Wall clock time and date at job start Tue Mar 31 2020 21:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47389 * 2 1 4 4 C 1.52994 * 109.47423 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47259 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47126 * 304.99836 * 5 4 3 7 7 C 1.53000 * 109.47353 * 184.99673 * 5 4 3 8 8 N 1.46499 * 109.47613 * 184.99809 * 7 5 4 9 9 C 1.36933 * 120.00513 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99413 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00199 * 180.02562 * 9 8 7 12 12 N 1.31626 * 120.00011 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00115 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46955 * 90.00026 * 13 11 9 15 15 H 1.48500 * 109.47179 * 209.99926 * 13 11 9 16 16 H 1.48502 * 109.47093 * 330.00288 * 13 11 9 17 17 N 1.46499 * 109.47197 * 64.99949 * 5 4 3 18 18 C 1.34779 * 119.99952 * 274.99845 * 17 5 4 19 19 O 1.21620 * 119.99638 * 4.34029 * 18 17 5 20 20 C 1.47306 * 120.00308 * 184.34512 * 18 17 5 21 21 C 1.38321 * 120.73238 * 354.93894 * 20 18 17 22 22 N 1.34952 * 119.01867 * 180.02562 * 21 20 18 23 23 C 1.46496 * 119.70755 * 179.97438 * 22 21 20 24 24 C 1.34458 * 120.59041 * 0.25046 * 22 21 20 25 25 O 1.21904 * 119.20410 * 179.72758 * 24 22 21 26 26 N 1.33325 * 121.59380 * 359.48385 * 24 22 21 27 27 C 1.32217 * 120.93573 * 0.51718 * 26 24 22 28 28 O 1.35008 * 120.33848 * 179.72176 * 27 26 24 29 29 H 1.09006 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47005 * 299.99968 * 1 2 3 31 31 H 1.08995 * 109.47285 * 60.00198 * 1 2 3 32 32 H 1.09005 * 109.46712 * 240.00040 * 2 1 3 33 33 H 1.09000 * 109.47057 * 120.00479 * 2 1 3 34 34 H 1.09003 * 109.46689 * 59.99714 * 3 2 1 35 35 H 1.09004 * 109.46522 * 300.00173 * 3 2 1 36 36 H 1.09000 * 109.47356 * 59.99592 * 4 3 2 37 37 H 1.09009 * 109.46918 * 300.00142 * 4 3 2 38 38 H 1.09000 * 109.47392 * 305.00426 * 7 5 4 39 39 H 1.09008 * 109.47013 * 65.00042 * 7 5 4 40 40 H 0.97002 * 119.99474 * 0.02562 * 8 7 5 41 41 H 0.97000 * 119.99970 * 180.02562 * 12 11 9 42 42 H 0.97001 * 120.00617 * 95.00677 * 17 5 4 43 43 H 1.07995 * 120.49211 * 0.04703 * 21 20 18 44 44 H 1.09005 * 109.47177 * 89.99570 * 23 22 21 45 45 H 1.09000 * 109.46876 * 329.99929 * 23 22 21 46 46 H 1.08995 * 109.47438 * 209.99613 * 23 22 21 47 47 H 0.96705 * 113.99684 * 0.03001 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6451 3.4244 -0.8413 7 6 5.6048 2.8868 -0.1263 8 7 6.1031 4.2592 -0.0060 9 6 7.4469 4.5095 -0.0885 10 1 8.1393 3.6950 -0.2419 11 6 7.9190 5.8097 0.0261 12 7 9.2107 6.0502 -0.0528 13 14 6.7213 7.2183 0.2921 14 1 6.5190 7.4277 1.7483 15 1 7.2715 8.4571 -0.3144 16 1 5.4212 6.8898 -0.3460 17 7 3.6930 3.5391 1.2523 18 6 2.4757 4.1060 1.3683 19 8 1.6698 4.0063 0.4630 20 6 2.1215 4.8466 2.5915 21 6 2.9852 4.8821 3.6713 22 7 2.6255 5.5706 4.7748 23 6 3.5285 5.6178 5.9275 24 6 1.4434 6.2091 4.8280 25 8 1.1420 6.8194 5.8393 26 7 0.5951 6.1950 3.7995 27 6 0.8849 5.5397 2.6883 28 8 0.0145 5.5288 1.6564 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8892 38 1 6.0357 2.2731 0.6648 39 1 5.8895 2.4807 -1.0970 40 1 5.4811 4.9906 0.1322 41 1 9.5407 6.9588 0.0276 42 1 4.3128 3.5645 1.9981 43 1 3.9335 4.3668 3.6318 44 1 4.1963 6.4740 5.8311 45 1 4.1166 4.7009 5.9661 46 1 2.9446 5.7138 6.8428 47 1 -0.7966 6.0291 1.8207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734097996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:58 Heat of formation + Delta-G solvation = -57.808194 kcal Electronic energy + Delta-G solvation = -30559.520017 eV Core-core repulsion = 26357.822142 eV Total energy + Delta-G solvation = -4201.697875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19089 -39.99200 -38.85400 -37.13205 -36.60351 -35.08926 -34.92191 -33.77680 -32.33660 -31.15297 -30.35255 -27.99572 -27.58582 -25.36073 -24.40046 -23.93318 -22.08897 -21.52782 -20.79023 -20.51641 -20.05487 -18.53395 -18.36579 -17.53936 -16.99278 -16.40450 -16.34620 -15.71170 -15.34380 -15.01062 -14.87749 -14.73996 -14.47497 -14.22195 -13.95786 -13.71199 -13.63870 -13.48333 -13.12057 -13.01855 -12.86606 -12.78571 -12.29659 -12.14266 -11.88909 -11.48785 -11.43706 -11.24363 -11.06357 -10.97563 -10.94110 -10.43250 -10.40732 -10.33918 -10.32920 -10.22716 -9.78841 -9.72300 -9.06634 -9.00515 -8.82153 -7.38950 -5.89629 -3.26422 0.19508 0.98290 1.97225 2.84748 2.93777 3.10717 3.22601 3.30827 3.36191 3.53190 3.75451 3.98382 4.39961 4.46166 4.63628 4.69451 4.81503 4.85773 4.94730 5.00607 5.11288 5.20827 5.24744 5.32014 5.37982 5.41408 5.54590 5.63869 5.71879 5.82352 5.84809 5.87962 5.94477 6.03576 6.07032 6.17785 6.26382 6.39162 6.47049 6.58840 6.71586 6.86577 7.39352 7.53455 7.79675 7.85645 8.24263 8.29199 9.07447 9.79417 9.98367 11.28452 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006862 B = 0.005319 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4079.448604 B = 5263.029291 C = 8241.766579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.090 0.910 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.248 4.248 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.878 3.122 14 H -0.286 1.286 15 H -0.289 1.289 16 H -0.276 1.276 17 N -0.716 5.716 18 C 0.576 3.424 19 O -0.509 6.509 20 C -0.296 4.296 21 C 0.244 3.756 22 N -0.517 5.517 23 C 0.055 3.945 24 C 0.655 3.345 25 O -0.528 6.528 26 N -0.617 5.617 27 C 0.495 3.505 28 O -0.411 6.411 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.362 0.638 41 H 0.261 0.739 42 H 0.396 0.604 43 H 0.190 0.810 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.978 -9.185 7.534 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.108 0.892 7 C 0.021 3.979 8 N -0.402 5.402 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.578 5.578 13 Si 0.708 3.292 14 H -0.213 1.213 15 H -0.215 1.215 16 H -0.202 1.202 17 N -0.368 5.368 18 C 0.361 3.639 19 O -0.384 6.384 20 C -0.309 4.309 21 C 0.102 3.898 22 N -0.230 5.230 23 C -0.087 4.087 24 C 0.356 3.644 25 O -0.402 6.402 26 N -0.376 5.376 27 C 0.293 3.707 28 O -0.202 6.202 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.231 0.769 43 H 0.207 0.793 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -15.824 -8.714 7.459 19.544 hybrid contribution -0.046 1.135 0.568 1.270 sum -15.870 -7.578 8.027 19.332 Atomic orbital electron populations 1.21735 0.96262 1.00813 1.01868 1.21575 0.95640 0.97767 1.01317 1.21710 0.94510 0.95310 1.03479 1.21976 0.96286 0.95834 1.02431 1.21404 0.96041 0.92941 0.86247 0.89198 1.20967 0.88921 0.88252 0.99796 1.42714 1.05341 1.02579 1.89522 1.19039 0.81955 0.94256 1.42493 0.89061 1.24648 0.95414 0.96824 1.01815 1.69691 1.11404 1.20072 1.56637 0.86657 0.81164 0.83497 0.77840 1.21260 1.21541 1.20232 1.45910 1.15632 1.57885 1.17373 1.17172 0.82435 0.78718 0.85598 1.90857 1.48805 1.59097 1.39683 1.19817 0.97027 1.15165 0.98890 1.22968 0.97295 0.85873 0.83621 1.46260 1.19727 1.41837 1.15185 1.22391 0.93589 1.04673 0.88043 1.17444 0.78433 0.80649 0.87832 1.90991 1.74707 1.44445 1.30025 1.69714 1.33746 1.31771 1.02331 1.20187 0.85436 0.80876 0.84159 1.85279 1.31254 1.69141 1.34489 0.93372 0.93017 0.92776 0.92435 0.92683 0.91524 0.91452 0.90911 0.91826 0.94832 0.93861 0.80484 0.92932 0.76865 0.79339 0.89443 0.88700 0.87943 0.73232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.25 5.93 -26.73 -0.16 -1.40 16 3 C -0.11 -1.31 3.77 -26.73 -0.10 -1.41 16 4 C -0.13 -1.40 4.89 -26.74 -0.13 -1.53 16 5 C 0.14 1.85 2.41 -67.94 -0.16 1.68 16 6 H 0.09 1.40 7.64 -51.93 -0.40 1.00 16 7 C 0.15 2.40 5.82 -4.04 -0.02 2.37 16 8 N -0.76 -15.87 5.24 -59.91 -0.31 -16.19 16 9 C -0.25 -6.44 10.47 -15.06 -0.16 -6.60 16 10 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 11 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 12 N -0.93 -27.86 13.97 55.49 0.78 -27.08 16 13 Si 0.88 21.02 27.73 -169.99 -4.71 16.31 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 17 N -0.72 -8.66 4.42 -54.92 -0.24 -8.90 16 18 C 0.58 7.60 6.48 -12.57 -0.08 7.52 16 19 O -0.51 -8.01 12.11 -15.91 -0.19 -8.20 16 20 C -0.30 -3.47 5.90 -104.70 -0.62 -4.08 16 21 C 0.24 2.20 9.90 -16.15 -0.16 2.04 16 22 N -0.52 -5.32 2.96 -128.88 -0.38 -5.70 16 23 C 0.05 0.38 10.35 59.84 0.62 1.00 16 24 C 0.65 9.41 8.32 -88.49 -0.74 8.67 16 25 O -0.53 -9.10 16.66 5.01 0.08 -9.02 16 26 N -0.62 -8.68 10.38 -16.47 -0.17 -8.85 16 27 C 0.50 6.23 7.93 -15.91 -0.13 6.10 16 28 O -0.41 -4.65 11.78 -37.91 -0.45 -5.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.86 5.54 -51.93 -0.29 0.57 16 35 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.36 7.63 5.20 -40.82 -0.21 7.42 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.40 4.02 6.71 -40.82 -0.27 3.74 16 43 H 0.19 0.99 6.48 -52.49 -0.34 0.65 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.33 8.02 -51.93 -0.42 -0.09 16 46 H 0.10 0.77 7.35 -51.93 -0.38 0.39 16 47 H 0.41 2.77 8.98 45.56 0.41 3.18 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -36.87 385.08 -7.49 -44.36 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.12 Total: 9.12 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -1.56 Total: 13.44 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.33 Total: -66.72 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.56 Total: -22.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.87 -7.49 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734097996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.453 kcal (2) G-P(sol) polarization free energy of solvation -36.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds