Wall clock time and date at job start Tue Mar 31 2020 20:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47129 * 2 1 4 4 N 1.29950 * 126.28569 * 269.98056 * 3 2 1 5 5 O 1.21301 * 110.24499 * 179.72558 * 4 3 2 6 6 C 1.33639 * 109.81429 * 0.46533 * 5 4 3 7 7 C 1.50703 * 126.55278 * 179.80755 * 6 5 4 8 8 O 1.42909 * 109.46635 * 269.68501 * 7 6 5 9 9 C 1.42900 * 113.99729 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46995 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99857 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00001 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00205 * 179.97438 * 12 10 9 14 14 H 1.09005 * 112.84936 * 23.80536 * 13 12 10 15 15 C 1.53781 * 113.61766 * 155.00631 * 13 12 10 16 16 C 1.53777 * 87.08481 * 89.19891 * 15 13 12 17 17 H 1.08996 * 113.61291 * 270.80265 * 16 15 13 18 18 C 1.53003 * 113.61209 * 139.97866 * 16 15 13 19 19 N 1.46499 * 109.46708 * 175.00014 * 18 16 15 20 20 C 1.36935 * 119.99926 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00369 * 179.73019 * 20 19 18 23 23 N 1.31614 * 120.00468 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99699 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47209 * 90.00536 * 24 22 20 26 26 H 1.48506 * 109.47294 * 210.00384 * 24 22 20 27 27 H 1.48501 * 109.47275 * 330.00287 * 24 22 20 28 28 C 1.53783 * 113.69156 * 252.53979 * 13 12 10 29 29 N 1.31137 * 106.89755 * 359.53868 * 6 5 4 30 30 H 1.08999 * 109.47551 * 59.99717 * 1 2 3 31 31 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47104 * 299.99792 * 1 2 3 33 33 H 1.09002 * 109.47104 * 240.00207 * 2 1 3 34 34 H 1.08994 * 109.47489 * 119.99826 * 2 1 3 35 35 H 1.08993 * 109.47687 * 149.68829 * 7 6 5 36 36 H 1.08997 * 109.47347 * 29.68012 * 7 6 5 37 37 H 1.08999 * 109.47379 * 60.00146 * 9 8 7 38 38 H 1.09001 * 109.47018 * 300.00227 * 9 8 7 39 39 H 0.97002 * 119.99996 * 0.02562 * 12 10 9 40 40 H 1.09005 * 113.60976 * 334.64807 * 15 13 12 41 41 H 1.09003 * 113.69162 * 203.76642 * 15 13 12 42 42 H 1.08998 * 109.46692 * 55.00516 * 18 16 15 43 43 H 1.08994 * 109.47584 * 295.00380 * 18 16 15 44 44 H 0.97005 * 120.00261 * 0.02562 * 19 18 16 45 45 H 0.97000 * 120.00663 * 179.97438 * 23 22 20 46 46 H 1.09003 * 113.61413 * 156.32403 * 28 13 12 47 47 H 1.08997 * 113.61481 * 25.42403 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2890 2.1459 -1.0475 5 8 2.6724 3.2468 -0.7123 6 6 2.7070 3.3279 0.6211 7 6 3.1295 4.5225 1.4370 8 8 4.5332 4.4505 1.6951 9 6 5.0391 5.5424 2.4659 10 6 6.5208 5.3649 2.6760 11 8 7.0878 4.3989 2.2111 12 7 7.2160 6.2803 3.3797 13 6 8.6562 6.1076 3.5845 14 1 9.1199 5.4809 2.8226 15 6 9.4052 7.4268 3.8367 16 6 9.1153 7.2144 5.3318 17 1 8.1696 7.6466 5.6589 18 6 10.2864 7.5890 6.2424 19 7 9.8745 7.4664 7.6430 20 6 10.7624 7.7526 8.6453 21 1 11.7665 8.0684 8.4034 22 6 10.3705 7.6419 9.9724 23 7 11.2238 7.9175 10.9358 24 14 8.6315 7.1031 10.3908 25 1 8.5876 5.6238 10.5134 26 1 8.2185 7.7189 11.6775 27 1 7.7059 7.5383 9.3142 28 6 9.0328 5.7105 5.0217 29 7 2.2976 2.1713 1.0841 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5862 4.5277 2.3819 36 1 2.9079 5.4360 0.8854 37 1 4.5354 5.5692 3.4321 38 1 4.8570 6.4769 1.9352 39 1 6.7625 7.0531 3.7512 40 1 8.9066 8.2995 3.4148 41 1 10.4653 7.3832 3.5869 42 1 10.5887 8.6167 6.0413 43 1 11.1247 6.9195 6.0503 44 1 8.9727 7.1825 7.8603 45 1 10.9499 7.8405 11.8631 46 1 9.9910 5.1962 5.0957 47 1 8.2335 5.1975 5.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734219154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:17 Heat of formation + Delta-G solvation = -4.408811 kcal Electronic energy + Delta-G solvation = -27702.796367 eV Core-core repulsion = 23503.414064 eV Total energy + Delta-G solvation = -4199.382304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.76423 -41.31494 -39.82205 -38.63071 -37.48148 -36.46600 -34.94905 -34.47887 -33.19863 -32.73303 -30.17867 -28.83972 -27.59274 -26.61174 -26.16600 -24.82877 -24.28423 -22.97311 -22.27474 -21.99378 -20.47928 -19.48787 -19.38350 -18.86760 -18.23267 -17.72661 -17.37069 -16.86575 -16.63080 -16.50516 -15.98603 -15.85307 -15.71963 -15.45892 -15.10419 -15.00005 -14.62057 -14.47491 -14.09280 -13.90752 -13.84010 -13.49635 -13.38327 -13.19431 -13.12145 -12.94893 -12.72786 -12.70444 -12.50860 -12.37526 -12.15157 -12.04129 -11.86486 -11.69452 -11.38200 -11.19587 -11.16773 -10.90867 -10.90472 -10.85983 -10.04878 -9.26339 -8.01849 -5.34907 -0.13091 0.97513 1.37308 1.42750 1.49834 1.52864 1.56737 1.93466 2.48727 2.49638 2.89201 3.13659 3.29494 3.48848 3.60339 3.67182 3.81487 3.88651 3.95740 4.08011 4.13009 4.13755 4.18562 4.26107 4.27517 4.38248 4.40448 4.56415 4.68451 4.74861 4.83163 4.87408 4.89158 4.91836 4.92628 4.97429 5.01351 5.14575 5.20223 5.27494 5.36006 5.65797 5.77535 5.80444 6.22382 6.56793 6.99432 7.10026 7.25296 7.87170 8.06379 9.19885 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.001645 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.897792 B =17017.034471 C =18040.860625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.079 5.921 6 C 0.185 3.815 7 C 0.155 3.845 8 O -0.397 6.397 9 C 0.049 3.951 10 C 0.508 3.492 11 O -0.580 6.580 12 N -0.694 5.694 13 C 0.125 3.875 14 H 0.087 0.913 15 C -0.116 4.116 16 C -0.113 4.113 17 H 0.101 0.899 18 C 0.161 3.839 19 N -0.757 5.757 20 C -0.237 4.237 21 H 0.053 0.947 22 C -0.067 4.067 23 N -0.986 5.986 24 Si 0.959 3.041 25 H -0.282 1.282 26 H -0.296 1.296 27 H -0.245 1.245 28 C -0.148 4.148 29 N -0.486 5.486 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.420 0.580 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.020 0.980 44 H 0.366 0.634 45 H 0.257 0.743 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.760 -6.202 -25.872 37.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.108 4.108 4 N -0.110 5.110 5 O 0.021 5.979 6 C -0.036 4.036 7 C 0.078 3.922 8 O -0.316 6.316 9 C -0.029 4.029 10 C 0.296 3.704 11 O -0.459 6.459 12 N -0.347 5.347 13 C 0.019 3.981 14 H 0.105 0.895 15 C -0.155 4.155 16 C -0.131 4.131 17 H 0.119 0.881 18 C 0.035 3.965 19 N -0.403 5.403 20 C -0.368 4.368 21 H 0.071 0.929 22 C -0.258 4.258 23 N -0.637 5.637 24 Si 0.785 3.215 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.169 1.169 28 C -0.187 4.187 29 N -0.222 5.222 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.258 0.742 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.199 0.801 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.235 -7.536 -26.726 37.522 hybrid contribution -0.347 0.159 1.209 1.268 sum -25.582 -7.377 -25.517 36.878 Atomic orbital electron populations 1.21702 0.91921 1.04178 1.02027 1.20182 0.97855 0.83858 1.05707 1.26562 0.99521 1.01772 0.82977 1.74637 1.18558 0.93162 1.24685 1.85263 1.60564 1.26832 1.25203 1.28965 0.95576 0.97042 0.82018 1.21044 0.82518 0.89962 0.98686 1.87988 1.22087 1.47146 1.74355 1.22477 0.89581 0.91451 0.99395 1.20986 0.90219 0.81978 0.77266 1.90746 1.72262 1.32000 1.50866 1.45416 1.08253 1.26511 1.54557 1.21713 0.81006 0.98756 0.96582 0.89500 1.23212 1.01778 0.96914 0.93556 1.22773 0.98796 0.96253 0.95309 0.88061 1.20826 0.95705 0.97826 0.82150 1.42705 1.12224 1.83064 1.02280 1.19082 0.94307 1.36650 0.86807 0.92858 1.25565 1.02382 1.02571 0.95310 1.69895 1.36906 1.57497 0.99365 0.85357 0.80568 0.77890 0.77649 1.20853 1.22269 1.16872 1.23479 1.01889 0.96690 0.96608 1.71916 1.17892 1.02276 1.30080 0.92884 0.88779 0.92534 0.88039 0.87751 0.85449 0.84664 0.85991 0.84866 0.74159 0.88334 0.88170 0.95601 0.96182 0.80055 0.93388 0.90017 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 71.98 0.71 -0.58 16 2 C -0.04 -0.47 6.56 29.85 0.20 -0.27 16 3 C 0.16 3.26 7.47 138.47 1.03 4.29 16 4 N -0.40 -8.82 12.16 -60.32 -0.73 -9.55 16 5 O 0.08 1.57 11.31 74.87 0.85 2.42 16 6 C 0.19 3.15 8.14 88.38 0.72 3.87 16 7 C 0.16 1.23 6.56 71.24 0.47 1.70 16 8 O -0.40 -6.33 9.86 -129.94 -1.28 -7.62 16 9 C 0.05 0.43 6.42 71.24 0.46 0.88 16 10 C 0.51 9.69 7.91 87.66 0.69 10.38 16 11 O -0.58 -18.30 16.10 16.00 0.26 -18.04 16 12 N -0.69 -10.32 5.27 -440.04 -2.32 -12.64 16 13 C 0.13 2.50 4.32 45.52 0.20 2.70 16 14 H 0.09 2.06 7.46 -2.38 -0.02 2.05 16 15 C -0.12 -2.04 7.39 31.12 0.23 -1.81 16 16 C -0.11 -2.73 3.63 -10.27 -0.04 -2.76 16 17 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 18 C 0.16 5.70 6.10 86.38 0.53 6.23 16 19 N -0.76 -34.44 5.41 -343.46 -1.86 -36.29 16 20 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 21 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 23 N -0.99 -63.43 13.97 21.65 0.30 -63.13 16 24 Si 0.96 44.78 27.73 68.60 1.90 46.68 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.24 -9.94 6.52 99.48 0.65 -9.29 16 28 C -0.15 -3.67 7.43 31.12 0.23 -3.44 16 29 N -0.49 -10.08 11.55 -303.20 -3.50 -13.58 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.42 3.19 8.70 -92.71 -0.81 2.39 16 40 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.02 0.75 7.84 -2.39 -0.02 0.73 16 44 H 0.37 15.65 5.53 -92.70 -0.51 15.13 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.08 2.22 7.90 -2.39 -0.02 2.20 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -88.96 399.64 0.01 -88.95 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.38 Total: 17.80 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.77 Total: 5.00 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -8.11 Total: -135.20 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.18 Total: -23.24 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -88.96 0.01 -88.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734219154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.542 kcal (2) G-P(sol) polarization free energy of solvation -88.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds