Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50695 * 109.47628 * 2 1 4 4 N 1.29943 * 125.37632 * 90.27615 * 3 2 1 5 5 C 1.36067 * 108.47306 * 180.19485 * 4 3 2 6 6 C 1.47428 * 126.44413 * 179.86515 * 5 4 3 7 7 O 1.21606 * 119.99803 * 179.68511 * 6 5 4 8 8 N 1.34771 * 119.99764 * 359.68608 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 C 1.52998 * 109.47705 * 174.99884 * 11 10 9 14 14 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 15 15 C 1.46905 * 110.99865 * 155.00007 * 14 11 10 16 16 C 1.50701 * 109.46951 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00148 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99889 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00089 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99695 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99866 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46780 * 59.99707 * 23 21 19 25 25 H 1.48496 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46749 * 300.00266 * 23 21 19 27 27 C 1.36086 * 107.10729 * 359.59529 * 5 4 3 28 28 O 1.34050 * 125.38268 * 270.02846 * 3 2 1 29 29 H 1.08995 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47224 * 299.99596 * 1 2 3 31 31 H 1.09001 * 109.47338 * 59.99071 * 1 2 3 32 32 H 1.09004 * 109.46845 * 239.99725 * 2 1 3 33 33 H 1.09001 * 109.47338 * 120.00929 * 2 1 3 34 34 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 36 36 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 37 37 H 1.09002 * 109.47153 * 300.00008 * 10 9 8 38 38 H 1.08998 * 109.47533 * 59.99637 * 10 9 8 39 39 H 1.09000 * 109.47812 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.46974 * 300.00556 * 13 11 10 41 41 H 1.09000 * 109.46929 * 59.99736 * 13 11 10 42 42 H 1.00893 * 111.00068 * 31.04513 * 14 11 10 43 43 H 1.09003 * 109.46905 * 299.99465 * 15 14 11 44 44 H 1.08999 * 109.47700 * 60.00069 * 15 14 11 45 45 H 0.96999 * 119.99748 * 0.02562 * 18 16 15 46 46 H 0.97003 * 119.99449 * 180.02562 * 22 21 19 47 47 H 1.08001 * 126.52797 * 180.27641 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2880 2.1283 1.0595 5 6 2.7161 3.3577 0.6639 6 6 3.1104 4.4729 1.5440 7 8 3.4824 5.5255 1.0621 8 7 3.0585 4.3255 2.8826 9 6 3.4498 5.4339 3.7572 10 6 3.2989 5.0079 5.2189 11 6 3.7081 6.1651 6.1323 12 1 3.1290 7.0523 5.8762 13 6 3.4397 5.7842 7.5896 14 7 5.1390 6.4462 5.9552 15 6 5.4500 7.8374 6.3103 16 6 6.9234 8.0877 6.1170 17 8 7.6435 7.1953 5.7218 18 7 7.4409 9.3037 6.3822 19 6 8.7814 9.5312 6.2069 20 1 9.4227 8.7364 5.8558 21 6 9.3150 10.7847 6.4809 22 7 8.5347 11.7517 6.9086 23 14 11.1414 11.0950 6.2413 24 1 11.5022 10.8541 4.8211 25 1 11.4556 12.5014 6.5997 26 1 11.9179 10.1763 7.1121 27 6 2.7177 3.3624 -0.6969 28 8 2.2906 2.1527 -1.0929 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.7615 3.4860 3.2671 35 1 4.4881 5.7017 3.5618 36 1 2.8097 6.2942 3.5619 37 1 2.2604 4.7403 5.4140 38 1 3.9387 4.1474 5.4146 39 1 3.7317 6.6084 8.2403 40 1 2.3780 5.5755 7.7210 41 1 4.0188 4.8969 7.8457 42 1 5.4343 6.2389 5.0130 43 1 4.8796 8.5116 5.6713 44 1 5.1855 8.0142 7.3528 45 1 6.8650 10.0175 6.6979 46 1 8.9071 12.6268 7.0995 47 1 3.0078 4.1827 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753005240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -63.089246 kcal Electronic energy + Delta-G solvation = -27975.396041 eV Core-core repulsion = 23773.469162 eV Total energy + Delta-G solvation = -4201.926879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.84896 -39.76675 -38.43916 -37.15014 -35.48398 -34.81442 -34.40976 -33.84501 -31.55593 -31.04991 -30.03359 -28.99087 -26.40123 -25.14177 -24.75944 -23.89825 -22.79835 -21.56138 -20.89963 -20.21480 -19.22285 -18.46005 -17.84264 -17.26610 -16.82713 -16.49348 -16.04630 -15.76511 -15.37072 -15.16676 -15.05945 -14.88411 -14.44933 -14.18128 -13.90233 -13.77941 -13.59256 -13.53301 -13.25446 -13.06307 -12.46826 -12.37050 -12.13773 -11.83402 -11.81330 -11.71716 -11.63781 -11.51630 -11.28469 -11.27460 -11.20414 -11.01488 -10.77086 -10.40654 -10.37881 -10.16757 -9.49308 -9.45456 -9.22226 -8.39438 -8.02611 -7.91034 -6.37136 -3.77713 0.73462 1.59832 2.13430 2.81618 3.03735 3.23819 3.28882 3.33705 3.40406 3.96202 4.13226 4.30796 4.34538 4.36213 4.53423 4.57094 4.64228 4.77369 4.89495 4.97297 5.13998 5.15447 5.16466 5.21067 5.29597 5.36473 5.41558 5.43236 5.51326 5.57159 5.68440 5.73981 5.83982 5.87404 5.92651 6.04308 6.09862 6.18185 6.29521 6.39730 6.98134 7.28077 7.31704 7.59488 7.70873 7.92211 8.11026 8.66402 9.22548 9.59341 10.11160 10.80590 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.001791 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.787544 B =15631.664724 C =16763.614433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 C 0.199 3.801 4 N -0.460 5.460 5 C -0.071 4.071 6 C 0.600 3.400 7 O -0.532 6.532 8 N -0.709 5.709 9 C 0.112 3.888 10 C -0.132 4.132 11 C 0.086 3.914 12 H 0.045 0.955 13 C -0.139 4.139 14 N -0.666 5.666 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.014 3.986 28 O -0.196 6.196 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.409 0.591 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.349 0.651 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.719 -20.829 -11.231 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.066 4.066 3 C -0.011 4.011 4 N -0.190 5.190 5 C -0.191 4.191 6 C 0.384 3.616 7 O -0.408 6.408 8 N -0.360 5.360 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.024 4.024 12 H 0.063 0.937 13 C -0.197 4.197 14 N -0.301 5.301 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.060 4.060 28 O -0.082 6.082 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.171 0.829 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -19.792 -20.918 -10.553 30.670 hybrid contribution 0.205 1.213 -1.112 1.658 sum -19.587 -19.706 -11.665 30.134 Atomic orbital electron populations 1.21797 0.92847 1.03223 1.03083 1.20138 0.97010 0.83828 1.05588 1.26376 0.99406 0.96996 0.78297 1.70746 1.15787 1.02511 1.29985 1.21794 1.09958 0.94254 0.93117 1.16737 0.77702 0.85150 0.81966 1.90872 1.47404 1.27206 1.75353 1.45734 1.67081 1.17887 1.05298 1.21561 1.01484 0.89121 0.88976 1.21980 1.02601 1.00000 0.92468 1.21451 0.89158 0.96145 0.95661 0.93697 1.21782 1.00230 1.02463 0.95207 1.60204 1.14482 1.22413 1.33015 1.21726 0.95869 0.89087 1.01597 1.19827 0.88919 0.83828 0.84779 1.90522 1.61176 1.43987 1.51040 1.41852 1.09488 1.10229 1.58499 1.19659 0.84013 0.97341 1.41877 0.87996 1.25254 1.00313 0.95245 0.97128 1.69608 1.36053 1.03238 1.45473 0.85919 0.82204 0.77136 0.78954 1.19944 1.20996 1.19908 1.25338 0.98370 0.86519 0.95740 1.84400 1.63305 1.22539 1.37910 0.90666 0.91627 0.92089 0.88596 0.87284 0.75548 0.90599 0.91147 0.90526 0.89919 0.92384 0.92872 0.91833 0.82950 0.93829 0.89576 0.77470 0.91873 0.75176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.89 37.15 0.37 -0.13 16 2 C -0.03 -0.11 6.56 -27.89 -0.18 -0.29 16 3 C 0.20 1.58 7.56 -13.08 -0.10 1.49 16 4 N -0.46 -4.64 11.06 -7.65 -0.08 -4.72 16 5 C -0.07 -0.79 6.99 -83.02 -0.58 -1.38 16 6 C 0.60 7.86 7.81 -12.52 -0.10 7.76 16 7 O -0.53 -8.65 16.89 5.27 0.09 -8.56 16 8 N -0.71 -7.93 5.55 -61.38 -0.34 -8.27 16 9 C 0.11 1.30 5.50 -4.04 -0.02 1.28 16 10 C -0.13 -1.32 4.92 -26.74 -0.13 -1.45 16 11 C 0.09 1.05 2.65 -67.72 -0.18 0.87 16 12 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 13 C -0.14 -1.55 9.41 37.16 0.35 -1.20 16 14 N -0.67 -10.95 5.93 -107.99 -0.64 -11.59 16 15 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 16 C 0.44 10.76 7.82 -10.98 -0.09 10.67 16 17 O -0.58 -16.33 15.78 5.55 0.09 -16.25 16 18 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 19 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.01 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.01 0.13 11.95 29.96 0.36 0.49 16 28 O -0.20 -1.65 10.73 6.51 0.07 -1.58 16 29 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.41 3.84 8.20 -40.82 -0.33 3.50 16 35 H 0.08 1.06 6.43 -51.93 -0.33 0.72 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.35 6.06 6.17 -39.30 -0.24 5.82 16 43 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 44 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 45 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 46 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.23 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -35.49 401.75 -6.69 -42.17 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.99 Total: 14.48 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.57 Total: 10.78 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.40 Total: -63.62 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.25 Total: -26.38 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.49 -6.69 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753005240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds