.996 6 O -0.077 6.077 7 C -0.189 4.189 8 C 0.392 3.608 9 O -0.419 6.419 10 N -0.351 5.351 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.215 4.215 14 C -0.027 4.027 15 H 0.109 0.891 16 C -0.243 4.243 17 N -0.307 5.307 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.324 0.676 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.170 0.830 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.328 -0.895 -28.121 28.838 hybrid contribution 0.472 1.556 1.452 2.181 sum 6.800 0.662 -26.668 27.530 Atomic orbital electron populations 1.21586 0.93275 1.03045 1.01261 1.20182 0.97084 0.87726 1.04242 1.22265 0.96989 0.98598 0.86856 1.70383 1.18799 1.04655 1.31381 1.29609 0.93383 0.97595 0.78972 1.84493 1.65020 1.32736 1.25413 1.22655 1.14311 0.86191 0.95707 1.16451 0.77590 0.84723 0.81989 1.90872 1.47930 1.20772 1.82356 1.45932 1.66506 1.17186 1.05508 1.20766 0.99218 0.96061 0.78370 0.90812 1.22104 0.97278 1.00253 1.01902 1.21698 1.00224 0.93390 0.87354 0.89110 1.22566 0.98816 0.99625 1.03338 1.59941 1.21732 1.47880 1.01100 1.21545 1.00979 0.94716 0.89258 1.20906 0.82754 0.85273 0.88601 1.90499 1.49692 1.27976 1.82741 1.41925 1.48066 1.24117 1.06962 1.19623 1.33435 1.08975 0.84279 0.90343 1.26027 0.95658 0.95487 1.04163 1.69664 1.34798 1.14863 1.36749 0.85000 0.78561 0.78034 0.76821 1.19649 1.19525 1.19870 0.90364 0.94004 0.92352 0.89024 0.89471 0.67599 0.74775 0.90919 0.91348 0.93429 0.91408 0.90053 0.91762 0.83003 0.90986 0.87924 0.76950 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.05 -1.04 5.93 29.85 0.18 -0.86 16 3 C 0.08 1.53 6.41 41.83 0.27 1.80 16 4 N -0.52 -8.86 11.26 -303.13 -3.41 -12.27 16 5 C 0.23 2.10 13.21 130.42 1.72 3.82 16 6 O -0.19 -2.57 10.57 -7.09 -0.07 -2.64 16 7 C -0.13 -2.61 7.18 24.04 0.17 -2.44 16 8 C 0.61 13.74 7.75 86.46 0.67 14.41 16 9 O -0.54 -15.57 14.45 -4.29 -0.06 -15.63 16 10 N -0.70 -12.72 4.98 -446.46 -2.23 -14.94 16 11 C 0.16 3.52 2.63 44.99 0.12 3.64 16 12 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 13 C -0.16 -3.51 8.86 71.98 0.64 -2.87 16 14 C 0.08 1.72 2.64 44.92 0.12 1.83 16 15 H 0.09 1.77 7.80 -2.39 -0.02 1.75 16 16 C -0.18 -2.78 8.68 71.98 0.62 -2.15 16 17 N -0.67 -19.52 5.23 -495.57 -2.59 -22.11 16 18 C 0.07 2.16 5.97 85.56 0.51 2.67 16 19 C 0.44 20.31 7.82 87.66 0.69 20.99 16 20 O -0.62 -33.99 15.78 -3.07 -0.05 -34.03 16 21 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 22 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 25 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 26 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.90 6.47 -2.38 -0.02 1.89 16 35 H 0.31 -1.17 8.06 -2.91 -0.02 -1.19 16 36 H 0.41 5.40 6.37 -92.71 -0.59 4.81 16 37 H 0.07 1.33 6.56 -2.39 -0.02 1.31 16 38 H 0.07 1.77 7.13 -2.39 -0.02 1.75 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.03 6.55 -2.39 -0.02 1.02 16 41 H 0.08 0.83 6.29 -2.39 -0.02 0.81 16 42 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 43 H 0.35 10.60 7.39 -89.70 -0.66 9.94 16 44 H 0.07 1.95 7.44 -2.39 -0.02 1.93 16 45 H 0.10 3.01 8.05 -2.39 -0.02 2.99 16 46 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 47 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -75.00 390.85 -0.98 -75.97 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.95 Total: 39.51 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 7.70 Total: 20.90 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -9.57 Total: -128.94 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.19 Total: -52.31 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -75.00 -0.98 -75.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.305 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds