Wall clock time and date at job start Tue Mar 31 2020 20:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50695 * 109.47628 * 2 1 4 4 N 1.29943 * 125.37632 * 90.27615 * 3 2 1 5 5 C 1.36067 * 108.47306 * 180.19485 * 4 3 2 6 6 C 1.47428 * 126.44413 * 179.86515 * 5 4 3 7 7 O 1.21606 * 119.99803 * 179.68511 * 6 5 4 8 8 N 1.34771 * 119.99764 * 359.68608 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46906 * 55.00224 * 11 10 9 13 13 C 1.52998 * 109.47705 * 174.99884 * 11 10 9 14 14 N 1.46898 * 109.47092 * 295.00148 * 11 10 9 15 15 C 1.46905 * 110.99865 * 155.00007 * 14 11 10 16 16 C 1.50701 * 109.46951 * 179.97438 * 15 14 11 17 17 O 1.21294 * 120.00148 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99889 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00089 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99695 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99866 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46780 * 59.99707 * 23 21 19 25 25 H 1.48496 * 109.47123 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46749 * 300.00266 * 23 21 19 27 27 C 1.36086 * 107.10729 * 359.59529 * 5 4 3 28 28 O 1.34050 * 125.38268 * 270.02846 * 3 2 1 29 29 H 1.08995 * 109.47565 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47224 * 299.99596 * 1 2 3 31 31 H 1.09001 * 109.47338 * 59.99071 * 1 2 3 32 32 H 1.09004 * 109.46845 * 239.99725 * 2 1 3 33 33 H 1.09001 * 109.47338 * 120.00929 * 2 1 3 34 34 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 36 36 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 37 37 H 1.09002 * 109.47153 * 300.00008 * 10 9 8 38 38 H 1.08998 * 109.47533 * 59.99637 * 10 9 8 39 39 H 1.09000 * 109.47812 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.46974 * 300.00556 * 13 11 10 41 41 H 1.09000 * 109.46929 * 59.99736 * 13 11 10 42 42 H 1.00893 * 111.00068 * 31.04513 * 14 11 10 43 43 H 1.09003 * 109.46905 * 299.99465 * 15 14 11 44 44 H 1.08999 * 109.47700 * 60.00069 * 15 14 11 45 45 H 0.96999 * 119.99748 * 0.02562 * 18 16 15 46 46 H 0.97003 * 119.99449 * 180.02562 * 22 21 19 47 47 H 1.08001 * 126.52797 * 180.27641 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2880 2.1283 1.0595 5 6 2.7161 3.3577 0.6639 6 6 3.1104 4.4729 1.5440 7 8 3.4824 5.5255 1.0621 8 7 3.0585 4.3255 2.8826 9 6 3.4498 5.4339 3.7572 10 6 3.2989 5.0079 5.2189 11 6 3.7081 6.1651 6.1323 12 1 3.1290 7.0523 5.8762 13 6 3.4397 5.7842 7.5896 14 7 5.1390 6.4462 5.9552 15 6 5.4500 7.8374 6.3103 16 6 6.9234 8.0877 6.1170 17 8 7.6435 7.1953 5.7218 18 7 7.4409 9.3037 6.3822 19 6 8.7814 9.5312 6.2069 20 1 9.4227 8.7364 5.8558 21 6 9.3150 10.7847 6.4809 22 7 8.5347 11.7517 6.9086 23 14 11.1414 11.0950 6.2413 24 1 11.5022 10.8541 4.8211 25 1 11.4556 12.5014 6.5997 26 1 11.9179 10.1763 7.1121 27 6 2.7177 3.3624 -0.6969 28 8 2.2906 2.1527 -1.0929 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.7615 3.4860 3.2671 35 1 4.4881 5.7017 3.5618 36 1 2.8097 6.2942 3.5619 37 1 2.2604 4.7403 5.4140 38 1 3.9387 4.1474 5.4146 39 1 3.7317 6.6084 8.2403 40 1 2.3780 5.5755 7.7210 41 1 4.0188 4.8969 7.8457 42 1 5.4343 6.2389 5.0130 43 1 4.8796 8.5116 5.6713 44 1 5.1855 8.0142 7.3528 45 1 6.8650 10.0175 6.6979 46 1 8.9071 12.6268 7.0995 47 1 3.0078 4.1827 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753005240.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:22 Heat of formation + Delta-G solvation = -93.314727 kcal Electronic energy + Delta-G solvation = -27976.706716 eV Core-core repulsion = 23773.469162 eV Total energy + Delta-G solvation = -4203.237554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.53227 -40.78713 -40.21091 -38.43178 -36.22333 -36.04296 -35.70504 -34.86778 -33.33500 -32.59646 -30.73485 -29.86408 -28.08466 -26.15585 -25.54858 -25.19409 -23.68789 -22.24014 -21.78706 -21.22038 -21.04226 -19.93339 -19.27378 -17.97309 -17.88496 -17.51543 -17.33000 -16.93864 -16.72955 -16.42506 -16.10133 -15.81419 -15.62137 -15.51274 -15.26849 -14.93937 -14.62610 -14.45615 -14.30390 -14.06710 -13.58965 -13.51247 -13.35722 -13.18237 -12.87658 -12.64163 -12.61855 -12.45999 -12.41979 -12.28702 -12.23386 -12.12006 -12.04956 -11.98084 -11.81172 -11.51568 -11.39331 -10.39395 -10.33947 -10.04284 -10.02934 -9.33217 -8.47513 -5.96509 -0.01538 0.87213 1.38840 1.40299 1.50736 1.51669 1.94983 2.03861 2.11567 2.28450 2.76945 2.92168 3.19384 3.49671 3.60951 3.71004 3.75684 3.94954 4.07262 4.20108 4.25492 4.29641 4.33620 4.42803 4.47395 4.49860 4.53560 4.59859 4.60458 4.66818 4.93627 4.98036 4.99541 5.01422 5.03925 5.04653 5.17088 5.24544 5.35041 5.39432 5.47020 5.90557 6.12528 6.19439 6.39322 6.50208 6.59061 6.97349 7.11203 7.54632 8.10289 8.69639 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016508 B = 0.001791 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.787544 B =15631.664724 C =16763.614433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C 0.204 3.796 4 N -0.480 5.480 5 C -0.100 4.100 6 C 0.595 3.405 7 O -0.573 6.573 8 N -0.698 5.698 9 C 0.115 3.885 10 C -0.118 4.118 11 C 0.084 3.916 12 H 0.055 0.945 13 C -0.136 4.136 14 N -0.681 5.681 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.268 1.268 26 H -0.271 1.271 27 C 0.025 3.975 28 O -0.195 6.195 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.419 0.581 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.340 0.660 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.181 -21.962 -11.256 33.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.065 4.065 3 C -0.006 4.006 4 N -0.210 5.210 5 C -0.219 4.219 6 C 0.382 3.618 7 O -0.453 6.453 8 N -0.349 5.349 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.025 4.025 12 H 0.073 0.927 13 C -0.194 4.194 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.197 1.197 27 C -0.050 4.050 28 O -0.081 6.081 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.256 0.744 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -21.302 -22.065 -10.530 32.427 hybrid contribution 0.593 1.479 -1.128 1.952 sum -20.710 -20.586 -11.658 31.441 Atomic orbital electron populations 1.21785 0.92181 1.04368 1.02261 1.20435 0.97394 0.81516 1.07183 1.27272 0.97741 0.97940 0.77631 1.70714 1.16947 1.02330 1.30973 1.21649 1.12099 0.94495 0.93673 1.17055 0.77030 0.85178 0.82556 1.90838 1.49494 1.28901 1.76085 1.45665 1.66247 1.18150 1.04855 1.21476 0.99749 0.89392 0.90214 1.21889 1.04320 0.98908 0.90479 1.21614 0.86582 0.97346 0.96976 0.92665 1.21776 1.02027 1.01676 0.93883 1.60252 1.17643 1.21078 1.32553 1.21587 0.91210 0.90821 1.03174 1.20925 0.91375 0.82595 0.82771 1.90486 1.63083 1.45085 1.52457 1.41923 1.08929 1.11064 1.59035 1.19641 0.85264 0.97637 1.44128 0.90424 1.26052 1.04590 0.94473 0.96106 1.69668 1.37677 1.03555 1.45074 0.84983 0.76879 0.77658 0.78757 1.19856 1.19265 1.19655 1.25736 0.96844 0.87018 0.95379 1.84438 1.63200 1.22324 1.38088 0.88532 0.92890 0.92457 0.86391 0.86246 0.74390 0.93382 0.91360 0.87417 0.90119 0.93301 0.89903 0.92635 0.83924 0.91897 0.87653 0.76959 0.91251 0.73262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 71.98 0.71 0.04 16 2 C -0.03 -0.16 6.56 29.84 0.20 0.04 16 3 C 0.20 2.99 7.56 88.39 0.67 3.66 16 4 N -0.48 -9.37 11.06 -293.03 -3.24 -12.61 16 5 C -0.10 -2.24 6.99 40.41 0.28 -1.96 16 6 C 0.60 16.00 7.81 86.66 0.68 16.68 16 7 O -0.57 -19.40 16.89 -4.05 -0.07 -19.47 16 8 N -0.70 -15.62 5.55 -466.37 -2.59 -18.21 16 9 C 0.12 2.68 5.50 86.38 0.48 3.16 16 10 C -0.12 -2.16 4.92 30.59 0.15 -2.01 16 11 C 0.08 1.90 2.65 44.91 0.12 2.02 16 12 H 0.06 1.17 7.80 -2.39 -0.02 1.15 16 13 C -0.14 -2.71 9.41 71.98 0.68 -2.03 16 14 N -0.68 -22.18 5.93 -495.58 -2.94 -25.13 16 15 C 0.06 2.32 5.97 85.56 0.51 2.83 16 16 C 0.44 21.74 7.82 87.66 0.69 22.42 16 17 O -0.62 -36.24 15.78 -3.07 -0.05 -36.28 16 18 N -0.57 -30.53 5.29 -306.98 -1.62 -32.16 16 19 C -0.34 -19.82 9.68 84.04 0.81 -19.00 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 23 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.02 0.43 11.95 67.32 0.80 1.24 16 28 O -0.19 -3.05 10.73 0.38 0.00 -3.05 16 29 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.12 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.42 7.59 8.20 -92.71 -0.76 6.83 16 35 H 0.05 1.40 6.43 -2.39 -0.02 1.39 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.34 12.11 6.17 -89.70 -0.55 11.56 16 43 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 44 H 0.11 3.41 7.44 -2.39 -0.02 3.39 16 45 H 0.40 20.02 7.90 -92.71 -0.73 19.28 16 46 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.25 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -78.96 401.75 -1.98 -80.94 By element: Atomic # 1 Polarization: 44.37 SS G_CDS: -1.02 Total: 43.35 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 7.24 Total: 26.88 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -10.11 Total: -138.51 kcal Atomic # 8 Polarization: -58.69 SS G_CDS: -0.11 Total: -58.80 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -78.96 -1.98 -80.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753005240.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.371 kcal (2) G-P(sol) polarization free energy of solvation -78.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds