Wall clock time and date at job start Tue Mar 31 2020 21:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47386 * 2 1 4 4 C 1.52997 * 109.47475 * 120.00422 * 2 1 3 5 5 C 1.53000 * 109.47491 * 175.21810 * 4 2 1 6 6 H 1.08997 * 109.46920 * 56.66514 * 5 4 2 7 7 C 1.53000 * 109.47066 * 296.66309 * 5 4 2 8 8 N 1.46900 * 109.47072 * 184.99748 * 7 5 4 9 9 C 1.46901 * 110.99622 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.46782 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99987 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99862 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00174 * 180.02562 * 12 10 9 14 14 H 1.07996 * 119.99457 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00115 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00097 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47510 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47306 * 120.00376 * 17 15 13 20 20 H 1.48504 * 109.46991 * 239.99882 * 17 15 13 21 21 N 1.46502 * 109.47243 * 176.66095 * 5 4 2 22 22 C 1.34769 * 120.00239 * 278.96054 * 21 5 4 23 23 O 1.21498 * 120.00185 * 354.33662 * 22 21 5 24 24 C 1.48333 * 120.00168 * 174.61756 * 22 21 5 25 25 C 1.42277 * 126.93799 * 180.02562 * 24 22 21 26 26 C 1.35313 * 103.91869 * 179.97438 * 25 24 22 27 27 O 1.34013 * 106.67166 * 359.97438 * 26 25 24 28 28 N 1.20910 * 111.84537 * 359.70852 * 27 26 25 29 29 H 1.08997 * 109.47152 * 299.99211 * 1 2 3 30 30 H 1.08999 * 109.47228 * 59.99891 * 1 2 3 31 31 H 1.09002 * 109.46991 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46984 * 240.00236 * 2 1 3 33 33 H 1.08997 * 109.46821 * 65.21196 * 3 2 1 34 34 H 1.08992 * 109.47274 * 185.21449 * 3 2 1 35 35 H 1.09004 * 109.46983 * 305.21554 * 3 2 1 36 36 H 1.08999 * 109.47555 * 55.21319 * 4 2 1 37 37 H 1.09004 * 109.46843 * 295.21610 * 4 2 1 38 38 H 1.09008 * 109.46930 * 304.99914 * 7 5 4 39 39 H 1.08999 * 109.46872 * 64.99862 * 7 5 4 40 40 H 1.00901 * 111.00038 * 56.04715 * 8 7 5 41 41 H 1.08993 * 109.47420 * 299.99910 * 9 8 7 42 42 H 1.08998 * 109.47145 * 60.00321 * 9 8 7 43 43 H 0.97008 * 120.00362 * 359.97438 * 12 10 9 44 44 H 0.96996 * 119.99988 * 180.02562 * 16 15 13 45 45 H 0.97001 * 119.99289 * 98.95487 * 21 5 4 46 46 H 1.07992 * 128.03911 * 359.97438 * 25 24 22 47 47 H 1.07997 * 126.66590 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5653 -0.8263 1.1905 6 1 3.9943 0.1703 1.0870 7 6 3.9717 -1.6837 -0.0098 8 7 5.4269 -1.8839 0.0018 9 6 5.8543 -2.7052 -1.1387 10 6 7.3496 -2.8881 -1.0937 11 8 7.9955 -2.3842 -0.1992 12 7 7.9690 -3.6115 -2.0473 13 6 9.3292 -3.7783 -2.0060 14 1 9.9043 -3.3296 -1.2096 15 6 9.9678 -4.5246 -2.9889 16 7 9.2680 -5.0700 -3.9583 17 14 11.8211 -4.7512 -2.9330 18 1 12.3712 -4.0416 -1.7502 19 1 12.1402 -6.1981 -2.8342 20 1 12.4254 -4.1945 -4.1701 21 7 4.0600 -1.4453 2.4227 22 6 4.2074 -0.7029 3.5377 23 8 4.0292 0.4982 3.4958 24 6 4.5933 -1.3512 4.8148 25 6 4.7881 -0.7145 6.0722 26 6 5.1244 -1.7290 6.9021 27 8 5.1174 -2.8477 6.1642 28 7 4.8166 -2.6263 5.0143 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.7549 1.9286 0.9330 34 1 3.1259 1.4439 -0.0934 35 1 1.6024 1.9826 -0.8396 36 1 1.6084 -1.7213 1.2931 37 1 1.7484 -0.1604 2.1371 38 1 3.4714 -2.6504 0.0482 39 1 3.6816 -1.1792 -0.9315 40 1 5.7289 -2.2916 0.8739 41 1 5.3672 -3.6789 -1.0881 42 1 5.5773 -2.2082 -2.0684 43 1 7.4524 -4.0148 -2.7625 44 1 9.7137 -5.5913 -4.6442 45 1 4.2813 -2.3897 2.4359 46 1 4.6902 0.3345 6.3092 47 1 5.3538 -1.6521 7.9546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753734312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:55 Heat of formation + Delta-G solvation = -46.670218 kcal Electronic energy + Delta-G solvation = -29132.847262 eV Core-core repulsion = 24931.632365 eV Total energy + Delta-G solvation = -4201.214896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.12931 -41.15821 -40.15781 -38.67957 -36.57193 -35.91001 -35.22840 -34.83808 -33.28897 -32.85002 -31.14591 -28.75618 -28.01654 -26.71154 -26.15213 -24.67596 -23.99994 -22.79950 -21.67898 -21.14804 -20.56446 -19.96354 -19.57518 -18.80309 -18.18095 -17.80159 -17.29793 -16.94478 -16.61315 -16.41654 -15.95932 -15.89364 -15.59794 -15.29529 -15.07503 -14.97551 -14.55688 -14.46517 -14.29690 -14.05785 -13.67273 -13.51680 -13.20064 -13.13044 -13.00556 -12.80951 -12.74619 -12.69897 -12.43113 -12.21433 -12.13015 -11.98209 -11.67212 -11.55226 -11.53791 -11.49519 -11.27506 -10.73927 -10.40670 -10.20692 -10.03619 -9.40450 -8.48932 -5.97627 0.06388 0.77475 1.34887 1.40393 1.54531 1.77541 2.01034 2.02603 2.27187 2.31162 2.79545 2.89921 3.18280 3.43796 3.58708 3.74338 3.93321 4.01164 4.02782 4.08381 4.15702 4.25306 4.30322 4.39576 4.48195 4.55786 4.61709 4.64097 4.71105 4.80259 4.82696 4.88942 4.97198 4.98786 5.04800 5.11623 5.31317 5.32837 5.39108 5.46002 5.50791 5.81405 6.04660 6.18250 6.25522 6.57934 6.84841 7.05917 7.10695 7.53703 8.09511 8.68659 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.002798 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.502684 B =10002.972869 C =12624.766703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.113 4.113 5 C 0.149 3.851 6 H 0.078 0.922 7 C 0.054 3.946 8 N -0.685 5.685 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.571 5.571 13 C -0.334 4.334 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.992 3.008 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.270 1.270 21 N -0.702 5.702 22 C 0.598 3.402 23 O -0.552 6.552 24 C -0.059 4.059 25 C -0.206 4.206 26 C -0.026 4.026 27 O 0.125 5.875 28 N -0.353 5.353 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.339 0.661 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.407 0.593 46 H 0.192 0.808 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.807 5.320 15.544 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.152 4.152 5 C 0.045 3.955 6 H 0.097 0.903 7 C -0.074 4.074 8 N -0.318 5.318 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.513 6.513 12 N -0.208 5.208 13 C -0.464 4.464 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.815 3.185 18 H -0.200 1.200 19 H -0.194 1.194 20 H -0.195 1.195 21 N -0.353 5.353 22 C 0.383 3.617 23 O -0.429 6.429 24 C -0.216 4.216 25 C -0.228 4.228 26 C -0.106 4.106 27 O 0.048 5.952 28 N -0.053 5.053 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.128 0.872 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.243 0.757 46 H 0.209 0.791 47 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -18.400 5.944 14.712 24.297 hybrid contribution 0.687 -0.693 0.168 0.991 sum -17.712 5.250 14.881 23.722 Atomic orbital electron populations 1.21801 0.94008 1.02216 1.02004 1.21135 0.96617 0.95962 0.97469 1.21883 1.00696 0.96395 1.01699 1.21950 0.92622 1.01643 0.98970 1.21222 0.94786 0.97745 0.81745 0.90345 1.22425 0.86602 0.99535 0.98872 1.60026 1.13052 1.53420 1.05320 1.21570 0.90744 0.97760 0.96670 1.20921 0.91110 0.82169 0.83531 1.90504 1.68511 1.53549 1.38719 1.41914 1.07609 1.46298 1.25006 1.19678 0.83824 1.31806 1.11101 0.90597 1.26020 1.04771 0.95697 0.94625 1.69667 1.38078 1.34442 1.13767 0.84890 0.76952 0.78337 0.78273 1.19991 1.19411 1.19509 1.45893 1.65647 1.13535 1.10241 1.17113 0.76543 0.85754 0.82315 1.90763 1.52277 1.14419 1.85453 1.23703 1.08884 0.91025 0.98033 1.23077 1.06114 1.03840 0.89818 1.26994 0.99959 0.82161 1.01514 1.84767 1.61695 1.34877 1.13894 1.74202 1.14634 1.17599 0.98837 0.93149 0.91781 0.91979 0.89739 0.93525 0.93591 0.91632 0.90316 0.92627 0.92475 0.87517 0.84235 0.90999 0.87223 0.76853 0.91227 0.75724 0.79090 0.70549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 2 C -0.09 -1.50 2.76 -10.80 -0.03 -1.53 16 3 C -0.15 -2.79 8.81 71.98 0.63 -2.16 16 4 C -0.11 -2.13 4.41 30.59 0.14 -1.99 16 5 C 0.15 3.50 2.19 44.99 0.10 3.60 16 6 H 0.08 2.28 6.01 -2.39 -0.01 2.27 16 7 C 0.05 1.22 4.88 86.30 0.42 1.64 16 8 N -0.69 -21.90 6.12 -517.92 -3.17 -25.07 16 9 C 0.06 2.19 6.17 85.56 0.53 2.72 16 10 C 0.44 21.03 7.82 87.66 0.69 21.71 16 11 O -0.63 -35.80 15.78 -3.07 -0.05 -35.85 16 12 N -0.57 -29.54 5.29 -306.98 -1.62 -31.16 16 13 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 14 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 16 N -0.92 -49.62 13.05 21.66 0.28 -49.33 16 17 Si 0.99 43.35 29.55 68.60 2.03 45.37 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 N -0.70 -17.87 4.47 -444.95 -1.99 -19.86 16 22 C 0.60 17.29 7.73 86.93 0.67 17.96 16 23 O -0.55 -18.71 16.65 -3.71 -0.06 -18.77 16 24 C -0.06 -1.47 7.19 42.96 0.31 -1.16 16 25 C -0.21 -3.59 10.99 22.60 0.25 -3.34 16 26 C -0.03 -0.28 12.28 67.14 0.82 0.55 16 27 O 0.13 2.24 11.18 71.91 0.80 3.04 16 28 N -0.35 -8.48 11.85 -49.51 -0.59 -9.07 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.24 6.40 -2.38 -0.02 1.22 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 1.00 6.74 -2.39 -0.02 0.98 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.24 8.11 -2.38 -0.02 1.22 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.11 2.10 6.67 -2.39 -0.02 2.08 16 40 H 0.34 11.74 7.19 -89.69 -0.64 11.10 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.40 19.33 7.90 -92.70 -0.73 18.60 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.41 9.76 7.74 -92.71 -0.72 9.04 16 46 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.28 -0.51 8.06 -2.91 -0.02 -0.54 16 Total: -1.00 -77.87 396.47 1.04 -76.83 By element: Atomic # 1 Polarization: 46.80 SS G_CDS: -1.07 Total: 45.74 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.47 Total: 18.13 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -7.08 Total: -134.49 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: 0.69 Total: -51.58 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -77.87 1.04 -76.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753734312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.162 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds