Wall clock time and date at job start Tue Mar 31 2020 21:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47386 * 2 1 4 4 C 1.52997 * 109.47475 * 120.00422 * 2 1 3 5 5 C 1.53000 * 109.47491 * 175.21810 * 4 2 1 6 6 H 1.08997 * 109.46920 * 56.66514 * 5 4 2 7 7 C 1.53000 * 109.47066 * 296.66309 * 5 4 2 8 8 N 1.46900 * 109.47072 * 184.99748 * 7 5 4 9 9 C 1.46901 * 110.99622 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46782 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99987 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99862 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00174 * 180.02562 * 12 10 9 14 14 H 1.07996 * 119.99457 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00115 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00097 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47510 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47306 * 120.00376 * 17 15 13 20 20 H 1.48504 * 109.46991 * 239.99882 * 17 15 13 21 21 N 1.46502 * 109.47243 * 176.66095 * 5 4 2 22 22 C 1.34769 * 120.00239 * 278.96054 * 21 5 4 23 23 O 1.21498 * 120.00185 * 354.33662 * 22 21 5 24 24 C 1.48333 * 120.00168 * 174.61756 * 22 21 5 25 25 C 1.42277 * 126.93799 * 180.02562 * 24 22 21 26 26 C 1.35313 * 103.91869 * 179.97438 * 25 24 22 27 27 O 1.34013 * 106.67166 * 359.97438 * 26 25 24 28 28 N 1.20910 * 111.84537 * 359.70852 * 27 26 25 29 29 H 1.08997 * 109.47152 * 299.99211 * 1 2 3 30 30 H 1.08999 * 109.47228 * 59.99891 * 1 2 3 31 31 H 1.09002 * 109.46991 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46984 * 240.00236 * 2 1 3 33 33 H 1.08997 * 109.46821 * 65.21196 * 3 2 1 34 34 H 1.08992 * 109.47274 * 185.21449 * 3 2 1 35 35 H 1.09004 * 109.46983 * 305.21554 * 3 2 1 36 36 H 1.08999 * 109.47555 * 55.21319 * 4 2 1 37 37 H 1.09004 * 109.46843 * 295.21610 * 4 2 1 38 38 H 1.09008 * 109.46930 * 304.99914 * 7 5 4 39 39 H 1.08999 * 109.46872 * 64.99862 * 7 5 4 40 40 H 1.00901 * 111.00038 * 56.04715 * 8 7 5 41 41 H 1.08993 * 109.47420 * 299.99910 * 9 8 7 42 42 H 1.08998 * 109.47145 * 60.00321 * 9 8 7 43 43 H 0.97008 * 120.00362 * 359.97438 * 12 10 9 44 44 H 0.96996 * 119.99988 * 180.02562 * 16 15 13 45 45 H 0.97001 * 119.99289 * 98.95487 * 21 5 4 46 46 H 1.07992 * 128.03911 * 359.97438 * 25 24 22 47 47 H 1.07997 * 126.66590 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5653 -0.8263 1.1905 6 1 3.9943 0.1703 1.0870 7 6 3.9717 -1.6837 -0.0098 8 7 5.4269 -1.8839 0.0018 9 6 5.8543 -2.7052 -1.1387 10 6 7.3496 -2.8881 -1.0937 11 8 7.9955 -2.3842 -0.1992 12 7 7.9690 -3.6115 -2.0473 13 6 9.3292 -3.7783 -2.0060 14 1 9.9043 -3.3296 -1.2096 15 6 9.9678 -4.5246 -2.9889 16 7 9.2680 -5.0700 -3.9583 17 14 11.8211 -4.7512 -2.9330 18 1 12.3712 -4.0416 -1.7502 19 1 12.1402 -6.1981 -2.8342 20 1 12.4254 -4.1945 -4.1701 21 7 4.0600 -1.4453 2.4227 22 6 4.2074 -0.7029 3.5377 23 8 4.0292 0.4982 3.4958 24 6 4.5933 -1.3512 4.8148 25 6 4.7881 -0.7145 6.0722 26 6 5.1244 -1.7290 6.9021 27 8 5.1174 -2.8477 6.1642 28 7 4.8166 -2.6263 5.0143 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.7549 1.9286 0.9330 34 1 3.1259 1.4439 -0.0934 35 1 1.6024 1.9826 -0.8396 36 1 1.6084 -1.7213 1.2931 37 1 1.7484 -0.1604 2.1371 38 1 3.4714 -2.6504 0.0482 39 1 3.6816 -1.1792 -0.9315 40 1 5.7289 -2.2916 0.8739 41 1 5.3672 -3.6789 -1.0881 42 1 5.5773 -2.2082 -2.0684 43 1 7.4524 -4.0148 -2.7625 44 1 9.7137 -5.5913 -4.6442 45 1 4.2813 -2.3897 2.4359 46 1 4.6902 0.3345 6.3092 47 1 5.3538 -1.6521 7.9546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753734312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:56 Heat of formation + Delta-G solvation = -19.952641 kcal Electronic energy + Delta-G solvation = -29131.688700 eV Core-core repulsion = 24931.632365 eV Total energy + Delta-G solvation = -4200.056335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.34413 -40.12599 -38.35612 -37.61837 -35.45907 -34.32121 -34.09946 -33.64209 -32.10780 -31.22830 -30.13141 -27.38203 -27.30502 -25.40493 -24.87506 -23.32521 -23.24820 -21.92530 -20.74624 -19.79298 -19.31641 -18.75923 -17.99778 -17.88499 -17.19006 -16.44831 -16.16383 -15.60356 -15.37816 -14.99138 -14.74480 -14.53385 -14.33570 -14.18428 -13.88762 -13.74496 -13.64935 -13.48140 -13.25106 -12.72483 -12.61169 -12.32795 -11.98913 -11.95403 -11.86018 -11.64276 -11.49856 -11.31004 -11.19837 -11.05460 -10.84907 -10.72448 -10.64008 -10.34287 -10.33323 -10.22628 -10.06879 -9.52308 -9.23206 -8.48724 -8.11072 -7.96472 -6.42118 -3.82801 0.89865 1.43280 2.67589 2.90631 2.99650 3.16322 3.26938 3.34473 3.70650 3.89906 4.02484 4.25346 4.33400 4.60424 4.73500 4.75027 4.77234 4.89547 4.98617 5.02916 5.14348 5.17166 5.23809 5.31686 5.43845 5.44460 5.52911 5.55902 5.61262 5.69189 5.73345 5.75559 5.81718 5.90715 5.94353 6.00826 6.17567 6.23833 6.25319 6.30886 7.11817 7.18238 7.55280 7.55699 7.72048 7.92862 8.06182 8.60860 9.17805 9.53791 10.05277 10.75736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.002798 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.502684 B =10002.972869 C =12624.766703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.124 4.124 5 C 0.146 3.854 6 H 0.104 0.896 7 C 0.049 3.951 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.440 3.560 11 O -0.582 6.582 12 N -0.563 5.563 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 N -0.707 5.707 22 C 0.604 3.396 23 O -0.520 6.520 24 C -0.028 4.028 25 C -0.185 4.185 26 C -0.060 4.060 27 O 0.123 5.877 28 N -0.329 5.329 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.092 0.908 40 H 0.347 0.653 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.404 0.596 46 H 0.181 0.819 47 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.931 6.242 15.253 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.163 4.163 5 C 0.042 3.958 6 H 0.122 0.878 7 C -0.081 4.081 8 N -0.300 5.300 9 C -0.083 4.083 10 C 0.225 3.775 11 O -0.466 6.466 12 N -0.200 5.200 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 N -0.358 5.358 22 C 0.387 3.613 23 O -0.394 6.394 24 C -0.188 4.188 25 C -0.207 4.207 26 C -0.141 4.141 27 O 0.047 5.953 28 N -0.029 5.029 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.167 0.833 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.239 0.761 46 H 0.198 0.802 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -17.481 6.891 14.468 23.715 hybrid contribution 0.422 -1.000 0.168 1.098 sum -17.059 5.891 14.636 23.236 Atomic orbital electron populations 1.21828 0.95191 1.01569 1.01736 1.21125 0.95687 0.96756 0.97864 1.21901 1.01666 0.95519 1.01711 1.22048 0.94335 1.00969 0.98954 1.21242 0.93566 0.99071 0.81895 0.87795 1.22351 0.89137 0.98293 0.98304 1.60046 1.10178 1.53584 1.06183 1.21697 0.95672 0.95701 0.95206 1.19791 0.88458 0.84101 0.85111 1.90536 1.66617 1.52212 1.37228 1.41862 1.08228 1.45635 1.24288 1.19756 0.82360 1.30026 1.10658 0.87889 1.25261 1.00585 0.96673 0.95430 1.69617 1.36472 1.34631 1.13612 0.85802 0.82236 0.77971 0.78362 1.19208 1.20763 1.20715 1.45857 1.66169 1.13494 1.10270 1.16796 0.77044 0.85962 0.81455 1.90798 1.50598 1.13174 1.84788 1.23649 1.07245 0.90252 0.97641 1.22780 1.04885 1.02540 0.90521 1.26063 1.03437 0.84334 1.00238 1.84811 1.62437 1.33708 1.14334 1.74203 1.13550 1.17612 0.97553 0.92813 0.92601 0.92826 0.90645 0.92578 0.92007 0.92800 0.91708 0.91125 0.94838 0.88971 0.83305 0.93787 0.89389 0.77466 0.91923 0.76089 0.80158 0.75900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.15 0.34 -0.77 16 2 C -0.10 -0.83 2.76 -90.62 -0.25 -1.08 16 3 C -0.15 -1.42 8.81 37.16 0.33 -1.09 16 4 C -0.12 -1.21 4.41 -26.73 -0.12 -1.33 16 5 C 0.15 1.71 2.19 -67.93 -0.15 1.57 16 6 H 0.10 1.44 6.01 -51.93 -0.31 1.13 16 7 C 0.05 0.58 4.88 -3.82 -0.02 0.57 16 8 N -0.67 -10.84 6.12 -115.05 -0.70 -11.54 16 9 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 10 C 0.44 10.52 7.82 -10.98 -0.09 10.43 16 11 O -0.58 -16.14 15.78 5.55 0.09 -16.05 16 12 N -0.56 -14.40 5.29 -10.96 -0.06 -14.45 16 13 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 14 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 17 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 N -0.71 -8.74 4.47 -54.60 -0.24 -8.98 16 22 C 0.60 8.32 7.73 -12.11 -0.09 8.23 16 23 O -0.52 -8.31 16.65 5.37 0.09 -8.22 16 24 C -0.03 -0.35 7.19 -82.52 -0.59 -0.94 16 25 C -0.18 -1.68 10.99 -39.07 -0.43 -2.10 16 26 C -0.06 -0.39 12.28 29.69 0.36 -0.02 16 27 O 0.12 1.18 11.18 17.25 0.19 1.38 16 28 N -0.33 -3.95 11.85 33.29 0.39 -3.55 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.64 6.40 -51.93 -0.33 0.31 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.65 6.74 -51.93 -0.35 0.30 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.09 1.02 6.67 -51.93 -0.35 0.67 16 40 H 0.35 5.96 7.19 -39.29 -0.28 5.68 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.40 4.74 7.74 -40.82 -0.32 4.43 16 46 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.22 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -34.47 396.47 -6.39 -40.86 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -6.84 Total: 16.08 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.98 Total: 6.23 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.11 Total: -62.46 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.37 Total: -22.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.47 -6.39 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753734312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.908 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds