Wall clock time and date at job start Tue Mar 31 2020 20:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.46974 * 2 1 4 4 N 1.33698 * 126.27790 * 270.32187 * 3 2 1 5 5 C 1.30611 * 108.99935 * 180.12095 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.60037 * 5 4 3 7 7 C 1.35340 * 107.68343 * 0.24602 * 6 5 4 8 8 C 1.46728 * 126.64345 * 179.97438 * 7 6 5 9 9 O 1.21679 * 119.99974 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99759 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99831 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47242 * 35.00120 * 11 10 8 13 13 C 1.52998 * 109.47284 * 275.00136 * 11 10 8 14 14 C 1.53001 * 109.47224 * 155.00157 * 11 10 8 15 15 H 1.09003 * 109.46723 * 60.00161 * 14 11 10 16 16 C 1.52998 * 109.46973 * 300.00169 * 14 11 10 17 17 N 1.46900 * 109.47239 * 180.02562 * 14 11 10 18 18 C 1.46903 * 110.99792 * 205.00025 * 17 14 11 19 19 C 1.50699 * 109.46932 * 180.02562 * 18 17 14 20 20 O 1.21294 * 120.00238 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99999 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00056 * 180.02562 * 21 19 18 23 23 H 1.08011 * 119.99887 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00079 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00181 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99871 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47178 * 89.99882 * 26 24 22 28 28 H 1.48501 * 109.47339 * 209.99651 * 26 24 22 29 29 H 1.48504 * 109.47528 * 329.99997 * 26 24 22 30 30 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47585 * 299.99791 * 1 2 3 32 32 H 1.09002 * 109.47375 * 60.00121 * 1 2 3 33 33 H 1.09004 * 109.46874 * 240.00313 * 2 1 3 34 34 H 1.08993 * 109.46901 * 120.00211 * 2 1 3 35 35 H 1.08002 * 125.42615 * 179.87304 * 5 4 3 36 36 H 0.96998 * 120.00452 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47389 * 300.00284 * 13 11 10 38 38 H 1.09002 * 109.47230 * 59.99973 * 13 11 10 39 39 H 1.08998 * 109.47440 * 180.02562 * 13 11 10 40 40 H 1.09007 * 109.46946 * 60.00055 * 16 14 11 41 41 H 1.08998 * 109.46779 * 179.97438 * 16 14 11 42 42 H 1.08997 * 109.46968 * 299.99716 * 16 14 11 43 43 H 1.00895 * 111.00245 * 81.04630 * 17 14 11 44 44 H 1.08996 * 109.46987 * 299.99926 * 18 17 14 45 45 H 1.09004 * 109.46861 * 60.00128 * 18 17 14 46 46 H 0.96996 * 119.99876 * 0.02562 * 21 19 18 47 47 H 0.96996 * 120.00264 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2902 2.1686 -1.0778 5 6 2.7104 3.3429 -0.6899 6 8 2.7254 3.3840 0.6461 7 6 2.3011 2.1813 1.0992 8 6 2.1586 1.7745 2.5017 9 8 1.7643 0.6560 2.7737 10 7 2.4644 2.6398 3.4887 11 6 2.3216 2.2338 4.8891 12 1 2.5741 1.1782 4.9889 13 6 0.8768 2.4575 5.3401 14 6 3.2628 3.0680 5.7604 15 1 3.0102 4.1236 5.6606 16 6 4.7076 2.8443 5.3094 17 7 3.1200 2.6605 7.1646 18 6 3.5051 3.7506 8.0708 19 6 3.3465 3.2962 9.4989 20 8 2.9511 2.1748 9.7382 21 7 3.6431 4.1364 10.5103 22 6 3.4993 3.7229 11.8094 23 1 3.1480 2.7240 12.0225 24 6 3.8055 4.5888 12.8521 25 7 4.2334 5.8039 12.5929 26 14 3.6090 4.0256 14.6222 27 1 4.8773 3.4110 15.0899 28 1 3.2789 5.1925 15.4793 29 1 2.5144 3.0253 14.7049 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8932 -0.5138 0.8899 35 1 2.9958 4.1533 -1.3443 36 1 2.7783 3.5316 3.2720 37 1 0.6242 3.5131 5.2403 38 1 0.2062 1.8632 4.7194 39 1 0.7706 2.1559 6.3822 40 1 4.8138 3.1465 4.2674 41 1 5.3780 3.4389 5.9299 42 1 4.9601 1.7887 5.4092 43 1 3.6544 1.8261 7.3551 44 1 4.5448 4.0232 7.8900 45 1 2.8662 4.6153 7.8911 46 1 3.9582 5.0335 10.3189 47 1 4.4476 6.4083 13.3207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733984396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:25 Heat of formation + Delta-G solvation = -56.688891 kcal Electronic energy + Delta-G solvation = -28858.413243 eV Core-core repulsion = 24656.763905 eV Total energy + Delta-G solvation = -4201.649338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.86371 -40.08268 -38.49461 -37.33441 -36.10897 -34.58024 -33.83937 -33.31163 -31.41367 -31.11298 -29.87587 -29.42233 -26.36885 -25.16572 -24.24957 -24.02351 -23.22280 -21.72392 -20.85705 -20.72896 -19.31969 -18.55603 -17.92428 -17.28984 -16.93882 -16.55725 -15.99692 -15.33920 -15.24911 -15.06295 -14.81850 -14.57479 -14.36153 -14.01493 -13.91378 -13.82104 -13.69143 -13.54581 -13.09866 -13.04118 -12.43302 -12.25093 -12.19396 -11.86147 -11.66935 -11.59556 -11.52138 -11.49222 -11.42321 -11.31106 -11.21782 -11.05408 -10.76698 -10.40735 -10.36848 -10.23466 -9.55815 -9.52818 -9.23191 -8.50453 -8.10949 -7.98240 -6.43786 -3.84552 0.42754 2.01907 2.04206 2.76431 2.82056 3.16579 3.25545 3.31645 3.59536 3.88144 4.08079 4.26893 4.30108 4.37236 4.58842 4.84733 4.93250 5.00559 5.07071 5.09242 5.12375 5.14268 5.24111 5.34203 5.38346 5.43717 5.59589 5.63871 5.66125 5.71391 5.78382 5.79720 5.87298 5.94609 5.96597 6.01307 6.02549 6.19658 6.28599 6.48830 6.98432 7.11452 7.22698 7.53470 7.56953 7.75622 8.04092 8.58835 9.15934 9.51895 10.03157 10.73896 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.001802 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.382980 B =15535.924533 C =16073.613827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.083 3.917 4 N -0.492 5.492 5 C 0.200 3.800 6 O -0.192 6.192 7 C -0.113 4.113 8 C 0.609 3.391 9 O -0.508 6.508 10 N -0.710 5.710 11 C 0.153 3.847 12 H 0.094 0.906 13 C -0.153 4.153 14 C 0.077 3.923 15 H 0.082 0.918 16 C -0.185 4.185 17 N -0.657 5.657 18 C 0.053 3.947 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.402 0.598 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -1.369 -27.008 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.041 4.041 4 N -0.221 5.221 5 C -0.025 4.025 6 O -0.078 6.078 7 C -0.168 4.168 8 C 0.394 3.606 9 O -0.384 6.384 10 N -0.361 5.361 11 C 0.049 3.951 12 H 0.112 0.888 13 C -0.211 4.211 14 C -0.034 4.034 15 H 0.100 0.900 16 C -0.244 4.244 17 N -0.289 5.289 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.237 0.763 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.174 0.826 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.647 -2.749 -27.009 27.277 hybrid contribution 1.523 1.449 1.016 2.335 sum -1.124 -1.300 -25.992 26.049 Atomic orbital electron populations 1.21637 0.93666 1.02446 1.02001 1.20186 0.96766 0.87657 1.04498 1.22098 0.97448 0.98231 0.86303 1.70354 1.16942 1.03285 1.31489 1.28354 0.97092 0.97644 0.79393 1.84492 1.64778 1.34011 1.24509 1.23020 1.12184 0.85175 0.96430 1.16259 0.78253 0.84916 0.81199 1.90886 1.46387 1.19501 1.81670 1.45989 1.66908 1.16692 1.06511 1.20998 0.96380 1.00266 0.77450 0.88829 1.22052 0.94353 1.01276 1.03464 1.21744 0.93009 0.99318 0.89334 0.89961 1.22550 0.97621 1.02573 1.01668 1.59990 1.62216 1.06782 0.99934 1.21694 0.99144 0.94583 0.92588 1.19786 0.84803 0.86884 0.85980 1.90535 1.50884 1.20650 1.84533 1.41859 1.58183 1.14540 1.05432 1.19705 1.41722 1.00489 0.80940 0.87892 1.25263 0.97064 0.95168 1.00477 1.69606 1.45081 1.06105 1.33536 0.85854 0.78813 0.78083 0.81526 1.20436 1.20928 1.19377 0.91546 0.92300 0.92774 0.90050 0.88052 0.72794 0.76348 0.93071 0.92948 0.89174 0.92331 0.92079 0.92058 0.82630 0.93750 0.89558 0.77491 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.49 5.93 -27.89 -0.17 -0.66 16 3 C 0.08 0.85 6.41 -82.47 -0.53 0.32 16 4 N -0.49 -4.61 11.26 -10.88 -0.12 -4.73 16 5 C 0.20 1.24 13.21 52.24 0.69 1.93 16 6 O -0.19 -1.53 10.57 4.42 0.05 -1.48 16 7 C -0.11 -1.14 7.18 -36.84 -0.26 -1.40 16 8 C 0.61 6.79 7.75 -12.83 -0.10 6.69 16 9 O -0.51 -6.90 14.45 5.21 0.08 -6.83 16 10 N -0.71 -6.72 4.38 -55.10 -0.24 -6.96 16 11 C 0.15 1.69 2.34 -67.93 -0.16 1.53 16 12 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 13 C -0.15 -1.84 9.33 37.16 0.35 -1.49 16 14 C 0.08 0.84 2.22 -67.71 -0.15 0.69 16 15 H 0.08 0.83 7.80 -51.93 -0.41 0.42 16 16 C -0.19 -1.81 9.00 37.16 0.33 -1.47 16 17 N -0.66 -9.65 5.11 -107.99 -0.55 -10.20 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 19 C 0.44 10.05 7.82 -10.98 -0.09 9.97 16 20 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 21 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 26 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.03 6.46 -51.93 -0.34 0.70 16 35 H 0.26 0.18 8.06 -52.49 -0.42 -0.24 16 36 H 0.40 3.01 8.18 -40.82 -0.33 2.67 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.26 7.60 -51.93 -0.39 0.87 16 40 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 41 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 42 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.35 5.52 8.17 -39.29 -0.32 5.20 16 44 H 0.04 0.65 7.43 -51.93 -0.39 0.27 16 45 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 46 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -33.18 397.58 -6.03 -39.22 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -6.98 Total: 13.80 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 0.01 Total: 8.21 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.25 Total: -59.45 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.21 Total: -23.65 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.18 -6.03 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.472 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds