Wall clock time and date at job start Tue Mar 31 2020 20:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.46974 * 2 1 4 4 N 1.33698 * 126.27790 * 270.32187 * 3 2 1 5 5 C 1.30611 * 108.99935 * 180.12095 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.60037 * 5 4 3 7 7 C 1.35340 * 107.68343 * 0.24602 * 6 5 4 8 8 C 1.46728 * 126.64345 * 179.97438 * 7 6 5 9 9 O 1.21679 * 119.99974 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99759 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99831 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47242 * 35.00120 * 11 10 8 13 13 C 1.52998 * 109.47284 * 275.00136 * 11 10 8 14 14 C 1.53001 * 109.47224 * 155.00157 * 11 10 8 15 15 H 1.09003 * 109.46723 * 60.00161 * 14 11 10 16 16 C 1.52998 * 109.46973 * 300.00169 * 14 11 10 17 17 N 1.46900 * 109.47239 * 180.02562 * 14 11 10 18 18 C 1.46903 * 110.99792 * 205.00025 * 17 14 11 19 19 C 1.50699 * 109.46932 * 180.02562 * 18 17 14 20 20 O 1.21294 * 120.00238 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99999 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00056 * 180.02562 * 21 19 18 23 23 H 1.08011 * 119.99887 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00079 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00181 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99871 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47178 * 89.99882 * 26 24 22 28 28 H 1.48501 * 109.47339 * 209.99651 * 26 24 22 29 29 H 1.48504 * 109.47528 * 329.99997 * 26 24 22 30 30 H 1.09001 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47585 * 299.99791 * 1 2 3 32 32 H 1.09002 * 109.47375 * 60.00121 * 1 2 3 33 33 H 1.09004 * 109.46874 * 240.00313 * 2 1 3 34 34 H 1.08993 * 109.46901 * 120.00211 * 2 1 3 35 35 H 1.08002 * 125.42615 * 179.87304 * 5 4 3 36 36 H 0.96998 * 120.00452 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.47389 * 300.00284 * 13 11 10 38 38 H 1.09002 * 109.47230 * 59.99973 * 13 11 10 39 39 H 1.08998 * 109.47440 * 180.02562 * 13 11 10 40 40 H 1.09007 * 109.46946 * 60.00055 * 16 14 11 41 41 H 1.08998 * 109.46779 * 179.97438 * 16 14 11 42 42 H 1.08997 * 109.46968 * 299.99716 * 16 14 11 43 43 H 1.00895 * 111.00245 * 81.04630 * 17 14 11 44 44 H 1.08996 * 109.46987 * 299.99926 * 18 17 14 45 45 H 1.09004 * 109.46861 * 60.00128 * 18 17 14 46 46 H 0.96996 * 119.99876 * 0.02562 * 21 19 18 47 47 H 0.96996 * 120.00264 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2902 2.1686 -1.0778 5 6 2.7104 3.3429 -0.6899 6 8 2.7254 3.3840 0.6461 7 6 2.3011 2.1813 1.0992 8 6 2.1586 1.7745 2.5017 9 8 1.7643 0.6560 2.7737 10 7 2.4644 2.6398 3.4887 11 6 2.3216 2.2338 4.8891 12 1 2.5741 1.1782 4.9889 13 6 0.8768 2.4575 5.3401 14 6 3.2628 3.0680 5.7604 15 1 3.0102 4.1236 5.6606 16 6 4.7076 2.8443 5.3094 17 7 3.1200 2.6605 7.1646 18 6 3.5051 3.7506 8.0708 19 6 3.3465 3.2962 9.4989 20 8 2.9511 2.1748 9.7382 21 7 3.6431 4.1364 10.5103 22 6 3.4993 3.7229 11.8094 23 1 3.1480 2.7240 12.0225 24 6 3.8055 4.5888 12.8521 25 7 4.2334 5.8039 12.5929 26 14 3.6090 4.0256 14.6222 27 1 4.8773 3.4110 15.0899 28 1 3.2789 5.1925 15.4793 29 1 2.5144 3.0253 14.7049 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8932 -0.5138 0.8899 35 1 2.9958 4.1533 -1.3443 36 1 2.7783 3.5316 3.2720 37 1 0.6242 3.5131 5.2403 38 1 0.2062 1.8632 4.7194 39 1 0.7706 2.1559 6.3822 40 1 4.8138 3.1465 4.2674 41 1 5.3780 3.4389 5.9299 42 1 4.9601 1.7887 5.4092 43 1 3.6544 1.8261 7.3551 44 1 4.5448 4.0232 7.8900 45 1 2.8662 4.6153 7.8911 46 1 3.9582 5.0335 10.3189 47 1 4.4476 6.4083 13.3207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733984396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:24 Heat of formation + Delta-G solvation = -84.278428 kcal Electronic energy + Delta-G solvation = -28859.609615 eV Core-core repulsion = 24656.763905 eV Total energy + Delta-G solvation = -4202.845710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.48720 -40.97955 -40.15127 -38.49587 -36.81368 -36.03089 -35.39465 -33.99420 -33.26734 -32.24108 -30.81615 -30.22296 -27.93944 -25.93011 -25.84338 -24.72459 -24.12461 -22.49796 -21.78966 -21.50459 -21.04355 -19.91195 -19.34035 -17.95588 -17.75761 -17.57250 -17.35799 -16.69908 -16.38322 -16.00301 -15.93757 -15.89604 -15.51985 -15.19009 -15.16816 -14.92216 -14.60858 -14.40321 -14.28332 -13.96409 -13.73644 -13.52955 -13.39010 -13.20650 -12.99065 -12.72557 -12.59602 -12.53171 -12.40631 -12.30981 -12.16564 -12.12247 -12.06740 -11.93946 -11.70170 -11.49564 -11.21550 -10.43406 -10.31028 -9.99960 -9.95477 -9.29726 -8.45850 -5.94001 -0.24971 1.37631 1.38314 1.40113 1.42428 1.54781 1.95469 2.03440 2.07622 2.30694 2.99449 3.10880 3.21843 3.54983 3.57959 3.61759 3.76072 4.00824 4.19558 4.27285 4.30404 4.32383 4.38110 4.45477 4.47397 4.48503 4.55454 4.62916 4.75552 4.77634 4.83067 4.93489 4.98318 5.01514 5.08729 5.19866 5.20599 5.29375 5.33624 5.42258 5.46685 5.89759 6.10380 6.25734 6.36671 6.55925 6.61743 6.95849 7.14333 7.58387 8.14040 8.71413 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030614 B = 0.001802 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.382980 B =15535.924533 C =16073.613827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C 0.076 3.924 4 N -0.524 5.524 5 C 0.228 3.772 6 O -0.190 6.190 7 C -0.133 4.133 8 C 0.608 3.392 9 O -0.540 6.540 10 N -0.696 5.696 11 C 0.162 3.838 12 H 0.073 0.927 13 C -0.147 4.147 14 C 0.085 3.915 15 H 0.102 0.898 16 C -0.179 4.179 17 N -0.671 5.671 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.309 0.691 36 H 0.415 0.585 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.346 0.654 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 0.548 -28.654 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.048 4.048 4 N -0.253 5.253 5 C 0.004 3.996 6 O -0.076 6.076 7 C -0.188 4.188 8 C 0.394 3.606 9 O -0.420 6.420 10 N -0.348 5.348 11 C 0.057 3.943 12 H 0.092 0.908 13 C -0.205 4.205 14 C -0.026 4.026 15 H 0.120 0.880 16 C -0.238 4.238 17 N -0.303 5.303 18 C -0.063 4.063 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.323 0.677 36 H 0.252 0.748 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.165 0.835 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.886 -0.788 -28.686 28.759 hybrid contribution 1.286 0.870 1.381 2.078 sum -0.601 0.082 -27.305 27.312 Atomic orbital electron populations 1.21582 0.93250 1.03035 1.01259 1.20179 0.97113 0.87729 1.04220 1.22265 0.97091 0.98558 0.86860 1.70379 1.18833 1.04626 1.31425 1.29595 0.93391 0.97623 0.78997 1.84497 1.64810 1.32920 1.25379 1.22664 1.14180 0.86220 0.95724 1.16403 0.77690 0.84578 0.81901 1.90869 1.47873 1.20890 1.82339 1.45765 1.66475 1.17077 1.05458 1.20753 0.95803 0.99340 0.78393 0.90843 1.21954 0.94938 1.01788 1.01806 1.21740 0.93812 1.00075 0.86939 0.88022 1.22481 0.96389 1.02121 1.02816 1.59941 1.62501 1.06133 1.01695 1.21542 1.01194 0.95274 0.88307 1.20933 0.82491 0.85903 0.88184 1.90507 1.52182 1.22520 1.85772 1.41922 1.58948 1.15062 1.05172 1.19644 1.43624 1.00043 0.82893 0.90436 1.26002 0.96262 0.95165 1.03850 1.69659 1.44977 1.06594 1.34808 0.84956 0.78679 0.77862 0.77017 1.19685 1.19568 1.19925 0.90363 0.93956 0.92396 0.89088 0.89462 0.67663 0.74810 0.91783 0.93837 0.91406 0.90451 0.91861 0.92980 0.83483 0.91225 0.87405 0.76922 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.89 71.98 0.71 -1.59 16 2 C -0.05 -1.02 5.93 29.85 0.18 -0.85 16 3 C 0.08 1.50 6.41 41.83 0.27 1.77 16 4 N -0.52 -8.80 11.26 -303.13 -3.41 -12.21 16 5 C 0.23 2.08 13.21 130.42 1.72 3.80 16 6 O -0.19 -2.52 10.57 -7.09 -0.07 -2.60 16 7 C -0.13 -2.55 7.18 24.05 0.17 -2.37 16 8 C 0.61 13.42 7.75 86.46 0.67 14.09 16 9 O -0.54 -15.22 14.45 -4.28 -0.06 -15.28 16 10 N -0.70 -12.33 4.38 -446.47 -1.95 -14.28 16 11 C 0.16 3.48 2.34 44.99 0.11 3.59 16 12 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 13 C -0.15 -3.51 9.33 71.98 0.67 -2.83 16 14 C 0.08 1.70 2.22 44.92 0.10 1.80 16 15 H 0.10 1.70 7.80 -2.39 -0.02 1.68 16 16 C -0.18 -3.11 9.00 71.98 0.65 -2.46 16 17 N -0.67 -19.18 5.11 -495.57 -2.53 -21.71 16 18 C 0.07 2.16 5.97 85.56 0.51 2.67 16 19 C 0.44 20.11 7.82 87.66 0.69 20.79 16 20 O -0.62 -33.96 15.78 -3.07 -0.05 -34.01 16 21 N -0.57 -28.74 5.29 -306.97 -1.62 -30.37 16 22 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 23 H 0.08 4.68 7.16 -2.90 -0.02 4.66 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 26 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.87 6.46 -2.39 -0.02 1.86 16 35 H 0.31 -1.15 8.06 -2.91 -0.02 -1.17 16 36 H 0.41 5.20 8.18 -92.71 -0.76 4.44 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.94 7.60 -2.39 -0.02 1.92 16 40 H 0.08 1.06 7.45 -2.38 -0.02 1.04 16 41 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 42 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.35 10.85 8.17 -89.70 -0.73 10.12 16 44 H 0.07 1.87 7.43 -2.39 -0.02 1.85 16 45 H 0.11 2.96 8.06 -2.38 -0.02 2.94 16 46 H 0.40 18.74 7.90 -92.71 -0.73 18.00 16 47 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -74.37 397.58 -0.87 -75.24 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -1.20 Total: 38.81 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.72 Total: 20.28 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -9.24 Total: -127.24 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.19 Total: -51.88 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.37 -0.87 -75.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.036 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds