Wall clock time and date at job start Tue Mar 31 2020 21:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47389 * 2 1 4 4 C 1.52994 * 109.47423 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47259 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47126 * 304.99836 * 5 4 3 7 7 C 1.53000 * 109.47353 * 184.99673 * 5 4 3 8 8 N 1.46499 * 109.47613 * 184.99809 * 7 5 4 9 9 C 1.36933 * 120.00513 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99413 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00199 * 180.02562 * 9 8 7 12 12 N 1.31626 * 120.00011 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00115 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46955 * 90.00026 * 13 11 9 15 15 H 1.48500 * 109.47179 * 209.99926 * 13 11 9 16 16 H 1.48502 * 109.47093 * 330.00288 * 13 11 9 17 17 N 1.46499 * 109.47197 * 64.99949 * 5 4 3 18 18 C 1.34779 * 119.99952 * 274.99845 * 17 5 4 19 19 O 1.21620 * 119.99638 * 4.34029 * 18 17 5 20 20 C 1.47306 * 120.00308 * 184.34512 * 18 17 5 21 21 C 1.38321 * 120.73238 * 354.93894 * 20 18 17 22 22 N 1.34952 * 119.01867 * 180.02562 * 21 20 18 23 23 C 1.46496 * 119.70755 * 179.97438 * 22 21 20 24 24 C 1.34458 * 120.59041 * 0.25046 * 22 21 20 25 25 O 1.21904 * 119.20410 * 179.72758 * 24 22 21 26 26 N 1.33325 * 121.59380 * 359.48385 * 24 22 21 27 27 C 1.32217 * 120.93573 * 0.51718 * 26 24 22 28 28 O 1.35008 * 120.33848 * 179.72176 * 27 26 24 29 29 H 1.09006 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47005 * 299.99968 * 1 2 3 31 31 H 1.08995 * 109.47285 * 60.00198 * 1 2 3 32 32 H 1.09005 * 109.46712 * 240.00040 * 2 1 3 33 33 H 1.09000 * 109.47057 * 120.00479 * 2 1 3 34 34 H 1.09003 * 109.46689 * 59.99714 * 3 2 1 35 35 H 1.09004 * 109.46522 * 300.00173 * 3 2 1 36 36 H 1.09000 * 109.47356 * 59.99592 * 4 3 2 37 37 H 1.09009 * 109.46918 * 300.00142 * 4 3 2 38 38 H 1.09000 * 109.47392 * 305.00426 * 7 5 4 39 39 H 1.09008 * 109.47013 * 65.00042 * 7 5 4 40 40 H 0.97002 * 119.99474 * 0.02562 * 8 7 5 41 41 H 0.97000 * 119.99970 * 180.02562 * 12 11 9 42 42 H 0.97001 * 120.00617 * 95.00677 * 17 5 4 43 43 H 1.07995 * 120.49211 * 0.04703 * 21 20 18 44 44 H 1.09005 * 109.47177 * 89.99570 * 23 22 21 45 45 H 1.09000 * 109.46876 * 329.99929 * 23 22 21 46 46 H 1.08995 * 109.47438 * 209.99613 * 23 22 21 47 47 H 0.96705 * 113.99684 * 0.03001 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6451 3.4244 -0.8413 7 6 5.6048 2.8868 -0.1263 8 7 6.1031 4.2592 -0.0060 9 6 7.4469 4.5095 -0.0885 10 1 8.1393 3.6950 -0.2419 11 6 7.9190 5.8097 0.0261 12 7 9.2107 6.0502 -0.0528 13 14 6.7213 7.2183 0.2921 14 1 6.5190 7.4277 1.7483 15 1 7.2715 8.4571 -0.3144 16 1 5.4212 6.8898 -0.3460 17 7 3.6930 3.5391 1.2523 18 6 2.4757 4.1060 1.3683 19 8 1.6698 4.0063 0.4630 20 6 2.1215 4.8466 2.5915 21 6 2.9852 4.8821 3.6713 22 7 2.6255 5.5706 4.7748 23 6 3.5285 5.6178 5.9275 24 6 1.4434 6.2091 4.8280 25 8 1.1420 6.8194 5.8393 26 7 0.5951 6.1950 3.7995 27 6 0.8849 5.5397 2.6883 28 8 0.0145 5.5288 1.6564 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9562 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8892 38 1 6.0357 2.2731 0.6648 39 1 5.8895 2.4807 -1.0970 40 1 5.4811 4.9906 0.1322 41 1 9.5407 6.9588 0.0276 42 1 4.3128 3.5645 1.9981 43 1 3.9335 4.3668 3.6318 44 1 4.1963 6.4740 5.8311 45 1 4.1166 4.7009 5.9661 46 1 2.9446 5.7138 6.8428 47 1 -0.7966 6.0291 1.8207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734097996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:57 Heat of formation + Delta-G solvation = -88.254216 kcal Electronic energy + Delta-G solvation = -30560.840256 eV Core-core repulsion = 26357.822142 eV Total energy + Delta-G solvation = -4203.018114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.10694 -41.02184 -39.77793 -38.15251 -37.77784 -36.27020 -35.81021 -35.13664 -33.58971 -32.73682 -31.30929 -28.91832 -28.63752 -26.23125 -25.76061 -24.92310 -23.48573 -22.61184 -21.71773 -21.57771 -20.97066 -19.88392 -19.37782 -18.87979 -17.90254 -17.40592 -17.34852 -16.71601 -16.59644 -16.19937 -15.85862 -15.82679 -15.57581 -15.47709 -14.90311 -14.80050 -14.65667 -14.50241 -14.46967 -14.19620 -13.86970 -13.62731 -13.53361 -13.23347 -12.91231 -12.86624 -12.66679 -12.50526 -12.29548 -12.14208 -11.90108 -11.83228 -11.79655 -11.38835 -11.32728 -11.32137 -11.24743 -10.98316 -10.80650 -10.02356 -9.79464 -9.26513 -7.99760 -5.32064 -0.60324 0.00349 1.17285 1.33951 1.41473 1.46430 1.89431 2.02484 2.15930 2.48079 2.57039 2.93573 3.26889 3.32931 3.48353 3.61426 3.96051 3.98540 4.06314 4.15121 4.16810 4.25301 4.36277 4.38035 4.40976 4.59375 4.68784 4.73179 4.81860 4.92628 5.00366 5.01990 5.04004 5.06801 5.16390 5.21241 5.29291 5.39427 5.47918 5.64468 5.71065 5.82196 6.10030 6.24023 6.43419 6.58598 6.83945 7.11557 7.27503 7.87508 8.04956 9.21729 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006862 B = 0.005319 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4079.448604 B = 5263.029291 C = 8241.766579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.118 4.118 5 C 0.150 3.850 6 H 0.067 0.933 7 C 0.148 3.852 8 N -0.756 5.756 9 C -0.223 4.223 10 H 0.065 0.935 11 C -0.055 4.055 12 N -0.982 5.982 13 Si 0.939 3.061 14 H -0.266 1.266 15 H -0.306 1.306 16 H -0.265 1.265 17 N -0.709 5.709 18 C 0.580 3.420 19 O -0.539 6.539 20 C -0.317 4.317 21 C 0.270 3.730 22 N -0.510 5.510 23 C 0.046 3.954 24 C 0.647 3.353 25 O -0.570 6.570 26 N -0.643 5.643 27 C 0.494 3.506 28 O -0.418 6.418 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.364 0.636 41 H 0.256 0.744 42 H 0.409 0.591 43 H 0.235 0.765 44 H 0.092 0.908 45 H 0.139 0.861 46 H 0.092 0.908 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.256 -10.758 8.459 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.157 4.157 5 C 0.045 3.955 6 H 0.085 0.915 7 C 0.021 3.979 8 N -0.402 5.402 9 C -0.355 4.355 10 H 0.083 0.917 11 C -0.247 4.247 12 N -0.633 5.633 13 Si 0.768 3.232 14 H -0.192 1.192 15 H -0.234 1.234 16 H -0.191 1.191 17 N -0.362 5.362 18 C 0.366 3.634 19 O -0.417 6.417 20 C -0.330 4.330 21 C 0.128 3.872 22 N -0.221 5.221 23 C -0.094 4.094 24 C 0.349 3.651 25 O -0.447 6.447 26 N -0.403 5.403 27 C 0.294 3.706 28 O -0.212 6.212 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.197 0.803 41 H 0.065 0.935 42 H 0.246 0.754 43 H 0.251 0.749 44 H 0.111 0.889 45 H 0.157 0.843 46 H 0.111 0.889 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -16.135 -10.341 8.390 20.920 hybrid contribution 0.049 1.504 0.223 1.522 sum -16.086 -8.836 8.613 20.274 Atomic orbital electron populations 1.21733 0.96257 1.01516 1.01178 1.21553 0.95662 0.96608 1.02162 1.21580 0.94788 0.96089 1.01784 1.21919 0.95768 0.94230 1.03786 1.21161 0.93776 0.94348 0.86204 0.91483 1.21134 0.90737 0.85796 1.00191 1.42708 1.03443 1.04770 1.89256 1.19033 0.83717 0.93234 1.39467 0.91716 1.25311 0.96726 0.99455 1.03167 1.69858 1.13641 1.20240 1.59539 0.85657 0.79212 0.79611 0.78710 1.19166 1.23377 1.19088 1.45777 1.15594 1.57588 1.17264 1.17269 0.82225 0.78325 0.85589 1.90852 1.49741 1.60190 1.40880 1.19732 0.97543 1.16217 0.99465 1.23546 0.97756 0.83959 0.81909 1.46252 1.18925 1.40539 1.16374 1.22742 0.93112 1.07260 0.86275 1.17555 0.79500 0.80728 0.87347 1.90955 1.75920 1.46470 1.31383 1.69602 1.34755 1.33003 1.02944 1.20317 0.85914 0.80551 0.83799 1.85263 1.32113 1.69438 1.34376 0.91964 0.93645 0.93573 0.91777 0.91548 0.92688 0.93759 0.90109 0.89875 0.92839 0.94172 0.80267 0.93503 0.75435 0.74923 0.88910 0.84296 0.88917 0.71424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.14 5.93 30.59 0.18 -1.96 16 3 C -0.10 -2.24 3.77 30.59 0.12 -2.13 16 4 C -0.12 -2.27 4.89 30.59 0.15 -2.12 16 5 C 0.15 3.64 2.41 44.99 0.11 3.75 16 6 H 0.07 1.99 7.64 -2.39 -0.02 1.97 16 7 C 0.15 4.36 5.82 86.38 0.50 4.86 16 8 N -0.76 -29.92 5.24 -343.45 -1.80 -31.72 16 9 C -0.22 -11.36 10.47 84.03 0.88 -10.48 16 10 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 11 C -0.05 -2.98 5.50 84.86 0.47 -2.52 16 12 N -0.98 -59.32 13.97 21.65 0.30 -59.02 16 13 Si 0.94 42.56 27.73 68.60 1.90 44.47 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 16 H -0.27 -11.38 6.52 99.48 0.65 -10.73 16 17 N -0.71 -14.93 4.42 -445.93 -1.97 -16.90 16 18 C 0.58 14.06 6.48 86.63 0.56 14.63 16 19 O -0.54 -16.46 12.11 16.15 0.20 -16.26 16 20 C -0.32 -6.72 5.90 -19.92 -0.12 -6.83 16 21 C 0.27 3.89 9.90 84.23 0.83 4.72 16 22 N -0.51 -9.16 2.96 -679.96 -2.01 -11.17 16 23 C 0.05 0.49 10.35 127.77 1.32 1.81 16 24 C 0.65 18.08 8.32 179.60 1.49 19.57 16 25 O -0.57 -19.75 16.66 -5.00 -0.08 -19.84 16 26 N -0.64 -17.86 10.38 -438.20 -4.55 -22.41 16 27 C 0.49 12.00 7.93 85.59 0.68 12.68 16 28 O -0.42 -9.33 11.78 -62.55 -0.74 -10.07 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.32 5.54 -2.39 -0.01 1.31 16 35 H 0.04 1.15 7.80 -2.39 -0.02 1.13 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 40 H 0.36 14.27 5.20 -92.71 -0.48 13.79 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 42 H 0.41 6.45 6.71 -92.71 -0.62 5.83 16 43 H 0.23 1.10 6.48 -2.91 -0.02 1.09 16 44 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.14 0.24 8.02 -2.39 -0.02 0.22 16 46 H 0.09 1.23 7.35 -2.39 -0.02 1.21 16 47 H 0.43 5.74 8.98 -74.05 -0.67 5.08 16 Total: -1.00 -82.08 385.08 -1.66 -83.75 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.80 Total: 25.12 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 7.89 Total: 34.04 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -10.03 Total: -141.22 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.62 Total: -46.16 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.90 Total: 44.47 kcal Total: -82.08 -1.66 -83.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734097996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.508 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds