Wall clock time and date at job start Tue Mar 31 2020 20:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47129 * 2 1 4 4 N 1.29950 * 126.28569 * 269.98056 * 3 2 1 5 5 O 1.21301 * 110.24499 * 179.72558 * 4 3 2 6 6 C 1.33639 * 109.81429 * 0.46533 * 5 4 3 7 7 C 1.50703 * 126.55278 * 179.80755 * 6 5 4 8 8 O 1.42909 * 109.46635 * 269.68501 * 7 6 5 9 9 C 1.42900 * 113.99729 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46995 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99857 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00001 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00205 * 179.97438 * 12 10 9 14 14 H 1.09005 * 112.84936 * 23.80536 * 13 12 10 15 15 C 1.53781 * 113.61766 * 155.00631 * 13 12 10 16 16 C 1.53777 * 87.08481 * 89.19891 * 15 13 12 17 17 H 1.08996 * 113.61291 * 270.80265 * 16 15 13 18 18 C 1.53003 * 113.61209 * 139.97866 * 16 15 13 19 19 N 1.46499 * 109.46708 * 175.00014 * 18 16 15 20 20 C 1.36935 * 119.99926 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00369 * 179.73019 * 20 19 18 23 23 N 1.31614 * 120.00468 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99699 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47209 * 90.00536 * 24 22 20 26 26 H 1.48506 * 109.47294 * 210.00384 * 24 22 20 27 27 H 1.48501 * 109.47275 * 330.00287 * 24 22 20 28 28 C 1.53783 * 113.69156 * 252.53979 * 13 12 10 29 29 N 1.31137 * 106.89755 * 359.53868 * 6 5 4 30 30 H 1.08999 * 109.47551 * 59.99717 * 1 2 3 31 31 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47104 * 299.99792 * 1 2 3 33 33 H 1.09002 * 109.47104 * 240.00207 * 2 1 3 34 34 H 1.08994 * 109.47489 * 119.99826 * 2 1 3 35 35 H 1.08993 * 109.47687 * 149.68829 * 7 6 5 36 36 H 1.08997 * 109.47347 * 29.68012 * 7 6 5 37 37 H 1.08999 * 109.47379 * 60.00146 * 9 8 7 38 38 H 1.09001 * 109.47018 * 300.00227 * 9 8 7 39 39 H 0.97002 * 119.99996 * 0.02562 * 12 10 9 40 40 H 1.09005 * 113.60976 * 334.64807 * 15 13 12 41 41 H 1.09003 * 113.69162 * 203.76642 * 15 13 12 42 42 H 1.08998 * 109.46692 * 55.00516 * 18 16 15 43 43 H 1.08994 * 109.47584 * 295.00380 * 18 16 15 44 44 H 0.97005 * 120.00261 * 0.02562 * 19 18 16 45 45 H 0.97000 * 120.00663 * 179.97438 * 23 22 20 46 46 H 1.09003 * 113.61413 * 156.32403 * 28 13 12 47 47 H 1.08997 * 113.61481 * 25.42403 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2890 2.1459 -1.0475 5 8 2.6724 3.2468 -0.7123 6 6 2.7070 3.3279 0.6211 7 6 3.1295 4.5225 1.4370 8 8 4.5332 4.4505 1.6951 9 6 5.0391 5.5424 2.4659 10 6 6.5208 5.3649 2.6760 11 8 7.0878 4.3989 2.2111 12 7 7.2160 6.2803 3.3797 13 6 8.6562 6.1076 3.5845 14 1 9.1199 5.4809 2.8226 15 6 9.4052 7.4268 3.8367 16 6 9.1153 7.2144 5.3318 17 1 8.1696 7.6466 5.6589 18 6 10.2864 7.5890 6.2424 19 7 9.8745 7.4664 7.6430 20 6 10.7624 7.7526 8.6453 21 1 11.7665 8.0684 8.4034 22 6 10.3705 7.6419 9.9724 23 7 11.2238 7.9175 10.9358 24 14 8.6315 7.1031 10.3908 25 1 8.5876 5.6238 10.5134 26 1 8.2185 7.7189 11.6775 27 1 7.7059 7.5383 9.3142 28 6 9.0328 5.7105 5.0217 29 7 2.2976 2.1713 1.0841 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5862 4.5277 2.3819 36 1 2.9079 5.4360 0.8854 37 1 4.5354 5.5692 3.4321 38 1 4.8570 6.4769 1.9352 39 1 6.7625 7.0531 3.7512 40 1 8.9066 8.2995 3.4148 41 1 10.4653 7.3832 3.5869 42 1 10.5887 8.6167 6.0413 43 1 11.1247 6.9195 6.0503 44 1 8.9727 7.1825 7.8603 45 1 10.9499 7.8405 11.8631 46 1 9.9910 5.1962 5.0957 47 1 8.2335 5.1975 5.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734219154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:18 Heat of formation + Delta-G solvation = 26.044015 kcal Electronic energy + Delta-G solvation = -27701.475834 eV Core-core repulsion = 23503.414064 eV Total energy + Delta-G solvation = -4198.061770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.06631 -40.46463 -39.03502 -37.88044 -36.82789 -34.75350 -34.35250 -33.33498 -32.18138 -31.22098 -29.52050 -27.69831 -26.68531 -25.64939 -25.59245 -23.67933 -23.21177 -21.69534 -21.42181 -21.21843 -19.32961 -18.71537 -18.21682 -17.65641 -17.43447 -17.14641 -16.87830 -16.03821 -15.83616 -15.29576 -15.00517 -14.83813 -14.60288 -14.37211 -14.27240 -13.83608 -13.60984 -13.47753 -13.20675 -12.80232 -12.65645 -12.58037 -12.50433 -12.34659 -12.28327 -11.88587 -11.83414 -11.80131 -11.45732 -11.44365 -10.91587 -10.68870 -10.50891 -10.49615 -10.30906 -10.21599 -10.05902 -9.91744 -9.59161 -9.18965 -8.88857 -7.22706 -5.77431 -3.12544 0.52541 1.64485 2.09348 2.31548 2.57220 3.05744 3.34780 3.38214 3.43626 3.48572 3.66368 4.19012 4.34900 4.39749 4.52586 4.55935 4.56900 4.57811 4.60062 4.61991 4.65838 4.71084 4.84831 4.96461 4.96754 5.24138 5.27574 5.37138 5.50073 5.52075 5.58118 5.61691 5.65755 5.77630 5.81662 5.91401 6.04414 6.06494 6.17585 6.21087 6.50121 6.66371 6.79536 7.22953 7.67510 7.95576 7.99376 8.41824 9.21343 9.93771 10.13818 11.41144 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.001645 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.897792 B =17017.034471 C =18040.860625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C 0.172 3.828 4 N -0.377 5.377 5 O 0.089 5.911 6 C 0.183 3.817 7 C 0.157 3.843 8 O -0.355 6.355 9 C 0.046 3.954 10 C 0.515 3.485 11 O -0.517 6.517 12 N -0.707 5.707 13 C 0.117 3.883 14 H 0.102 0.898 15 C -0.135 4.135 16 C -0.119 4.119 17 H 0.086 0.914 18 C 0.166 3.834 19 N -0.755 5.755 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.142 4.142 29 N -0.458 5.458 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.402 0.598 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.027 0.973 43 H 0.029 0.971 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.094 0.906 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 -7.090 -24.818 34.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.101 4.101 4 N -0.083 5.083 5 O 0.028 5.972 6 C -0.038 4.038 7 C 0.078 3.922 8 O -0.272 6.272 9 C -0.034 4.034 10 C 0.300 3.700 11 O -0.391 6.391 12 N -0.360 5.360 13 C 0.012 3.988 14 H 0.120 0.880 15 C -0.174 4.174 16 C -0.138 4.138 17 H 0.105 0.895 18 C 0.039 3.961 19 N -0.401 5.401 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.180 4.180 29 N -0.193 5.193 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.035 -8.481 -25.631 34.849 hybrid contribution -1.469 0.418 0.903 1.774 sum -23.504 -8.063 -24.729 35.057 Atomic orbital electron populations 1.21740 0.93116 1.03017 1.02651 1.19982 0.96891 0.85412 1.05032 1.25955 1.00215 1.00710 0.83240 1.74660 1.17225 0.92566 1.23860 1.85307 1.60325 1.27015 1.24505 1.28113 0.97032 0.96416 0.82224 1.20589 0.83946 0.90120 0.97517 1.88064 1.20204 1.45432 1.73550 1.22295 0.93112 0.90641 0.97359 1.20064 0.88267 0.83094 0.78574 1.90768 1.70642 1.29412 1.48251 1.45531 1.09150 1.26160 1.55188 1.21953 0.79543 0.98731 0.98563 0.88037 1.23299 1.01292 0.96357 0.96423 1.22830 1.00326 0.96104 0.94545 0.89531 1.20619 0.93649 0.98066 0.83738 1.42693 1.12752 1.83351 1.01287 1.19084 0.94877 1.38125 0.85335 0.89255 1.24676 0.97403 1.01652 0.95503 1.69699 1.34242 1.55329 0.99016 0.86528 0.85869 0.78581 0.77392 1.21092 1.21774 1.20479 1.23465 1.02595 0.96994 0.94960 1.71901 1.16596 1.01341 1.29492 0.92322 0.90855 0.91931 0.88881 0.88324 0.87856 0.88713 0.89170 0.89242 0.76323 0.91067 0.88390 0.95556 0.95309 0.80758 0.93081 0.88721 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.03 -0.22 6.56 -27.88 -0.18 -0.41 16 3 C 0.17 1.71 7.47 -156.37 -1.17 0.54 16 4 N -0.38 -4.12 12.16 30.90 0.38 -3.74 16 5 O 0.09 0.90 11.31 18.11 0.20 1.10 16 6 C 0.18 1.66 8.14 -13.05 -0.11 1.56 16 7 C 0.16 0.87 6.56 36.01 0.24 1.10 16 8 O -0.36 -3.28 9.86 -55.14 -0.54 -3.82 16 9 C 0.05 0.29 6.42 36.01 0.23 0.52 16 10 C 0.52 5.51 7.91 -10.99 -0.09 5.42 16 11 O -0.52 -8.22 16.10 -14.36 -0.23 -8.45 16 12 N -0.71 -6.39 5.27 -53.02 -0.28 -6.67 16 13 C 0.12 1.29 4.32 -67.12 -0.29 1.00 16 14 H 0.10 1.24 7.46 -51.93 -0.39 0.85 16 15 C -0.14 -1.39 7.39 -25.92 -0.19 -1.58 16 16 C -0.12 -1.60 3.63 -89.81 -0.33 -1.93 16 17 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 18 C 0.17 3.04 6.10 -4.04 -0.02 3.02 16 19 N -0.76 -17.62 5.41 -59.91 -0.32 -17.94 16 20 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 21 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 24 Si 0.89 21.96 27.73 -169.99 -4.71 17.25 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 28 C -0.14 -1.86 7.43 -25.92 -0.19 -2.05 16 29 N -0.46 -4.87 11.55 -9.87 -0.11 -4.98 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.40 2.47 8.70 -40.82 -0.36 2.12 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 44 H 0.36 8.16 5.53 -40.82 -0.23 7.94 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -38.56 399.64 -8.11 -46.67 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.29 Total: 3.41 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.99 Total: -0.25 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.43 Total: -61.93 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.57 Total: -11.17 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.56 -8.11 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734219154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.716 kcal (2) G-P(sol) polarization free energy of solvation -38.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds